View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_low_20 (Length: 259)
Name: NF10745_low_20
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 12404055 - 12403826
Alignment:
| Q |
19 |
cagttcataacagaatcaacaggcaatgaactcctatgattgcagctatcatttccatcaccaacctttaatttcatcccttgaaaaggccaaagaagag |
118 |
Q |
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| T |
12404055 |
cagttcataacagcttcaacaggcaatgaactcctatgattgcagctatcatttccatcaccaacctttaatttcatcccttgaaaaggccaaagaagag |
12403956 |
T |
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| Q |
119 |
agaaaattttcatccataacccactttgtttgccatatttaagactcccaacacccctatttgaagcaacatgccatttccattccctataagcagcttg |
218 |
Q |
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| T |
12403955 |
agaaaattttcatccataacccactttgtttgccatgtttaagactcccaacacccatatttgaagcaacatgccatttccattccctataagcagcttg |
12403856 |
T |
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| Q |
219 |
accaataactccaccccatttcttcttcat |
248 |
Q |
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| T |
12403855 |
accaataactccaccccatttcttcttcat |
12403826 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 38728887 - 38728945
Alignment:
| Q |
183 |
agcaacatgccatttccattccctataagcagcttgaccaataactccaccccatttct |
241 |
Q |
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| T |
38728887 |
agcaacatgccatttccattccctataagcaacagaaccaataactctaccccatttct |
38728945 |
T |
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