View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10745_high_9 (Length: 312)
Name: NF10745_high_9
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 45787790 - 45787504
Alignment:
| Q |
1 |
ttatatatacatctaaa-ttaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttctactgaatacgat |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45787790 |
ttatatatacatctaaaattaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttctactgaatacgat |
45787691 |
T |
|
| Q |
100 |
ggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcctctgtgctgccttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45787690 |
ggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcctctgtgctgccttt |
45787591 |
T |
|
| Q |
200 |
tatctcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcgtaacatcaccatcatgcaccatccaa |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45787590 |
tatctcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcataacatcaccatcatgcaccatccaa |
45787504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University