View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10745_high_4 (Length: 373)
Name: NF10745_high_4
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 2 - 355
Target Start/End: Complemental strand, 37658927 - 37658574
Alignment:
| Q |
2 |
atattaatggtagtctagtatttaacctcattagtctgatatatgagatttgatgacaggatgccatggtgaaagatacacttgaacgggctattgaacc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37658927 |
atattaatggtagtctagtatttaacctcattagtctgatatatgagatttgatgacaggatgccatggtgaaagatacacttgaacgggctattgaacc |
37658828 |
T |
|
| Q |
102 |
aaacttgaacctgagacattatcttcaggaggcatacgtacacccagtttttaagggcgatgagtttgaaaaacaagtgaacattgaagatgaagaggag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37658827 |
aaacttgaacctgagacattatcttcaggaggcatacgtacacccagtttttaagggcgatgagtttgaaaaacaagtgaacgttgaagatgaagaggag |
37658728 |
T |
|
| Q |
202 |
aatcctcttattcagacaaagagagcttgtcggagtagcaagccagaatctgataatgaaactggcagtgcagccagttctacaacagtagctatgtgag |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37658727 |
aatcctcttattcagacaaagagagcttgtcggagtagcaagccagaatctgataatgaagctggcagtgcagccagttctacaacagtagctatgtgag |
37658628 |
T |
|
| Q |
302 |
attccaagaaatggccatggagtaaattataagatgcagcaagcagcatgccta |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37658627 |
attccaagaaatggccatggagtaaattataagatgcagcaagcagcatgccta |
37658574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University