View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10745_low_30 (Length: 250)

Name: NF10745_low_30
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10745_low_30
NF10745_low_30
[»] chr3 (25 HSPs)
chr3 (4-155)||(34532222-34532373)
chr3 (157-245)||(33886983-33887071)
chr3 (9-107)||(12762581-12762679)
chr3 (157-231)||(53517358-53517432)
chr3 (157-230)||(44582064-44582137)
chr3 (9-107)||(34627773-34627871)
chr3 (14-108)||(18741196-18741290)
chr3 (8-76)||(37035416-37035484)
chr3 (11-75)||(52564543-52564607)
chr3 (9-103)||(49780632-49780726)
chr3 (46-107)||(36755979-36756040)
chr3 (160-229)||(44826210-44826278)
chr3 (11-107)||(13348028-13348124)
chr3 (2-108)||(29573240-29573347)
chr3 (9-76)||(45693857-45693924)
chr3 (9-71)||(4844849-4844911)
chr3 (9-107)||(43143596-43143694)
chr3 (9-71)||(50559104-50559166)
chr3 (9-71)||(52418333-52418395)
chr3 (13-107)||(55361129-55361223)
chr3 (47-96)||(46965848-46965897)
chr3 (46-107)||(52714815-52714876)
chr3 (10-71)||(52937301-52937361)
chr3 (5-73)||(34662115-34662183)
chr3 (9-65)||(48176741-48176797)
[»] chr7 (26 HSPs)
chr7 (155-230)||(8292294-8292369)
chr7 (167-226)||(9940062-9940121)
chr7 (157-198)||(34827999-34828040)
chr7 (4-71)||(19896674-19896741)
chr7 (11-108)||(1504254-1504351)
chr7 (10-71)||(21023010-21023070)
chr7 (10-108)||(7817716-7817814)
chr7 (9-107)||(1284495-1284593)
chr7 (8-66)||(1284917-1284975)
chr7 (9-107)||(10700078-10700175)
chr7 (2-76)||(38656648-38656722)
chr7 (9-107)||(43159467-43159564)
chr7 (8-108)||(1471181-1471282)
chr7 (9-42)||(6522165-6522198)
chr7 (10-71)||(19785972-19786032)
chr7 (9-105)||(33775022-33775119)
chr7 (46-107)||(35822903-35822964)
chr7 (46-107)||(40854583-40854644)
chr7 (10-71)||(41666815-41666875)
chr7 (10-67)||(41894037-41894093)
chr7 (59-107)||(4292509-4292557)
chr7 (8-76)||(13401554-13401622)
chr7 (1-69)||(20337430-20337498)
chr7 (10-107)||(20454326-20454425)
chr7 (11-75)||(25115718-25115782)
chr7 (8-76)||(35600784-35600852)
[»] chr2 (25 HSPs)
chr2 (157-230)||(21871563-21871636)
chr2 (9-107)||(1907655-1907753)
chr2 (9-107)||(7663959-7664056)
chr2 (10-108)||(1415931-1416030)
chr2 (11-71)||(14498900-14498960)
chr2 (6-73)||(16199601-16199668)
chr2 (9-107)||(44977391-44977489)
chr2 (11-52)||(14500766-14500807)
chr2 (9-90)||(28494958-28495039)
chr2 (46-107)||(33616549-33616610)
chr2 (10-71)||(40936957-40937017)
chr2 (11-71)||(43520975-43521035)
chr2 (12-71)||(11167413-11167471)
chr2 (8-75)||(14255416-14255483)
chr2 (9-107)||(8848589-8848687)
chr2 (42-108)||(9936275-9936341)
chr2 (8-108)||(34134661-34134762)
chr2 (10-71)||(34431722-34431782)
chr2 (10-71)||(36643977-36644037)
chr2 (46-107)||(45259217-45259278)
chr2 (48-103)||(3412485-3412541)
chr2 (8-76)||(9048292-9048360)
chr2 (9-73)||(20532354-20532418)
chr2 (10-105)||(22525889-22525984)
chr2 (11-107)||(32628264-32628360)
[»] scaffold0005 (1 HSPs)
scaffold0005 (8-107)||(213741-213840)
[»] chr8 (21 HSPs)
chr8 (9-108)||(12734903-12735002)
chr8 (2-108)||(40517338-40517444)
chr8 (159-230)||(28798026-28798097)
chr8 (9-107)||(13106561-13106659)
chr8 (9-71)||(32752521-32752583)
chr8 (9-107)||(39856119-39856217)
chr8 (8-108)||(10644692-10644793)
chr8 (10-71)||(30439399-30439459)
chr8 (46-107)||(41639726-41639787)
chr8 (11-71)||(144150-144210)
chr8 (14-66)||(8386209-8386261)
chr8 (9-103)||(37133754-37133848)
chr8 (46-99)||(6440171-6440224)
chr8 (32-97)||(8103841-8103906)
chr8 (10-71)||(38958444-38958505)
chr8 (46-107)||(42619909-42619970)
chr8 (10-71)||(45508651-45508711)
chr8 (9-108)||(6445257-6445359)
chr8 (47-107)||(12656004-12656064)
chr8 (47-107)||(33100400-33100460)
chr8 (10-105)||(37597321-37597416)
[»] chr4 (29 HSPs)
chr4 (8-107)||(14603538-14603637)
chr4 (9-107)||(39654905-39655003)
chr4 (159-230)||(47803535-47803606)
chr4 (162-223)||(7182467-7182528)
chr4 (2-107)||(27371222-27371327)
chr4 (9-107)||(12595522-12595620)
chr4 (47-103)||(42510466-42510522)
chr4 (11-107)||(46767837-46767932)
chr4 (9-108)||(47744404-47744503)
chr4 (13-108)||(52895308-52895404)
chr4 (2-108)||(3078792-3078899)
chr4 (8-107)||(21025683-21025782)
chr4 (10-108)||(21172360-21172458)
chr4 (12-71)||(23662211-23662270)
chr4 (11-108)||(12138933-12139030)
chr4 (13-71)||(24990232-24990290)
chr4 (11-108)||(37514025-37514123)
chr4 (9-75)||(47288196-47288262)
chr4 (9-107)||(50831647-50831745)
chr4 (9-71)||(52790687-52790749)
chr4 (2-107)||(11068769-11068874)
chr4 (46-107)||(16019558-16019619)
chr4 (3-76)||(24509273-24509346)
chr4 (34-107)||(37997335-37997408)
chr4 (10-71)||(46405867-46405927)
chr4 (46-107)||(46665123-46665184)
chr4 (15-107)||(10474010-10474102)
chr4 (47-107)||(31574869-31574929)
chr4 (47-107)||(35874832-35874892)
[»] chr5 (11 HSPs)
chr5 (13-107)||(33599044-33599137)
chr5 (9-105)||(21353340-21353436)
chr5 (3-108)||(9939317-9939423)
chr5 (5-91)||(28597071-28597157)
chr5 (46-107)||(33958188-33958249)
chr5 (8-95)||(15711380-15711466)
chr5 (10-71)||(5042366-5042426)
chr5 (8-108)||(6940040-6940141)
chr5 (2-71)||(13310000-13310069)
chr5 (10-71)||(15952938-15952998)
chr5 (10-71)||(41175599-41175659)
[»] scaffold0174 (1 HSPs)
scaffold0174 (16-73)||(34692-34749)
[»] chr6 (18 HSPs)
chr6 (9-107)||(4820448-4820546)
chr6 (11-108)||(30956152-30956249)
chr6 (1-76)||(10826615-10826690)
chr6 (9-108)||(30945894-30945993)
chr6 (9-107)||(277072-277170)
chr6 (11-101)||(30621826-30621917)
chr6 (58-108)||(32295304-32295354)
chr6 (9-82)||(2159197-2159270)
chr6 (4-71)||(3552042-3552109)
chr6 (8-107)||(25127721-25127820)
chr6 (10-108)||(31749445-31749543)
chr6 (11-108)||(5028160-5028257)
chr6 (13-107)||(20998041-20998135)
chr6 (9-71)||(33656888-33656950)
chr6 (9-105)||(2241918-2242013)
chr6 (59-107)||(3853249-3853297)
chr6 (48-108)||(11014079-11014139)
chr6 (52-108)||(31413605-31413661)
[»] chr1 (22 HSPs)
chr1 (10-108)||(8447816-8447914)
chr1 (8-76)||(11597749-11597817)
chr1 (13-105)||(18639603-18639695)
chr1 (8-108)||(31433570-31433670)
chr1 (157-203)||(12004666-12004712)
chr1 (9-76)||(12127976-12128044)
chr1 (8-76)||(43560317-43560385)
chr1 (5-76)||(39712491-39712562)
chr1 (10-103)||(5485981-5486074)
chr1 (47-108)||(21093288-21093349)
chr1 (10-67)||(29147766-29147823)
chr1 (9-107)||(39849045-39849143)
chr1 (9-103)||(51571238-51571332)
chr1 (33-90)||(1863091-1863148)
chr1 (35-104)||(12238814-12238883)
chr1 (10-71)||(33358051-33358111)
chr1 (10-71)||(36779162-36779222)
chr1 (10-107)||(37516604-37516701)
chr1 (2-71)||(51436655-51436724)
chr1 (8-76)||(32158687-32158755)
chr1 (59-107)||(43775287-43775335)
chr1 (48-108)||(49559131-49559191)
[»] scaffold0087 (1 HSPs)
scaffold0087 (9-107)||(53253-53351)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 34532373 - 34532222
Alignment:
Q  4 agaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaataga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34532373 agaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaataaa 34532274  T
Q  104 gagattgattattcatatacactgataannnnnnnaaacatctcattacgaa 155  Q
    |||||||||||||||||||||||||| |       |||||||||||||||||    
T  34532273 gagattgattattcatatacactgatgatatttttaaacatctcattacgaa 34532222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 33887071 - 33886983
Alignment:
Q  157 aggggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatcttgattcctttgcttct 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  33887071 aggggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatctttatttttttgcttct 33886983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 12762581 - 12762679
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||  ||||| |||||||| |||| |||| |||||    
T  12762581 tgtgttatttgaacaatcatttacatgacaatttatgggacaaccataaatttacaaagaaaaatagttattgacacaaaaatcaaagtaataaagaga 12762679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 53517358 - 53517432
Alignment:
Q  157 aggggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatcttg 231  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||    
T  53517358 aggggcggagccacctcttagtgagggtgtgcacctgcatcccctgaaattttaaattttcaaccaaatatcttg 53517432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 44582064 - 44582137
Alignment:
Q  157 aggggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatctt 230  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||| ||  |||||||||  |||||||||||    
T  44582064 aggggcggagccacctcttagtgagggtgtgtacctgcaccccctgagattgtaaaatttcttccaattatctt 44582137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 34627773 - 34627871
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||| ||||  ||||||| ||||  |||||||||| ||||||||||||||  ||| ||| |||||||||| |||||| || |||||    
T  34627773 tgtgttatttgaacaattatttttatgataacttataagacaaccataaatttacaaagaaaataagatatttatacaaaaatcaaagcagtaaagaga 34627871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 18741290 - 18741196
Alignment:
Q  14 tatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaa-aagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    ||||||||||| |||||    ||||||||||| |||||||||| |||||||||||| ||||||| |||||||| ||||| ||||||||| ||||||    
T  18741290 tatttgaacaaccatttggtggataatttatgggacaaccata-atttacaaagaagaagtagatattgatacgaaaatcaaagcaataaagagat 18741196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 37035416 - 37035484
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    |||||||||||||||||||||||  ||||||| || |||||||||||   |||||||||| ||||||||    
T  37035416 gtgtgttatttgaacaatcatttgaatgataacttttgtgacaaccactaatttacaaaggaaagtaga 37035484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 52564543 - 52564607
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtag 75  Q
    |||||||||||||| |||||  |||| || ||||| |||||||||| ||||||||||||||||||    
T  52564543 tgttatttgaacaaccatttctatgacaacttatgggacaaccatagatttacaaagaaaagtag 52564607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 49780632 - 49780726
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaataga 103  Q
    ||||||||||||| ||  |||||  ||||||||| | ||||||||||| ||||||||||||||| ||  ||||  |||||||  |||||||||||    
T  49780632 tgtgttatttgaataactatttaagtgataatttttatgacaaccataaatttacaaagaaaaggaggtattggcacaaaaaccaaagcaataga 49780726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 36755979 - 36756040
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| |||||||||||||||| |  |||  |||||||| |||||||||||||||    
T  36755979 tgacaaccatatttttacaaagaaaagtatatgttggcacaaaaatcaaagcaatagagaga 36756040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 44826210 - 44826278
Alignment:
Q  160 ggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatct 229  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||  ||  ||||||||||||||| |||||    
T  44826210 ggcggggccacctcttagtgagggtgtgcacctgca-cccctgggattgtaaaatttcaaccaactatct 44826278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 13348028 - 13348124
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||  |||||| |||| || || || |||||||| |  |||||||||||||  ||  |||||||||||||  |||||||||||||||    
T  13348028 tgttatttgaacatccatttatatgacaacttttgggacaaccaaaattttacaaagaaaatgaggtattgatacaaaaaccaaagcaatagagaga 13348124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 29573240 - 29573347
Alignment:
Q  2 aaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaa-gaaaagtagacattgatacaaaaattaaagcaat 100  Q
    ||||| || |||||||||||||| |||||    || ||||||| ||||||||||| ||||||||| |||||||||   |||  || ||||| ||||||||    
T  29573240 aaagaggtatgttatttgaacaaccatttgatagacaatttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagcaat 29573339  T
Q  101 agagagat 108  Q
    ||||||||    
T  29573340 agagagat 29573347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 45693924 - 45693857
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    |||||||||||||||| |||||   ||||||||| ||||||||||||  |||||||||  ||||||||    
T  45693924 tgtgttatttgaacaaccatttgagtgataatttttgtgacaaccattaatttacaaaagaaagtaga 45693857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 4844911 - 4844849
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||||  ||||  | ||||||||||| |||||| |||||||||||| |||||    
T  4844911 tgtgttatttgaacaacaattttaacgataatttatgagacaactatatatttacaaggaaaa 4844849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 43143694 - 43143596
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||| |||||||||||   ||||||||| |  ||||||||||  ||||||||||||| |||| |||  || |||||| ||| |||| ||||||    
T  43143694 tgtgttatttcaacaatcatttgattgataattttttagacaaccataattttacaaagaaaaatagatattagtataaaaatcaaaacaattgagaga 43143596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 50559104 - 50559166
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||||  |||||  ||||||||| | ||||||||||| ||||| ||||||||    
T  50559104 tgtgttatttgaacaactatttatgtgataatttttatgacaaccataaatttataaagaaaa 50559166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 52418395 - 52418333
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||| |||||  |||| || |||| ||||||||||  ||||||||||||||    
T  52418395 tgtgttatttgaacaaccatttcaatgacaagttatatgacaaccattgatttacaaagaaaa 52418333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 55361129 - 55361223
Alignment:
Q  13 ttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||  ||||  |||| || |||||||||||||||  ||||||||||||||  |   ||||| |||||||  |||||||||||||||    
T  55361129 ttatttgaacaactatttgaatgaaaacttatgtgacaaccattgatttacaaagaaaatgaagtattgacacaaaaaccaaagcaatagagaga 55361223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 46965848 - 46965897
Alignment:
Q  47 gacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaag 96  Q
    |||||||||| ||||||||||||||||||  ||||| ||||||| |||||    
T  46965848 gacaaccataaatttacaaagaaaagtaggtattgacacaaaaactaaag 46965897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 52714876 - 52714815
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| ||||||||||||||||    |||  |||||||| |||||||||||||||    
T  52714876 tgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaatcaaagcaatagagaga 52714815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 52937361 - 52937301
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||| |||||   ||||||||| || |||||||||| ||||||||||||||    
T  52937361 gtgttatttgaacaaccatttggttgataatttttgagacaaccata-atttacaaagaaaa 52937301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 34662183 - 34662115
Alignment:
Q  5 gaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagt 73  Q
    ||||||||||||||||| || | |||| ||||||| ||||| |||||| ||| ||||  ||||||||||    
T  34662183 gaagtgtgttatttgaataaccttttatatgataacttatgggacaactatagatttgtaaagaaaagt 34662115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 48176741 - 48176797
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaa 65  Q
    ||||||||||||||||| ||||  || |||||||||| ||||| |||| ||||||||    
T  48176741 tgtgttatttgaacaattatttggataataatttatgcgacaatcataaatttacaa 48176797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 8292369 - 8292294
Alignment:
Q  155 ataggggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatctt 230  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||  |||||||||||    
T  8292369 ataggggcggagccacctcttagtgagggtgtgcacctgcaccccctgagattgtaaaatttcttccaattatctt 8292294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 9940062 - 9940121
Alignment:
Q  167 ccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaatta 226  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||    
T  9940062 ccacctcatagtgagggtgtgcaactgcacaccctgaaattttaaaatttcaatcaatta 9940121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 34828040 - 34827999
Alignment:
Q  157 aggggcggagccacctcatagtgagggtgtgcacctgcaccc 198  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  34828040 aggggcggagccacctcttagtgagggtgtgcacctgcaccc 34827999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 19896741 - 19896674
Alignment:
Q  4 agaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||| ||||||||||||||||||||||| | ||||| ||||| ||||| |||| ||||||||| ||||    
T  19896741 agaattgtgttatttgaacaatcatttatacgataacttatgggacaagcatagatttacaaataaaa 19896674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 1504254 - 1504351
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||||||||||||| |||||   |||||| || || ||||| |||| ||||| ||||||||||||  |||||||| ||||  ||| ||||||||||||    
T  1504254 tgttatttgaacaaccattttggtgataacttttgggacaatcataaatttataaagaaaagtaggtattgatacgaaaaccaaaacaatagagagat 1504351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 21023010 - 21023070
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||||| ||  |||| ||||||| |||||||||||| |||||||||||||    
T  21023010 gtgttatttgaacaatcaatttgatgacaatttatttgacaaccatat-tttacaaagaaaa 21023070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 7817814 - 7817716
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa-gtagacattgatacaaaaattaaagcaatagagagat 108  Q
    ||||||||||||||| |||||   ||| || |||||||||||||||| |||||||||||||| || || |||   || ||||| ||||||||||||||||    
T  7817814 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccata-atttacaaagaaaaagtggatatttgcacgaaaatcaaagcaatagagagat 7817716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 1284593 - 1284495
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||| |||||  ||||||| || ||  |||| |||| ||||  ||||||||   |  ||||| ||||||||||||||||||||||||    
T  1284593 tgtgttatttgaacaaccatttttatgataacttttgatacaatcataaatttgaaaagaaaaagtggtattgacacaaaaattaaagcaatagagaga 1284495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 1284917 - 1284975
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaa 66  Q
    ||||| ||||||||||||||||| ||||| |||||||| |||| ||| |||| ||||||    
T  1284917 gtgtgctatttgaacaatcatttgcatgacaatttatgagacagccacatatatacaaa 1284975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 10700078 - 10700175
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||||||||   ||| || || || ||||||||||  |||| ||||||||  || | |||| |||||||| |||||||||||||||    
T  10700078 tgtgttatttgaacaatcatttgattgacaacttttgggacaaccataattttataaagaaaaaaagtc-ttgacacaaaaatcaaagcaatagagaga 10700175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 38656722 - 38656648
Alignment:
Q  2 aaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    ||||| ||||||||||||||||| || ||  ||||||| || ||||| ||||||  |||||||||| ||||||||    
T  38656722 aaagaggtgtgttatttgaacaaccaattgaatgataacttttgtgagaaccattaatttacaaaggaaagtaga 38656648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 43159467 - 43159564
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||| ||||||  ||| || ||   ||||||||||| ||||||||||||||  ||  |||||||| ||||  |||||||||||||||    
T  43159467 tgtgttatttgaacaaccatttaggtgacaactttgatgacaaccataaatttacaaagaaaaagaggtattgatac-aaaaccaaagcaatagagaga 43159564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 1471181 - 1471282
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaa-aagtagacattgatacaaaaattaaagcaatagagag 106  Q
    |||||||||||||||||  ||||    || || |||| ||||||||||| |||||||||||| |||||||  |||  || ||||| ||||||||||||||    
T  1471181 gtgtgttatttgaacaactatttgatagacaacttatttgacaaccataaatttacaaagaagaagtagattttggcacgaaaatcaaagcaatagagag 1471280  T
Q  107 at 108  Q
    ||    
T  1471281 at 1471282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 6522165 - 6522198
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataattt 42  Q
    ||||||||||||||||||||||| ||||||||||    
T  6522165 tgtgttatttgaacaatcatttatatgataattt 6522198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 19785972 - 19786032
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||||| ||  |||| || |||| |||||||||||| |||||||||||||    
T  19785972 gtgttatttgaacaatcaatttgatgacaacttatttgacaaccatat-tttacaaagaaaa 19786032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 33775119 - 33775022
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaa-gaaaagtagacattgatacaaaaattaaagcaatagaga 105  Q
    |||||||||||||||||| |||   ||| || |||| ||||||||||  ||||| ||| |||||||||  |||| ||||||||| || ||||||||||    
T  33775119 tgtgttatttgaacaatcgtttgattgacaacttatttgacaaccatgaatttataaaagaaaagtaggtattggtacaaaaatcaatgcaatagaga 33775022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 35822903 - 35822964
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| ||||||||||||| ||   ||||  |||||||| |||||||||||||||    
T  35822903 tgacaaccatatttttacaaagaaaaatatgtattggcacaaaaatcaaagcaatagagaga 35822964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 40854583 - 40854644
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| ||||||||||||||||    |||  |||||||| |||||||||||||||    
T  40854583 tgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaatcaaagcaatagagaga 40854644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 41666815 - 41666875
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||| || ||   ||||||||||| |||||||||||| |||||||||||||    
T  41666815 gtgttatttgaacaaccaatttggtgataatttatttgacaaccatat-tttacaaagaaaa 41666875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 41894093 - 41894037
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag 67  Q
    ||||||||||||||| ||||||  ||| ||||| ||||||||||||| ||||||||||    
T  41894093 gtgttatttgaacaaccatttagttgacaatttttgtgacaaccata-atttacaaag 41894037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 4292557 - 4292509
Alignment:
Q  59 tttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||| || | |||| ||||||||| |||||||||||||||    
T  4292557 tttacaaagaaaattaaatattggtacaaaaatcaaagcaatagagaga 4292509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 13401554 - 13401622
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    ||||||||||||||||| ||||||  ||| ||||| |||||||||||   |||||||||| ||| ||||    
T  13401554 gtgtgttatttgaacaaccatttaagtgacaatttttgtgacaaccactaatttacaaaggaaaataga 13401622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20337498 - 20337430
Alignment:
Q  1 taaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaa 69  Q
    |||||| |||||||||||||||||  ||||  |||| || ||||| || ||||||| ||||||||||||    
T  20337498 taaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 20337430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 20454425 - 20454326
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatattt--acaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||| ||||||| | | || ||||| |||||||||| ||||  | ||| ||||||||  ||||| || |||| ||||||| ||||||||    
T  20454425 gtgttatttgaacaaccatttacttaacaacttatgagacaaccatagatttccaaaaaaaaaagtagttattgacacgaaaactaaagcactagagaga 20454326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 25115782 - 25115718
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtag 75  Q
    |||||||||| |||||||||| | |||||||||||||| ||  | ||||  ||||||||||||||    
T  25115782 tgttatttgatcaatcatttataggataatttatgtgataattaaatatacacaaagaaaagtag 25115718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 35600852 - 35600784
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    ||||||||||||||||| |||||   ||| || || |||||||||||   |||||||||||||||||||    
T  35600852 gtgtgttatttgaacaaccatttgagtgacaacttttgtgacaaccactaatttacaaagaaaagtaga 35600784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 21871636 - 21871563
Alignment:
Q  157 aggggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatctt 230  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||  |||||||||||    
T  21871636 aggggcggagccacctcttagtgagggtgtgcacctgcaccccctgagattgtaaaatttcttccaattatctt 21871563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 1907655 - 1907753
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||||||||| |||| || || | ||||||||||| ||||||||||||||   |  ||||| |||||||| ||| |||||||||||    
T  1907655 tgtgttatttgaacaatcatttagatgacaacttgtatgacaaccataaatttacaaagaaaaagcggaattgacacaaaaatcaaaacaatagagaga 1907753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 7663959 - 7664056
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||||||||||  ||| ||||| | ||||||||||| ||||||||||||||  ||  ||||| |||||||  |||||||||||||||    
T  7663959 tgtgttatttgaacaatcatttaggtgacaattt-tatgacaaccataaatttacaaagaaaaagaggtattgacacaaaaaccaaagcaatagagaga 7664056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 1415931 - 1416030
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag--aaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||| |||||  |||||||||||  |||||||||| ||||| ||||  |||| ||| ||||  |||||||| ||||||||||||||||    
T  1415931 gtgttatttgaacaattatttagttgataatttataggacaaccata-atttataaagaaaaaaataggcatttgtacaaaaactaaagcaatagagaga 1416029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 14498900 - 14498960
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||||||||| ||||||||||||| |||||| ||| ||||| ||| ||||    
T  14498900 tgttatttgaacaatcatttatatgataatttatgagacaactataaatttataaaaaaaa 14498960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 16199601 - 16199668
Alignment:
Q  6 aagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagt 73  Q
    |||||||||||||||| ||| ||||  |||||||||||||  ||||||||| ||||||||| ||||||    
T  16199601 aagtgtgttatttgaataattatttgtatgataatttatggtacaaccataaatttacaaaaaaaagt 16199668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 44977391 - 44977489
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||| |||||  | || || ||||| |||||||||| ||||||||||||||   |  ||||| |||||||  |||||||||||||||    
T  44977391 tgtgttatttgaacaaccatttgaacgaaaacttatgagacaaccataaatttacaaagaaaatggggtattgacacaaaaaccaaagcaatagagaga 44977489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 14500766 - 14500807
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaac 52  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  14500766 tgttatttgaacaatcatttatatgataatttatgagacaac 14500807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 28495039 - 28494958
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaa 90  Q
    |||||||||||||||| |||||| || | || || ||||||||||||| ||||||| |||||| |||  ||||| |||||||    
T  28495039 tgtgttatttgaacaaccatttaaattacaacttttgtgacaaccataaatttacacagaaaattaggtattgacacaaaaa 28494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 33616610 - 33616549
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| ||||||||||||||||    ||| ||||||||| |||||||||||||||    
T  33616610 tgacaaccatatttttacaaagaaaagtatgtgttggtacaaaaatcaaagcaatagagaga 33616549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 40936957 - 40937017
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||| || ||||||  ||| ||||||||||||||||||| ||||||||||||||    
T  40936957 gtgttatttgaataaccatttagctgacaatttatgtgacaaccata-atttacaaagaaaa 40937017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 43521035 - 43520975
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||||||||||||| ||  |||  |||||||||  ||||||||||||||    
T  43521035 tgttatttgaacaatcatttacatgacaacctataagacaaccatcaatttacaaagaaaa 43520975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 11167413 - 11167471
Alignment:
Q  12 gttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||| ||||| | |||||| |||||| ||||||||| ||||||||||||||    
T  11167413 gttatttgaacaaccatttgcttgataacttatgtaacaaccata-atttacaaagaaaa 11167471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 14255483 - 14255416
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtag 75  Q
    ||||||||||||||||| ||||||   || || || || |||||||||| ||||||||||||||||||    
T  14255483 gtgtgttatttgaacaaccatttatgcgacaacttttgggacaaccataaatttacaaagaaaagtag 14255416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 8848589 - 8848687
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||   ||||| |||||||||| |||||||| || |  ||| |||||||||  |   |||| ||||||||| |||||||||||||||    
T  8848589 tgtgttatttgaacatctatttagatgataatttttgtgacaatcaaaattttgcaaagaaaatgatgtattggtacaaaaatcaaagcaatagagaga 8848687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 9936275 - 9936341
Alignment:
Q  42 tatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    ||||||||||| |||| |||||||||||| ||| | |||||||| ||||  ||||||||||| ||||    
T  9936275 tatgtgacaactatatttttacaaagaaatgtatatattgatacgaaaaccaaagcaatagaaagat 9936341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 34134661 - 34134762
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaa-gaaaagtagacattgatacaaaaattaaagcaatagagag 106  Q
    ||||||||||||||||| |||||    || || |||| ||||||||||| ||||||||| ||| |||||   |||| || ||||| ||||||||||||||    
T  34134661 gtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaagagtaggttttgacacgaaaatcaaagcaatagagag 34134760  T
Q  107 at 108  Q
    ||    
T  34134761 at 34134762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 34431722 - 34431782
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||||||||   |||||| ||| |||||||||||| | ||||||||||||    
T  34431722 gtgttatttgaacaatcatttggttgataacttacgtgacaaccata-acttacaaagaaaa 34431782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 36643977 - 36644037
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||| |||||   ||| |||||||| |||||||||| ||||||||||||||    
T  36643977 gtgttatttgaacaaccatttggttgacaatttatgggacaaccata-atttacaaagaaaa 36644037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 45259217 - 45259278
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||| ||||| ||||||||||||||||    ||| ||||||||| |||||||||||||||    
T  45259217 tgacaaacatatttttacaaagaaaagtatgtgttggtacaaaaatcaaagcaatagagaga 45259278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 3412485 - 3412541
Alignment:
Q  48 acaaccatatatttacaaagaaaagtagacattgatac-aaaaattaaagcaataga 103  Q
    ||||||||| ||||||||||||||||||| ||||  || |||||| |||||||||||    
T  3412485 acaaccataaatttacaaagaaaagtagatattgccacaaaaaatcaaagcaataga 3412541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 9048292 - 9048360
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    |||||||||||||||||| | ||  |||||||||| ||||| |||||   ||||| |||||||||||||    
T  9048292 gtgtgttatttgaacaattaattgaatgataatttttgtgataaccactaatttataaagaaaagtaga 9048360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 20532354 - 20532418
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagt 73  Q
    ||||||||||||||||  ||||  ||||||| ||||| || ||||||| ||||| ||||||||||    
T  20532354 tgtgttatttgaacaactatttgtatgataacttatgggataaccataaatttataaagaaaagt 20532418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 22525889 - 22525984
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag-aaaagtagacattgatacaaaaattaaagcaatagaga 105  Q
    ||||||||||||||| |||||   |||||| || || |||||||||| |||||||||| |||||||| ||||   || ||||| |||||||||||||    
T  22525889 gtgttatttgaacaaccatttgattgataacttttgagacaaccata-atttacaaagaaaaagtaggcatttgcacgaaaatcaaagcaatagaga 22525984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 32628360 - 32628264
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||| |||||  ||||||| || || |||||| ||| ||||| ||| ||||  || |||| ||||||||| |||| |||||| ||||    
T  32628360 tgttatttgaacaaccattttaatgataacttttgagacaactataaatttataaaaaaaatgaggcattaatacaaaaactaaaacaatagtgaga 32628264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 213741 - 213840
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||||||||| ||||| ||||| || |||||||||| ||||| ||||||||||| |||| || |||||||  ||| ||| |||||||    
T  213741 gtgtgttatttgaacaatcatttccatgacaatttttgagacaaccataaatttataaagaaaagtaaacatggacacaaaaaccaaaacaacagagaga 213840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 12734903 - 12735002
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    ||||||||||||||||| ||||  |||||||||||||||||||| | | |||||||| |||||||||  ||||| |||||||| |||| |||| ||||||    
T  12734903 tgtgttatttgaacaataatttgtatgataatttatgtgacaactaaaaatttacaatgaaaagtaggtattgacacaaaaatcaaagtaatatagagat 12735002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 40517444 - 40517338
Alignment:
Q  2 aaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaata 101  Q
    ||||| |||| ||||||||||||||||||  |||| |  ||||  |||||||||| ||||||||||||||||||| ||||| || ||||| |||||||||    
T  40517444 aaagatgtgtattatttgaacaatcatttttatgacatcttataagacaaccataaatttacaaagaaaagtagatattgacacgaaaatcaaagcaata 40517345  T
Q  102 gagagat 108  Q
    || ||||    
T  40517344 gaaagat 40517338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 28798026 - 28798097
Alignment:
Q  159 gggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatctt 230  Q
    ||||||||||||||| |||||||| |||||||||||| ||| |||||| ||||| |||||||||| ||||||    
T  28798026 gggcggagccacctcttagtgaggctgtgcacctgcatcccttgaaattttaaattttcaaccaaatatctt 28798097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 13106659 - 13106561
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||| ||||||  ||| || || | | ||||||||| ||||||||||||||  ||  ||||| |||||||  |||||||||||||||    
T  13106659 tgtgttatttgaacaaccatttaggtgacaacttttataacaaccataaatttacaaagaaaaagaggtattgacacaaaaagcaaagcaatagagaga 13106561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 32752583 - 32752521
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||| |||||  ||||||||||||| ||||| |||  ||||||||||||||    
T  32752583 tgtgttatttgaacaaccatttcaatgataatttatgggacaatcattgatttacaaagaaaa 32752521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 39856217 - 39856119
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||  ||||  ||||||| || |  ||||| |||  ||| |||||||||| |||| ||||| |||||||| |||||||||||||||    
T  39856217 tgtgttatttgaacaactattttaatgataacttttaagacaatcatgaattaacaaagaaaaatagatattgacacaaaaatcaaagcaatagagaga 39856119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 10644692 - 10644793
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag-aaaagtagacattgatacaaaaattaaagcaatagagag 106  Q
    ||||||||||||||||| |||||    || || |||| ||||||||||| |||||||||| ||||||||   |||  || ||||||||||||||||||||    
T  10644692 gtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaattaaagcaatagagag 10644791  T
Q  107 at 108  Q
    ||    
T  10644792 at 10644793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 30439399 - 30439459
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||| |||||   |||||| |||||||||||||||| ||||||||||||||    
T  30439399 gtgttatttgaacaaccatttggttgataacttatgtgacaaccata-atttacaaagaaaa 30439459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 41639726 - 41639787
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| ||||||||||||||||    |||| |||||||| |||||||||||||||    
T  41639726 tgacaaccatatttttacaaagaaaagtatgtgttgacacaaaaatcaaagcaatagagaga 41639787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 144150 - 144210
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||| ||||| |||||  |||||||||| ||||| ||||||| ||||||||||||||    
T  144150 tgttatttcaacaaccatttctatgataatttttgtgataaccataaatttacaaagaaaa 144210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 8386261 - 8386209
Alignment:
Q  14 tatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaa 66  Q
    ||||||| || ||||||| ||||||||||||| ||||| ||||||||||||||    
T  8386261 tatttgagcagtcatttatatgataatttatgggacaatcatatatttacaaa 8386209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 37133754 - 37133848
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaataga 103  Q
    |||||||||| ||||  |||||| |||| || || ||||||||||| |  |||||||||||||  | | ||||| |||||||| |||||||||||    
T  37133754 tgtgttattttaacatccatttagatgacaacttttgtgacaaccaaaattttacaaagaaaatgatatattgacacaaaaatcaaagcaataga 37133848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 6440224 - 6440171
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaa 99  Q
    |||||||||||| ||||||||||||||||   ||||| |||||||| |||||||    
T  6440224 tgacaaccatatttttacaaagaaaagtatgtattgacacaaaaatcaaagcaa 6440171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 8103841 - 8103906
Alignment:
Q  32 catgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagc 97  Q
    |||||||||||||| ||||| ||||  ||||||||||||| || | ||||||| |||||| |||||    
T  8103841 catgataatttatgagacaaacataagtttacaaagaaaaataaatattgatataaaaatcaaagc 8103906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 38958444 - 38958505
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||||||||  |||| ||||| ||  ||||||||  ||||||||||||||    
T  38958444 gtgttatttgaacaatcattttaatgacaatttttggaacaaccatcaatttacaaagaaaa 38958505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 42619909 - 42619970
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| ||||||||||||||||    |||  |||||||| |||||||||||||||    
T  42619909 tgacaaccatatttttacaaagaaaagtatgtgttggcacaaaaatcaaagcaatagagaga 42619970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 45508711 - 45508651
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||  |||||  |||||||||||| |||||||||| ||||||||| ||||    
T  45508711 gtgttatttgaacaacaatttagttgataatttatgggacaaccata-atttacaaaaaaaa 45508651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 6445359 - 6445257
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa---gtagacattgatacaaaaattaaagcaatagaga 105  Q
    |||||||||||||| | |||||   ||| || ||||| |||||||||| ||||||||| ||||   ||||| ||| | |||||||| ||| |||||||||    
T  6445359 tgtgttatttgaacgaccatttgattgacaacttatgggacaaccataaatttacaaaaaaaaaaggtagatattaacacaaaaatcaaaacaatagaga 6445260  T
Q  106 gat 108  Q
    |||    
T  6445259 gat 6445257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 12656064 - 12656004
Alignment:
Q  47 gacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||| | ||||||||||||||||  |||||  |||||||| |||| ||||||||||    
T  12656064 gacaaccatgtttttacaaagaaaagtatgcattggcacaaaaatgaaagtaatagagaga 12656004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 33100400 - 33100460
Alignment:
Q  47 gacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||| ||| ||||||||||||||||   ||||| |||||||| |||| ||||||||||    
T  33100400 gacaaccttatttttacaaagaaaagtatgtattgacacaaaaatcaaagtaatagagaga 33100460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 37597416 - 37597321
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa-gtagacattgatacaaaaattaaagcaatagaga 105  Q
    ||||||||||||||||||| ||  ||| || ||||  |||||||||| |||||||||||||| ||||  ||| | || ||||| |||||||||||||    
T  37597416 gtgttatttgaacaatcatatagttgacaacttataagacaaccata-atttacaaagaaaaggtagggatttacacgaaaatcaaagcaatagaga 37597321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 14603637 - 14603538
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||||||||| ||||| ||||| || |||||||||| ||||| ||||||||||| |||| || |||||||  ||| ||| |||||||    
T  14603637 gtgtgttatttgaacaatcatttccatgacaatttttgagacaaccataaatttataaagaaaagtaaacatggacacaaaaaccaaaacaacagagaga 14603538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 39655003 - 39654905
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||  ||||| |||||||||| |  |||||||||| ||||||||||||||  ||  ||||| |||||||| |||||||||||||||    
T  39655003 tgtgttatttgaacaactatttagatgataatttttaagacaaccataaatttacaaagaaaatgaggtattgacacaaaaatcaaagcaatagagaga 39654905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 47803606 - 47803535
Alignment:
Q  159 gggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatctt 230  Q
    ||||||||||||||| |||||||| |||||||||||| ||| |||||| ||||| |||||||||| ||||||    
T  47803606 gggcggagccacctcttagtgaggctgtgcacctgcatcccttgaaattttaaattttcaaccaaatatctt 47803535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 7182528 - 7182467
Alignment:
Q  162 cggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaa 223  Q
    |||||||||||| ||||||||||||||||||||||||||||  ||  |||||||||||||||    
T  7182528 cggagccacctcttagtgagggtgtgcacctgcaccccctgtgattgtaaaatttcaaccaa 7182467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 27371327 - 27371222
Alignment:
Q  2 aaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaata 101  Q
    ||||| |||||||||||||||||  |||||  ||| || ||||| |||||||||| ||||||||||||||||||  ||||| |  |||| | || |||||    
T  27371327 aaagaggtgtgttatttgaacaacaatttatttgagaacttatgagacaaccataaatttacaaagaaaagtaggtattgacatgaaaactcaaacaata 27371228  T
Q  102 gagaga 107  Q
    ||||||    
T  27371227 gagaga 27371222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 12595522 - 12595620
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||| |||||  |||| ||||| || |||||||||| ||||| |||| |||||||  ||||| || ||||  ||| |||||||||||    
T  12595522 tgtgttatttgaacaaccattttgatgacaatttttgggacaaccataaatttataaaggaaagtaggtattgacacgaaaaccaaaacaatagagaga 12595620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 42510522 - 42510466
Alignment:
Q  47 gacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaataga 103  Q
    |||||||||| |||||||||||||||||||  || |||||||||| ||| |||||||    
T  42510522 gacaaccataaatttacaaagaaaagtagatgttaatacaaaaataaaaacaataga 42510466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 46767837 - 46767932
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||| ||||||||| |||||||||  |||||| ||| ||||||||| |||| |||| ||||| |  |||| |||| ||||| |||||    
T  46767837 tgttatttgaacaaccatttacat-ataatttataggacaactatagatttacaaaaaaaattagatattgacatgaaaactaaaacaataaagaga 46767932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 47744404 - 47744503
Alignment:
Q  9 tgtgttatttgaacaatcatttacat-gataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||  ||||  || ||||| || || ||||||||||  ||||||||||||| | || |||| |||||||| ||||||||||||||||    
T  47744404 tgtgttatttgaacaactattttgattgataacttttgggacaaccataattttacaaagaaaaat-gatattggtacaaaaactaaagcaatagagaga 47744502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 52895404 - 52895308
Alignment:
Q  13 ttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa-gtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||||||||||| |||||   ||| || | || ||||||||||  |||||||||||||| ||||| ||||| || ||||| ||||||||||||||||    
T  52895404 ttatttgaacaaccatttgattgacaactcatttgacaaccatggatttacaaagaaaatgtagatattgacacgaaaatcaaagcaatagagagat 52895308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 3078792 - 3078899
Alignment:
Q  2 aaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaa-gaaaagtagacattgatacaaaaattaaagcaat 100  Q
    ||||| |||| ||||||||||||||||||    || || |||| ||||||||||| ||||||||| |||||||||   |||  || ||||| ||||||||    
T  3078792 aaagaggtgtcttatttgaacaatcatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagcaat 3078891  T
Q  101 agagagat 108  Q
    ||||||||    
T  3078892 agagagat 3078899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 21025782 - 21025683
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||||||| ||   ||| || || |||||||||||   ||||||||||||||||||| | | ||||  |||  |||||||||||||||    
T  21025782 gtgtgttatttgaacaatcaattgagtgacaacttttgtgacaaccactaatttacaaagaaaagtagatagttatacggaaaccaaagcaatagagaga 21025683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 21172458 - 21172360
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag-aaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||||||||||||||  |||||  |||||||||||| || || |||| |||||||||| ||||||||| |||||||| ||||  ||| ||||| ||||||    
T  21172458 gtgttatttgaacaactatttagttgataatttatgggataatcata-atttacaaagaaaaagtagatattgatacgaaaaccaaaacaataaagagat 21172360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 23662211 - 23662270
Alignment:
Q  12 gttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||| ||||||  ||| ||||||| ||| ||||||| ||||||||||||||    
T  23662211 gttatttgaacaaccatttaattgacaatttatttgataaccataaatttacaaagaaaa 23662270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 12139030 - 12138933
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag-aaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||||||||||||| |||||   |||||| |||||| ||||||||| |||||||||| ||||||||  |||   |||||||| |||| |||||||||||    
T  12139030 tgttatttgaacaaccatttgattgataacttatgtaacaaccata-atttacaaagaaaaagtaggtatttgcacaaaaatcaaagtaatagagagat 12138933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 24990290 - 24990232
Alignment:
Q  13 ttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||| ||||||||  |||| || ||||| |||||||||| ||||||||||||||    
T  24990290 ttatttgaataatcatttgtatgacaacttatgggacaaccataaatttacaaagaaaa 24990232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 37514025 - 37514123
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa-gtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||||||||||||| |||||    || ||||||| ||||||||||| |||||||||||||| ||||   |||  || ||||| ||||||||||||||||    
T  37514025 tgttatttgaacaaccatttgatagagaatttatttgacaaccataaatttacaaagaaaaagtaggttttggcacgaaaatcaaagcaatagagagat 37514123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 47288262 - 47288196
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtag 75  Q
    ||||||||||||| || |||||   ||||||||| ||  ||||||||| ||||||||||||||||||    
T  47288262 tgtgttatttgaataaccatttgtgtgataatttttggaacaaccataaatttacaaagaaaagtag 47288196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 50831647 - 50831745
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||| |||||   ||| || || || ||||||||||  |||||||||||||  ||   |||| |||||||| |||||||||||||||    
T  50831647 tgtgttatttgaacaaccatttgattgacaacttttgggacaaccataattttacaaagaaaaagaggtcttgacacaaaaatcaaagcaatagagaga 50831745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 52790749 - 52790687
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||| || ||||||||  ||||||||||||   ||||||||| ||||||||||||||    
T  52790749 tgtgttatttaaagaatcatttgaatgataatttatagaacaaccataaatttacaaagaaaa 52790687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 11068874 - 11068769
Alignment:
Q  2 aaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaata 101  Q
    |||||| ||||||||||||||| |||| ||  ||| || || |||| |||||| |  ||||||||| |||  || || ||| |||||||| |||||||||    
T  11068874 aaagaattgtgttatttgaacattcatatatgtgacaacttttgtggcaaccaaaattttacaaaggaaatgaggcagtgacacaaaaatcaaagcaata 11068775  T
Q  102 gagaga 107  Q
    ||||||    
T  11068774 gagaga 11068769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 16019619 - 16019558
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| |||| |||||||| ||  | |||| |||||||| |||||||||||||||    
T  16019619 tgacaaccatatttttataaagaaaaatatgcgttgacacaaaaatcaaagcaatagagaga 16019558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 24509273 - 24509346
Alignment:
Q  3 aagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    |||| |||||||||||||||||  ||||   ||||||||| |||||||||||   |||||||||||||| ||||    
T  24509273 aagaggtgtgttatttgaacaactatttgagtgataatttttgtgacaaccactaatttacaaagaaaaataga 24509346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 37997408 - 37997335
Alignment:
Q  34 tgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||| ||| ||||||| |  |||||||||||||  ||  ||||| |||||||| |||||||||||||||    
T  37997408 tgataatttttgttacaaccaaaattttacaaagaaaatgaggtattgacacaaaaatcaaagcaatagagaga 37997335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 46405867 - 46405927
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||||||||   ||||||||| |  |||||||||| ||||||||||||||    
T  46405867 gtgttatttgaacaatcatttggttgataattttttggacaaccata-atttacaaagaaaa 46405927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 46665123 - 46665184
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||||||||||||||||   ||||  | |||||| ||||||| |||||||    
T  46665123 tgacaaccatatatttacaaagaaaagtatgtattggcataaaaatcaaagcaaaagagaga 46665184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 10474010 - 10474102
Alignment:
Q  15 atttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||| ||||||| || | || || | ||||||||||| ||||||||||||||  |   ||||| |||||||| |||| ||||||||||    
T  10474010 atttgaacactcatttagattacaacttttatgacaaccataaatttacaaagaaaaagaagtattgacacaaaaatcaaagtaatagagaga 10474102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 31574869 - 31574929
Alignment:
Q  47 gacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||| | |||||||||||||  |   |||||||||||||| |||||||||||||||    
T  31574869 gacaaccatctttttacaaagaaaatcatgtattgatacaaaaatcaaagcaatagagaga 31574929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 35874832 - 35874892
Alignment:
Q  47 gacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||| ||| ||||||||||||||||| | ||||||||  |||| ||| |||||||||||    
T  35874832 gacaactataaatttacaaagaaaagtatatattgatacggaaatcaaaacaatagagaga 35874892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 33599137 - 33599044
Alignment:
Q  13 ttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| |||||| |||||||||| | ||||||| ||| ||||||||||||||  ||| ||||| || |||||||||||||||||||||    
T  33599137 ttatttgaacaaccatttatatgataatttttatgacaactataaatttacaaagaaaaagagatattgacac-aaaattaaagcaatagagaga 33599044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 21353340 - 21353436
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagaga 105  Q
    ||||||||||||| || ||||||||||| || ||||| |||||  ||| |||||||||||||| ||   ||| |||| ||||| |||||||||||||    
T  21353340 tgtgttatttgaataaacatttacatgacaacttatgggacaaatatagatttacaaagaaaaatatgtattaatacgaaaatcaaagcaatagaga 21353436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 9939317 - 9939423
Alignment:
Q  3 aagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaa-gaaaagtagacattgatacaaaaattaaagcaata 101  Q
    |||| ||||||||||||||||| |||||    || ||||||| ||||||||||| ||||||||| |||||||||   |||  || ||||| |||||||||    
T  9939317 aagaggtgtgttatttgaacaaccatttgatagacaatttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagcaata 9939416  T
Q  102 gagagat 108  Q
    |||||||    
T  9939417 gagagat 9939423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 28597071 - 28597157
Alignment:
Q  5 gaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaat 91  Q
    |||||||||||||| |||||| ||||  |  ||||||||||  ||||||||| ||||| ||||||||||| | |||||||| |||||    
T  28597071 gaagtgtgttatttaaacaattatttgtactataatttatgaaacaaccataaatttataaagaaaagtaaatattgatacgaaaat 28597157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 33958188 - 33958249
Alignment:
Q  46 tgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||| ||||||||||||||  ||| ||||| |||||||  |||||||||||||||    
T  33958188 tgacaaccataaatttacaaagaaaaagagatattgacacaaaaaccaaagcaatagagaga 33958249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 15711380 - 15711466
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaa 95  Q
    |||||||||||||| || |||||| || | ||||||||  ||||  ||| ||||||||||||||||||||||| | || |||||||||    
T  15711380 gtgtgttatttgaataaccatttatataacaatttatgaaacaattata-atttacaaagaaaagtagacattaacacgaaaattaaa 15711466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 5042426 - 5042366
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||||| ||   |||||| |||| |||||||||||| |||||||||||||    
T  5042426 gtgttatttgaacaatcaatttggtgataacttatttgacaaccatat-tttacaaagaaaa 5042366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 6940040 - 6940141
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaa-gaaaagtagacattgatacaaaaattaaagcaatagagag 106  Q
    ||||||||||||||||| |||||    || || |||| ||||||||||| ||||||||| |||||||||   |||  || ||||| ||||||||||||||    
T  6940040 gtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaaggaaaagtaggttttggcacgaaaatcaaagcaatagagag 6940139  T
Q  107 at 108  Q
    ||    
T  6940140 at 6940141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 13310069 - 13310000
Alignment:
Q  2 aaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||| |||||||||||||||  |||||| |||| ||||| || ||||| || || |||||||||||||    
T  13310069 aaagaattgtgttatttgaacatccatttagatgacaatttttgagacaatcaaatttttacaaagaaaa 13310000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 15952938 - 15952998
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||| |||||   ||| || |||||||||||||||| ||||||||||||||    
T  15952938 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccata-atttacaaagaaaa 15952998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 41175599 - 41175659
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||| |||||   ||| || |||||||||||||||| ||||||||||||||    
T  41175599 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccata-atttacaaagaaaa 41175659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 34692 - 34749
Alignment:
Q  16 tttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagt 73  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  34692 tttgaacaaccatttacttgataatttatgtgacaaccatatattttcaaagaaaagt 34749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 4820546 - 4820448
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||  ||||||||||||| || || ||||| || |  |||||||||||||  || |||||| |||||||| |||||||||||||||    
T  4820546 tgtgttatttgaacaactatttacatgataacttttgagacaatcaaaattttacaaagaaaatgaggcattgacacaaaaatcaaagcaatagagaga 4820448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 30956249 - 30956152
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||||||||||||| |||||| |||| || ||||| |||||||||| |||||||||||||| |||| ||||  || || || ||| ||||||||||||    
T  30956249 tgttatttgaacaaccatttatatgaaaacttatgggacaaccatagatttacaaagaaaattagatattggcacgaagatcaaatcaatagagagat 30956152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10826690 - 10826615
Alignment:
Q  1 taaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    |||||||||||||||||||||||| |||||   |||||| || |||||||||||   |||||||||||||||||||    
T  10826690 taaagaagtgtgttatttgaacaaccatttgagtgataacttttgtgacaaccactaatttacaaagaaaagtaga 10826615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 30945993 - 30945894
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||||||||||||||| |||||  |||| || |||||  ||||||||| ||||||||||||||||||| ||||  || ||||| ||| ||||||| ||||    
T  30945993 tgtgttatttgaacaaccatttgtatgaaaacttatggaacaaccatagatttacaaagaaaagtagatattggcacgaaaatcaaatcaatagatagat 30945894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 277170 - 277072
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||| |||| || |||| |||| ||||| ||||||||||| |  |||||||||||||  | | ||||| |||||||| |||||||||||||||    
T  277170 tgtgttatttaaacattcctttagatgacaatttttgtgacaaccaaaattttacaaagaaaatgatatattgacacaaaaatcaaagcaatagagaga 277072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 30621917 - 30621826
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag-aaaagtagacattgatacaaaaattaaagcaata 101  Q
    |||||||||||||| |||||   |||||| |||||  | |||||||||||||||||| ||||||||| ||||| || |||| ||||||||||    
T  30621917 tgttatttgaacaaccatttgattgataacttatggaataaccatatatttacaaagaaaaagtagatattgacacgaaaactaaagcaata 30621826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 32295354 - 32295304
Alignment:
Q  58 atttacaaagaaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||| ||||||    
T  32295354 atttacaaagaaaagtagatattgatacaaaaatcaaaacaataaagagat 32295304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 2159197 - 2159270
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattga 82  Q
    |||||||||| ||||||||| |  ||||||| |||||  ||||||||| |||||||||||||| |||| |||||    
T  2159197 tgtgttatttaaacaatcatgtgtatgataacttatggaacaaccataaatttacaaagaaaaatagatattga 2159270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 3552042 - 3552109
Alignment:
Q  4 agaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||| |||||||||||||||| |||||  ||||||| || ||||| || |||| ||||||||||||||    
T  3552042 agaattgtgttatttgaacaaccatttggatgataacttttgtgataatcataaatttacaaagaaaa 3552109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 25127721 - 25127820
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||||| |||||    || || || || |||||||||| ||||||||||||||||||  ||||| ||  |||  |||||||||||||||    
T  25127721 gtgtgttatttgaacaaccatttgtgcgacaaattctgggacaaccataaatttacaaagaaaagtaggtattgacacggaaaccaaagcaatagagaga 25127820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 31749543 - 31749445
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag-aaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||||||||||||||||||||   ||| || ||| | |||||||||| |||||||||| |||| |||| ||| | || ||||||||| ||||||||||||    
T  31749543 gtgttatttgaacaatcatttgattgacaacttaagagacaaccata-atttacaaagaaaaaatagatatttacacgaaaattaaaacaatagagagat 31749445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 5028160 - 5028257
Alignment:
Q  11 tgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag-aaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    ||||||||||||||||||||   |||||| ||||| |||||||||| ||||| |||| ||||||||| ||| | || ||||  ||||||||| ||||||    
T  5028160 tgttatttgaacaatcatttggttgataacttatgagacaaccata-atttataaagaaaaagtagatatttacacgaaaaccaaagcaataaagagat 5028257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 20998041 - 20998135
Alignment:
Q  13 ttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||| |||||  || | ||  |||| |||||| ||| ||||||||||||||  ||  |||||||||||||  |||||||||||||||    
T  20998041 ttatttgaacaaccattttaataacaacgtatgggacaactataaatttacaaagaaaatgaggtattgatacaaaaaccaaagcaatagagaga 20998135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 33656950 - 33656888
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||| |||||   ||| ||||||| ||||||||||| ||||||||| ||||    
T  33656950 tgtgttatttgaacaaccatttgattgacaatttatttgacaaccataaatttacaaaaaaaa 33656888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 2241918 - 2242013
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagaga 105  Q
    ||||||||||||||  || |||||||||||| || ||||||||||| |    |||||||||||  || |||||| |||||||  |||||||||||||    
T  2241918 tgtgttatttgaactttc-tttacatgataacttttgtgacaaccaaaataatacaaagaaaatgaggcattgacacaaaaaccaaagcaatagaga 2242013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 3853249 - 3853297
Alignment:
Q  59 tttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||  ||| ||||| |||||||| |||||||||||||||    
T  3853249 tttacaaagaaaatgagatattgacacaaaaatcaaagcaatagagaga 3853297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 11014139 - 11014079
Alignment:
Q  48 acaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||| |||| ||||||||||||||||||| |||| ||| |||| |||| ||||| ||||||    
T  11014139 acaatcataaatttacaaagaaaagtagatattggtacgaaaactaaaacaataaagagat 11014079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 31413661 - 31413605
Alignment:
Q  52 ccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    ||||| |||||||||||| |||||  ||| |||| ||||| ||||||||||||||||    
T  31413661 ccatagatttacaaagaatagtaggtattaatacgaaaatcaaagcaatagagagat 31413605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 8447914 - 8447816
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag-aaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    ||||||||||||||||||||||  |||||| ||||||||||| |||| |||||||||| |||||| || |||   ||||||| |||| ||||||||||||    
T  8447914 gtgttatttgaacaatcatttagttgataacttatgtgacaatcata-atttacaaagaaaaagttgatatttgcacaaaaactaaaacaatagagagat 8447816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 11597817 - 11597749
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    ||||||||||||||||  ||||| | ||| || ||||| |||||||||| |||||||||||||||||||    
T  11597817 gtgtgttatttgaacatccatttgcttgacaacttatgggacaaccatagatttacaaagaaaagtaga 11597749  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 18639603 - 18639695
Alignment:
Q  13 ttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagaga 105  Q
    ||||||||||||||||||  |||| ||||||||  ||||| | ||||||||||||| ||||||  ||||| || |||| |||| |||||||||    
T  18639603 ttatttgaacaatcatttgtatgacaatttatggaacaacaaaatatttacaaagataagtaggtattgacacgaaaactaaaacaatagaga 18639695  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 31433670 - 31433570
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||||||  ||||  ||||||| ||||| |||||||||| |||||||||| || ||||  ||||| || |||| ||||  ||||||||||    
T  31433670 gtgtgttatttgaacaactatttgtatgataacttatgagacaaccatagatttacaaagtaatgtaggtattgacacgaaaactaaaataatagagaga 31433571  T
Q  108 t 108  Q
    |    
T  31433570 t 31433570  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 12004712 - 12004666
Alignment:
Q  157 aggggcggagccacctcatagtgagggtgtgcacctgcaccccctga 203  Q
    ||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  12004712 aggggcggagccacctcttagtgagggtgtgcacttgcaccctctga 12004666  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 12128044 - 12127976
Alignment:
Q  9 tgtgttatttgaacaatcatttacat-gataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    |||||||||||||||| |||||  || ||||| ||||| |||||||||| |||| ||||||||||||||    
T  12128044 tgtgttatttgaacaaccatttgtattgataacttatgggacaaccatagatttccaaagaaaagtaga 12127976  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 43560385 - 43560317
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    |||||||||||||||||||||||   ||| ||||| |||||||||||   |||||||| ||||||||||    
T  43560385 gtgtgttatttgaacaatcatttgagtgacaatttttgtgacaaccactaatttacaaggaaaagtaga 43560317  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 39712562 - 39712491
Alignment:
Q  5 gaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    |||||||||||||||||||| |||||   |||||| || |||||||||||   |||||||||| ||||||||    
T  39712562 gaagtgtgttatttgaacaaccatttgagtgataacttttgtgacaaccactaatttacaaaggaaagtaga 39712491  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 5486074 - 5485981
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaag-aaaagtagacattgatacaaaaattaaagcaataga 103  Q
    ||||||||||||||||||||||| ||| || ||||   ||||||||| |||||||||| ||||||||| | | |||| ||||| ||| |||||||    
T  5486074 gtgttatttgaacaatcatttacttgacaacttataaaacaaccata-atttacaaagaaaaagtagaaaattatacgaaaatcaaaacaataga 5485981  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 21093288 - 21093349
Alignment:
Q  47 gacaaccatatatttacaaagaaaa-gtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||||||||| |||||||||||||| ||||| ||| |||| ||||| ||||||||||||||||    
T  21093288 gacaaccata-atttacaaagaaaaagtagatattaatacgaaaatcaaagcaatagagagat 21093349  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 29147766 - 29147823
Alignment:
Q  10 gtgttatttgaacaatca-tttacatgataatttatgtgacaaccatatatttacaaag 67  Q
    |||||||||||||||||| |||   ||||||||||||||||||||||| ||||||||||    
T  29147766 gtgttatttgaacaatcaatttggttgataatttatgtgacaaccata-atttacaaag 29147823  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 39849045 - 39849143
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||| |  |||||  ||||||||||||| |||| | ||| ||||| ||||||||  ||||||||| |||||||  ||| |||||| ||||    
T  39849045 tgtgttatttgaatagccatttgtatgataatttatgggacatctatagatttataaagaaaatgagacattgacacaaaaaacaaaacaatagtgaga 39849143  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 51571238 - 51571332
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaataga 103  Q
    |||||||||||||||| |||||   ||| ||||| || ||||||||||  |||||||||||||  ||  ||||| |||||||  |||||||||||    
T  51571238 tgtgttatttgaacaaccatttgattgacaatttttgggacaaccataattttacaaagaaaaagaggtattgacacaaaaaccaaagcaataga 51571332  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 1863148 - 1863091
Alignment:
Q  33 atgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaa 90  Q
    ||||||| |||||  ||||||||| ||||| ||||||||||||| ||| |||||||||    
T  1863148 atgataacttatgaaacaaccataaatttataaagaaaagtagatattaatacaaaaa 1863091  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 12238814 - 12238883
Alignment:
Q  35 gataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagag 104  Q
    ||||||||||| ||||| || |||| ||||| ||||  |||| |||||||||||||| ||| ||||||||    
T  12238814 gataatttatgagacaatcaaatatatacaatgaaatatagatattgatacaaaaatcaaatcaatagag 12238883  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 33358051 - 33358111
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||||||||||||| |||||   ||| || |||||||||||||||| ||||||||||||||    
T  33358051 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccata-atttacaaagaaaa 33358111  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 36779162 - 36779222
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    |||||||||||||||||| ||   ||||||||||| |||||| ||||| |||||||||||||    
T  36779162 gtgttatttgaacaatcaatttggtgataatttatttgacaatcatat-tttacaaagaaaa 36779222  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 37516701 - 37516604
Alignment:
Q  10 gtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||| |||||   |||| |||| ||| ||||||||  |||||||||| |||||||| | ||| |  ||||  |||||||||||||||    
T  37516701 gtgttatttgaacaaccatttgagtgatcatttttgtaacaaccattaatttacaaaggaaagtagatagtgacatgaaaaccaaagcaatagagaga 37516604  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 51436655 - 51436724
Alignment:
Q  2 aaagaagtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaa 71  Q
    ||||| || ||||||||||||||| ||||   ||| || |||| ||||||||||| ||||||||||||||    
T  51436655 aaagatgtatgttatttgaacaataatttggttgacaacttatatgacaaccatagatttacaaagaaaa 51436724  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 32158687 - 32158755
Alignment:
Q  8 gtgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtaga 76  Q
    ||||||||||||||| ||||||| ||||| || ||| |  |||| |||| |||||||||||||| ||||    
T  32158687 gtgtgttatttgaacgatcatttgcatgacaacttacgaaacaatcataaatttacaaagaaaattaga 32158755  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 43775335 - 43775287
Alignment:
Q  59 tttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    |||||||||||||  ||| ||||||||||||| |||| |||||||||||    
T  43775335 tttacaaagaaaatgagatattgatacaaaaactaaaacaatagagaga 43775287  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 49559131 - 49559191
Alignment:
Q  48 acaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagagat 108  Q
    |||| ||||| ||||||||||||||||    ||| || |||||||||||||||||||||||    
T  49559131 acaatcatatttttacaaagaaaagtatgtgttggtataaaaattaaagcaatagagagat 49559191  T

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Target: scaffold0087 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 53253 - 53351
Alignment:
Q  9 tgtgttatttgaacaatcatttacatgataatttatgtgacaaccatatatttacaaagaaaagtagacattgatacaaaaattaaagcaatagagaga 107  Q
    ||||||||||||||| | ||||| ||||||| || |  |||||||| | ||||| ||||||||  ||| ||||| ||||||| |||| ||| |||||||    
T  53253 tgtgttatttgaacatttatttatatgataagtttttagacaaccaaaaatttataaagaaaatgagatattgacacaaaaactaaaacaaaagagaga 53351  T

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