View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_low_39 (Length: 237)
Name: NF10745_low_39
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 13007776 - 13007870
Alignment:
| Q |
60 |
ttacctgttacctctggacaatggagacaatgaatttgaaacaacagggagagacaacgtttaatactgctgcggagacaacgataatggtgacg |
154 |
Q |
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| T |
13007776 |
ttacctgttaccttgagacaatggagacaatgaatttgaaacaacagggagagacaacgtttaatactgctgcggagacaacgataatggtgacg |
13007870 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 25506552 - 25506448
Alignment:
| Q |
105 |
agggagagacaacgtttaatactgctgcggagacaacgataatggtgacggcgatggcaatcaaggagcacgtcggtggtaatcaatggagcacggcgac |
204 |
Q |
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| T |
25506552 |
agggtgagacaacgtcgaatactggtgcggagacgacgacaacggtgacaacgatggcaatcaagaagcacagcggtggtaatcaatggagcacggcggc |
25506453 |
T |
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| Q |
205 |
gacgt |
209 |
Q |
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| T |
25506452 |
gacgt |
25506448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 16749183 - 16749107
Alignment:
| Q |
133 |
ggagacaacgataatggtgacggcgatggcaatcaaggagcacgtcggtggtaatcaatggagcacggcgacgacgt |
209 |
Q |
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| T |
16749183 |
ggagacaacgacaacggtgacgacgatggcaatcaagaagcacggcggtggtaataaatggactacggcgacgacgt |
16749107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 25871491 - 25871404
Alignment:
| Q |
122 |
aatactgctgcggagacaacgataatggtgacggcgatggcaatcaaggagcacgtcggtggtaatcaatggagcacggcgacgacgt |
209 |
Q |
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| T |
25871491 |
aatactggtgtggagacaacgacaacggtgacggggatggcaatcaagaagcatggcagtggtaataaatggactacggcgacgacgt |
25871404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 31120989 - 31121070
Alignment:
| Q |
105 |
agggagagacaacgtttaatactgctgcggagacaacgataatggtgacggcgatggcaatcaaggagcacgtcggtggtaa |
186 |
Q |
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| T |
31120989 |
agggtgagacaacgtcgaatactggtgcggagacgacgacaacggtgacaacgatggcaatcaagaagcacaacggtggtaa |
31121070 |
T |
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