View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_low_15 (Length: 290)
Name: NF10745_low_15
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 4712327 - 4712590
Alignment:
| Q |
11 |
cagagagtatctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctcgctggtttgaatcccatcaa |
110 |
Q |
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| T |
4712327 |
cagaaagtatctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctcgctggtttgaatcccatcaa |
4712426 |
T |
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| Q |
111 |
acacattataccatcatctccaaatcgacgatcgaagtcgaagaaatcacccatagtcatgtttgctttggttggattatcatgtctcttgctagcattt |
210 |
Q |
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| T |
4712427 |
acacattataccatcatctccaaatcgacgatcgaagtcgaagaaatcacccatagtcatgtttgctttggttggattatcatgtctcttgctagcattt |
4712526 |
T |
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| Q |
211 |
ataatgggagtaatagtttttcttagaagaagaagatttgaatctcaatttgaaatgaaagaaa |
274 |
Q |
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| T |
4712527 |
ataatgggagtaatagtttttcttagaagaagaagatttgaatctcaatttgaaatgaaagaaa |
4712590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 4846295 - 4846465
Alignment:
| Q |
42 |
cataatgaatggaattgagattttcaaaataagtgataaaaataatctcgctggtttgaatcccatcaaacac---attataccatcatctccaaatcga |
138 |
Q |
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| T |
4846295 |
catattgaatggaatcgagattttcaaagtaagtgataaaaacaatctggctggtatgaatcccaacaaacccatgattataccaacatctccaaaacac |
4846394 |
T |
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| Q |
139 |
cgatcgaagtcgaagaaatcacccatagtcatgtttgctttggttggattatcatgtctcttgctagcatt |
209 |
Q |
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| T |
4846395 |
cgatcaaagtcaaagaagtcaaccacgttcatggttgctgtggttggagtttcatgtctcttgctggcatt |
4846465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 4636668 - 4636584
Alignment:
| Q |
49 |
aatggaattgagattttcaaaataagtgataaaaataa---tctcgctggtttgaatcccatcaaacacattataccatcatctc |
130 |
Q |
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| T |
4636668 |
aatggaatcgagattttcaaaattagtgataaatataacaatctcgctggtttgaatcccaacaaacacattatactatcatctc |
4636584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 4784110 - 4784166
Alignment:
| Q |
34 |
cgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctc |
90 |
Q |
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| T |
4784110 |
cgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaataatctc |
4784166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 4816539 - 4816595
Alignment:
| Q |
34 |
cgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctc |
90 |
Q |
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| T |
4816539 |
cgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaataatctc |
4816595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 4630747 - 4630692
Alignment:
| Q |
34 |
cgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatct |
89 |
Q |
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| T |
4630747 |
cgtgatgtcctgctgaatggaattgagattttcaaaataagtgataaaactaatct |
4630692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 4672509 - 4672443
Alignment:
| Q |
21 |
ctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataat |
87 |
Q |
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| T |
4672509 |
ctacacaaaagacagtgatgtcacattaaatggaatcgagattttcaaagtaagtgataaaaataat |
4672443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 4863751 - 4863689
Alignment:
| Q |
25 |
acaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataat |
87 |
Q |
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| T |
4863751 |
acaaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataat |
4863689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 4643499 - 4643454
Alignment:
| Q |
41 |
tcataatgaatggaattgagattttcaaaataagtgataaaaataa |
86 |
Q |
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| T |
4643499 |
tcatattgaatggaatcgagattttaaaaataagtgacaaaaataa |
4643454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 18926001 - 18926069
Alignment:
| Q |
18 |
tatctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataa |
86 |
Q |
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| T |
18926001 |
tatctactcaaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataa |
18926069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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