View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10745_low_40 (Length: 235)
Name: NF10745_low_40
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 48173274 - 48173475
Alignment:
| Q |
16 |
atgaattcatagaccaaaagacgttgatcgccatcagcacaatatccagtgagtttgacaagattttcatggtttaagagactcaacatcaaaacctcaa |
115 |
Q |
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| T |
48173274 |
atgaattcatagaccaaaagacgttgatcgccatcagcacaataaccagtgagtttgacaagattttcatggtttaagagactcaacatcaaaacctcaa |
48173373 |
T |
|
| Q |
116 |
ccagaaattctttacttccttgaatcccatttcgatcaagttgcttcactgctaccacctagagagaggagaaaaaacacacattcaaacacatgtaata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48173374 |
ccagaaattctttacttccttgaatcccatttcgatcaagttgcttcactgctaccacctagagagaggagaaaaaacacacattcaaacacatgtaata |
48173473 |
T |
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| Q |
216 |
aa |
217 |
Q |
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|| |
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| T |
48173474 |
aa |
48173475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 21140111 - 21140217
Alignment:
| Q |
16 |
atgaattcatagaccaaaagacgttgatcgccatcagcacaatatccagtgagtttgacaagattttcatggtttaagagactcaacatcaaaacctcaa |
115 |
Q |
| |
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||||| ||||| ||||| || | |||||| |||||||||||||||||| | || || || ||||||| ||| | ||| || ||||||||||| || |||| |
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| T |
21140111 |
atgaactcatataccaatagtctttgatctccatcagcacaatatccaattagattaactagatttttatgatgtaaaaggctcaacatcaacacttcaa |
21140210 |
T |
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| Q |
116 |
ccagaaa |
122 |
Q |
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| ||||| |
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| T |
21140211 |
caagaaa |
21140217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 35287045 - 35286977
Alignment:
| Q |
20 |
attcatagaccaaaagacgttgatcgccatcagcacaatatccagtgagtttgacaagattttcatggt |
88 |
Q |
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||||||| ||||||||||||||||| ||||| |||||||| ||| |||| ||||||||||||||||||| |
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| T |
35287045 |
attcatataccaaaagacgttgatcaccatctgcacaataaccaatgagattgacaagattttcatggt |
35286977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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