View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_high_24 (Length: 250)
Name: NF10745_high_24
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_high_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 12403531 - 12403771
Alignment:
| Q |
8 |
tgagatgaagcaccaagtgttgtctttgaaaacattctccaagttgtttaagaatcacctttggattggtttactttgtgaaattcatacaaggatgtct |
107 |
Q |
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| T |
12403531 |
tgagatgaagcaccaagtgttgtctttgaaaacattctccaagttgtttaagaatcacttttggattggtttactttgtgaaattcatacaaggatgtct |
12403630 |
T |
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| Q |
108 |
atggtgaggaagagtcttagttcaagagttgagaatgttgaagagattgaggacaagttatcattgttggacttgccagagcttaccttggaatgcatac |
207 |
Q |
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| T |
12403631 |
atggtgaggaagagtcttagttcaagagttgagaatgttgaagagattgaggacaagttatcattgttggacttgccagagcttatcttggaatgcatac |
12403730 |
T |
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| Q |
208 |
ttgaaaatttacctccttcttcactttgtcaaatggctggt |
248 |
Q |
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| T |
12403731 |
ttgaaaaattacctccttcttccctttgccaaatggctggt |
12403771 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 38729083 - 38729005
Alignment:
| Q |
172 |
tgttggacttgccagagcttaccttggaatgcatacttgaaaatttacctccttcttcactttgtcaaatggctggtgt |
250 |
Q |
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| T |
38729083 |
tgttggatttgcctgagcttgtgttggaatgcattcttgaaaagctacctccatcctcactttgtcaaatggccggtgt |
38729005 |
T |
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