View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_low_11 (Length: 323)
Name: NF10745_low_11
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_11 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 42212234 - 42212548
Alignment:
| Q |
1 |
tgatgaaattcctactttattttgcagacatacgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaacacagcagacac |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42212234 |
tgatgaaattcctactttattttgcagacatatgaaagatcctgcattcaaaaatggcatgatgctggtcacagaacctgccctaaaacacagcagacac |
42212333 |
T |
|
| Q |
101 |
ttttgcaaacatcccttactcagttactcctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaa |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212334 |
ttttgcaaacatcccttactc--------ctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaa |
42212425 |
T |
|
| Q |
201 |
gggagttacagaacnnnnnnntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagc |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212426 |
gggagttacagaacaaaaaaatctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagc |
42212525 |
T |
|
| Q |
301 |
agcaaagggtggctgatgatgag |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
42212526 |
agcaaagggtggctgatgatgag |
42212548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 42203366 - 42203680
Alignment:
| Q |
1 |
tgatgaaattcctactttattttgcagacatacgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaacacagcagacac |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
42203366 |
tgatgaaattcctactttattttgcagacatatgaaagatcctgcattcaaaaatggcttgatgctggtcacagaacctgccctaaaacacagcagacac |
42203465 |
T |
|
| Q |
101 |
ttttgcaaacatcccttactcagttactcctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaa |
200 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203466 |
ttttgcatacatcccttactc--------ctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaa |
42203557 |
T |
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| Q |
201 |
gggagttacagaacnnnnnnntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagc |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203558 |
gggagttacagaacaaaaaaatctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagc |
42203657 |
T |
|
| Q |
301 |
agcaaagggtggctgatgatgag |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
42203658 |
agcaaagggtggctgatgatgag |
42203680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 42421013 - 42420707
Alignment:
| Q |
1 |
tgatgaaattcctactttattttgcagacatacgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaacacagcagacac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42421013 |
tgatgaaattcctactttattttgcagacatatgaaagatcctgcattcaaaaatggcatgatgctggtcacagaacctgccctaaaacacagcagacac |
42420914 |
T |
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| Q |
101 |
ttttgcaaacatcccttactcagttactcctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaa |
200 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42420913 |
ttttgcaaacaacccttactc--------ctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaa |
42420822 |
T |
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| Q |
201 |
gggagttacagaacnnnnnnntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagc |
300 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| | |
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| T |
42420821 |
gggagttgcagaacaaagaaatctggaaccagtctttcagattgtgacaaaactgctatcaaagctttattggataagctaacaagtaatgatattgaac |
42420722 |
T |
|
| Q |
301 |
agcaaagggtggctg |
315 |
Q |
| |
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||||||||| ||||| |
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| T |
42420721 |
agcaaagggcggctg |
42420707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 42218215 - 42218332
Alignment:
| Q |
1 |
tgatgaaattcctactttattttgcagacatacgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaacacagcagacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| |||||| |
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| T |
42218215 |
tgatgaaattcctactttattttgcagacatatgaaagatcctgcattcaaaaatgacttgatgctggtcacataacctgccctaaaatacagtagacac |
42218314 |
T |
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| Q |
101 |
ttttgcaaacatccctta |
118 |
Q |
| |
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||||||| |||||||||| |
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| T |
42218315 |
ttttgcatacatccctta |
42218332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 306
Target Start/End: Complemental strand, 42409172 - 42408893
Alignment:
| Q |
22 |
ttgcagacatacgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaacacagcagacacttttgcaaacatcccttactc |
121 |
Q |
| |
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|||| |||||| |||||||| ||||||||||||| |||||||||||||| ||| ||| | ||||||||||||| ||||| | | ||| ||||||||| |
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| T |
42409172 |
ttgcggacatatgaaagatcttgcattcaaaaattatttgatgctggtcacagaacttgcgcgaaaacacagcagatactttgg-atacagcccttactc |
42409074 |
T |
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| Q |
122 |
agttactcctaactacgttttgaagagtctgattggtttatggtgtg-atagcaatggtgttgaactaccaaag---aagcaagggagttacagaacnnn |
217 |
Q |
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||||| | ||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||||| |||||||||| | ||||| |
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| T |
42409073 |
--------ctaaccatgttttgaagagtctgattggtttatggtgtgaacagcaatggtgtttaactaacaaagaaaaagcaagggaactgtagaacaaa |
42408982 |
T |
|
| Q |
218 |
nnnntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaa |
306 |
Q |
| |
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||||| ||| |||||||||||| |||||||| ||||||||||| ||||||| ||||| |||| |||||| |||||| ||||||| |
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| T |
42408981 |
gaaatctgggaccaatctttcagattgcgacagaaccgctatcaaagcattattggataagcaaacaagtaatggtattgaacagcaaa |
42408893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 42218340 - 42218406
Alignment:
| Q |
249 |
agaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaagggtggctg |
315 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||||||||||||| || |||||| ||||| |
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| T |
42218340 |
agaactgctatcaaagctttattggataagctaacaagtaatgatattgaacaaaaaagggcggctg |
42218406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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