View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_high_1 (Length: 422)
Name: NF10745_high_1
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 40287100 - 40286789
Alignment:
| Q |
1 |
ggaacctcactagttgtagaatattagaattattaatagtcaatacctattaaagatgactttataaaattgttacatttatttgttcgtaaattaattt |
100 |
Q |
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| T |
40287100 |
ggaacctcactagttgtagaatattagaattattaatagtcaatagctattaaagatgactttataaaattgttacatttatttgttcataaattaattt |
40287001 |
T |
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| Q |
101 |
tcttaatctatatctttgaaaaaaggtaattgcacatatgtgcattgaaaatgtgcattagcatgatgatgatgattggatagatagttaccttccaaga |
200 |
Q |
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| T |
40287000 |
tcttaatctatatctttgaaaaaaggtaattgcacatatgtgcattgaaaatgtgcattagcatgatgatgatgattggatagatagttaccttccaaga |
40286901 |
T |
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| Q |
201 |
gcaaatgttcaccactcattcatacatacatcacccataataagccaattttgttcctgacatggctttactttccaactaagcaccagctagataacac |
300 |
Q |
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| T |
40286900 |
gcaaatgttcaccactcattcatacatacatcacccataataagccaattttgttcctgacatggctttactttccaactaagcaccagctagataacac |
40286801 |
T |
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| Q |
301 |
acttatctacct |
312 |
Q |
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|||||||||||| |
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| T |
40286800 |
acttatctacct |
40286789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 332 - 405
Target Start/End: Complemental strand, 40286763 - 40286690
Alignment:
| Q |
332 |
accgtttcatcaacccaatccatatctcttactattctatcttcttcctaagattcaatacaatggcctctctt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40286763 |
accgtttcatcaacccaatccatatctcttactattctatcttcttcctaagcttcaatacaatggcctctctt |
40286690 |
T |
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