View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10745_low_3 (Length: 377)
Name: NF10745_low_3
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_3 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 39065746 - 39066109
Alignment:
| Q |
14 |
aaatgatggtgtatcttttctaatctaaattttcttgcataataaaatttactgtctttctaaatcacgatcaataataatatcttcacgaggagtacta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39065746 |
aaatgatggtgtatcttttctaatctaaattttcttgcataataaaatttactgtctctctaaatcacgatcaataataatatcttcacgaggagtacta |
39065845 |
T |
|
| Q |
114 |
gaaggttggattcttctcgaagatctatccctagtaagaattctacgaaaagagctcaaccttgaaatatttttgggggacacactaccaccgtccgatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39065846 |
gaaggttggattcttctcgaagatctatccctagtgagaattctacgaaaagagctcaaccttgaaatatttttgggggacacactaccaccatccgatg |
39065945 |
T |
|
| Q |
214 |
taccttcggatgttgatataaacaaagtgggaccctcacgtggctctgcttctggccgcggttcaaccttggttcgacaatttggacaggtggaatgcga |
313 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39065946 |
taccttcggatggtgatataaacaaagtgggaccctcacgtggctctgcttccggccgcggttcaaccttggttcgacaatttggacaggtggaatgcga |
39066045 |
T |
|
| Q |
314 |
agctaaccacttatcaatacaacccacatggaaactatgcttacaattaggaagcaacctcatc |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39066046 |
agctaaccacttatcaatacaacccacatggaaactatgcttacaattaggaagcaacctcatc |
39066109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 255 - 377
Target Start/End: Original strand, 39032030 - 39032152
Alignment:
| Q |
255 |
ggctctgcttctggccgcggttcaaccttggttcgacaatttggacaggtggaatgcgaagctaaccacttatcaatacaacccacatggaaactatgct |
354 |
Q |
| |
|
||||||| ||| ||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
39032030 |
ggctctggttcaagcctcggctcaaccttggttcgacaaattggacacgtggaatgcgaagctaaccacttgtcaatacaacccacatgaaaactatgct |
39032129 |
T |
|
| Q |
355 |
tacaattaggaagcaacctcatc |
377 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
39032130 |
tacaatttggaagcaacctcatc |
39032152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University