View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_low_37 (Length: 240)
Name: NF10745_low_37
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 12341794 - 12341991
Alignment:
| Q |
1 |
tttctcatttgaattcttttatcttttcatttaatttggtataaaaacttgttttattaaagaatttatgagaatattaatattaaataaataaaattag |
100 |
Q |
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| T |
12341794 |
tttctcatttgaattcttttatcttttcatttaatttggtataaaaacttgttttattaaagaatttatgagaatattaatattaaataaataaaattag |
12341893 |
T |
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| Q |
101 |
ttagaattttgcttgtatatctaaaacacctaaaaatctcagacccctaaataaaattgattttgacatatatttgagtatacagtagtttttatatt |
198 |
Q |
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| T |
12341894 |
ttagaattttgcttgtatatctaaaacacctaaaaatctcagacccctaaataaaattgattttgacatatatttgagtatacagtagtttttatatt |
12341991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 12342072 - 12342100
Alignment:
| Q |
195 |
tatttcagggggccattacgagaattatt |
223 |
Q |
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| T |
12342072 |
tatttcagggggccattacgagaattatt |
12342100 |
T |
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