View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_low_33 (Length: 243)
Name: NF10745_low_33
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 30059677 - 30059448
Alignment:
| Q |
1 |
tggtgagttccaacacgagggatattataattattgttgtcgtgttttactaattgttttacatctctagccaataccttcaacaacagtaaacatc--- |
97 |
Q |
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| T |
30059677 |
tggtgagttccaacacgagggatactataattattgttgttgtgttttactaattgttttacatctctagccaataccttcaacaacagtaaacatcgat |
30059578 |
T |
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| Q |
98 |
-tcgattctttatatgatacatttcattccattatatggaatccctaaaatatggaaaatctattctaaaaagaagtaaatgagtagtgaggtaatgagt |
196 |
Q |
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| T |
30059577 |
ctcgattctttatatgatacatttcattccattatatggaatccctaaaatatggaaagtctattctaaaaagaagtaaatgagtagtgaggtaatgagt |
30059478 |
T |
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| Q |
197 |
gaggaagggtgagcttagccgtagttagtt |
226 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30059477 |
gaggaagggtgagcttagccgtagttagtt |
30059448 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 15062023 - 15061959
Alignment:
| Q |
144 |
aaatatggaaaatctattctaaaaagaagtaaatgagtagtgaggtaatgagtgaggaagggtga |
208 |
Q |
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| T |
15062023 |
aaatatggaaagtctattctagaaaagagaaaatgagttgtgaggtaatgagtgaagaagcgtga |
15061959 |
T |
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