View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_low_26 (Length: 250)
Name: NF10745_low_26
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 47832301 - 47832060
Alignment:
| Q |
1 |
cctccaatattaagaagttcatcttgagttgtatcacatgctttcatgacccatgtaggagagggaacaaatctttccaaggaaatgtcgacgtttgtcg |
100 |
Q |
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| T |
47832301 |
cctccaatattaagaagttcatcttgagtggtatcacatgctttcatgacccatgtaggagagggaacaaatctttccaaggaaatgtcgacgtttgtcg |
47832202 |
T |
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| Q |
101 |
aagacctagtggctagtcttcttccaaagtagacattaacattacttggttgttttcttaatattgaataaagtgaaaaaagtaccacacacacaatgat |
200 |
Q |
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| T |
47832201 |
aagacctagtggctagtcttcttccaaagtagacattaacattacttggttgttttcttaatattgaataaagtgaaaaaagtaccacacacacaatgat |
47832102 |
T |
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| Q |
201 |
attaattccagcagaagttaaaagagcagcaaggttcatctc |
242 |
Q |
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| T |
47832101 |
attaattccagcagaagttaaaagagcagcaaggttcatctc |
47832060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 4711117 - 4711233
Alignment:
| Q |
112 |
gctagtcttcttccaaagtagacattaacattacttggttgttttcttaatattgaataaagtgaaaaaagtaccacacacacaatgatattaattccag |
211 |
Q |
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| T |
4711117 |
gctagtctccgtgcaaagtacacattaacattgctgggctgttttcttagtatcgaatatagtgaaaagatcaccacacacacagcgatattaattccag |
4711216 |
T |
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| Q |
212 |
cagaagttaaaagagca |
228 |
Q |
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| T |
4711217 |
cagaagttaaaagagca |
4711233 |
T |
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