View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_high_6 (Length: 359)
Name: NF10745_high_6
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 38936921 - 38937261
Alignment:
| Q |
1 |
tttggatgaatcccaaatgcttctgtgatatttccattgaactggttatcgtcaagcctaattcttataaaagatgaacaatttctcaaagatttcggca |
100 |
Q |
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| T |
38936921 |
tttggatgaatcccaaatgcttctgtgatatttccattgaactggttatcatcaagcctaattcttataaaagatgaacaatttctcaaagatttcggca |
38937020 |
T |
|
| Q |
101 |
atgaccctgaaaagctgttgttatttactgccaaaacaagtagttttaggccattgcacatgtcagaaggaagttctcctgagaaactattgtttgaaaa |
200 |
Q |
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| T |
38937021 |
atgaccctgaaaagctgttgttatttactgccaaaacaagtagttttaggccattgcacatgtcagaaggaagttctcctgagaaactattgtttgaaaa |
38937120 |
T |
|
| Q |
201 |
gtagacatgagtcaaagaaggactattctttccaaagtctctggaaatgttacctgagaagttattggtgaacacggaaaaataagttaaggaagttaga |
300 |
Q |
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| T |
38937121 |
gtagacatgagtcaaagaaggactattctttccaaagtctctggaaatgttacctgagaagttattggtgaacacggaaaaataagttaaggaagttaga |
38937220 |
T |
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| Q |
301 |
tgagaaattgtgcgtggcaattctccatccaagttattatt |
341 |
Q |
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| T |
38937221 |
tgagaaattgtgcgtggcaattctccatccaagttattatt |
38937261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 39306031 - 39305691
Alignment:
| Q |
1 |
tttggatgaatcccaaatgcttctgtgatatttccattgaactggttatcgtcaagcctaattcttataaaagatgaacaatttctcaaagatttcggca |
100 |
Q |
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|||| |||||||||||||| ||||||||| |||||| |||||| |||||| |||||||||| |||| | || ||||||||||||||||| || || |||| |
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| T |
39306031 |
tttgtatgaatcccaaatgattctgtgatgtttccactgaacttgttatcatcaagcctaactcttgttaaggatgaacaatttctcaaggagtttggca |
39305932 |
T |
|
| Q |
101 |
atgaccctgaaaagctgttgttatttactgccaaaacaagtagttttaggccattgcacatgtcagaaggaagttctcctgagaaactattgtttgaaaa |
200 |
Q |
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|||| ||||||||||||||||||||||| |||||||||| ||| || ||||| |||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
39305931 |
atgatcctgaaaagctgttgttatttacggccaaaacaactagattgtggccactgcataattcagaaggaagttctcctgagaaactattgtttgaaaa |
39305832 |
T |
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| Q |
201 |
gtagacatgagtcaaagaaggactattctttccaaagtctctggaaatgttacctgagaagttattggtgaacacggaaaaataagttaaggaagttaga |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||| |||||| ||||||||| ||||||| |
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| T |
39305831 |
gtagacatgagtcaaagaaggactgttctttccaaaatctctggaaatgcttcctgagaagttattggtgaacacagaaaaagaagttaaggcagttaga |
39305732 |
T |
|
| Q |
301 |
tgagaaattgtgcgtggcaattctccatccaagttattatt |
341 |
Q |
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|||| ||||||| |||||||||||| |||||||||||||| |
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| T |
39305731 |
tgagcaattgtgtctggcaattctccttccaagttattatt |
39305691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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