View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10745_low_14 (Length: 299)
Name: NF10745_low_14
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 42249039 - 42249292
Alignment:
| Q |
11 |
cagagaagttcaaaagtcaaaagtagataccttcaatggctcggtgcttccctctgcaacaggaacattctgacggcctgcgatctcacactatcctttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42249039 |
cagagaagttcaaaagtcaaaagtagataccttcaatggctcggtgcttccctctgcaacaggaacattctgacggcctgcgatctcacactatcctttt |
42249138 |
T |
|
| Q |
111 |
caaaaattaaaaacacaatcaagaacagattccaaaaacataaaaagacagaatttttcagaatcaatagccaacatccatccagattgacatgatttct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42249139 |
caaaaattaaaaacacaatcaagaacagattccaaaaacataaaaagacagaatttttcagaatcaatagccaacatccatccagattgacatgatttct |
42249238 |
T |
|
| Q |
211 |
ttttcttcgattttaatctatagatagagtgacaaatatcacatgaaactcgtg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42249239 |
ttttcttcgattttaatctatagatagagtgacaaatatcacatgaaactcgtg |
42249292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University