View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10745_low_31 (Length: 249)
Name: NF10745_low_31
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 13629208 - 13629027
Alignment:
| Q |
1 |
cgacaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatgatttccgtatggttatg----tat |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13629208 |
cgacaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatgatttccgtatggttatgtatgtat |
13629109 |
T |
|
| Q |
97 |
gacctctggttacaccatcacaccattcagtactgatgctaagtgcttggttgtttttgcggtagatgaatgtccaacacgc |
178 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13629108 |
gacctctggttacgccatcacaccattcagtactgatactaagtgcttggttgtttttgcggtagatgaatgtccaacacgc |
13629027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 13511432 - 13511603
Alignment:
| Q |
3 |
acaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatgatttccgtatggttatgtatgacctc |
102 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
13511432 |
acaagaaagttatgtcatcttgtatcagattcagaaacacttccagtggaattcgcctccagtcagatatgatgccttccatatggttatgtatgacctc |
13511531 |
T |
|
| Q |
103 |
tggttacaccatcacaccattcagtactgatgctaagtgcttggttgtttttgcggtagatgaatgtccaac |
174 |
Q |
| |
|
||||||| ||||||||| || || ||||||| ||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
13511532 |
tggttacgccatcacacaatccaatactgattctaagggcttggttgtttctgcggtagatgaatgtccaac |
13511603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 21778995 - 21778824
Alignment:
| Q |
3 |
acaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatgatttccgtatggttatgtatgacctc |
102 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
21778995 |
acaagaaagttatctcatcttgtatcagattcagaaacacttccagtggaattcgcctccagtcagatatgatgctttccatatggttatgtatgacctc |
21778896 |
T |
|
| Q |
103 |
tggttacaccatcacaccattcagtactgatgctaagtgcttggttgtttttgcggtagatgaatgtccaac |
174 |
Q |
| |
|
||||||| |||||||||||| || ||||||| ||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
21778895 |
tggttacgccatcacaccatccaatactgattctaagggcttggttgtttctgcagtagatgaatgtccaac |
21778824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University