View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10745_low_41 (Length: 228)

Name: NF10745_low_41
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10745_low_41
NF10745_low_41
[»] chr1 (5 HSPs)
chr1 (1-228)||(42203009-42203228)
chr1 (1-228)||(42211877-42212096)
chr1 (72-205)||(42421181-42421306)
chr1 (72-204)||(42217915-42218046)
chr1 (1-51)||(42421338-42421388)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 42203009 - 42203228
Alignment:
Q  1 agaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaattggtcataataggcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42203009 agaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaattggtcataataggcaa 42203108  T
Q  101 cggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatcctgaggttgatacct 200  Q
    ||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42203109 cggagaac--------tagaagacagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatcctgaggttgatacct 42203200  T
Q  201 atgactctatgagagcgagaatagtttc 228  Q
    ||||||||||||||||||||||||||||    
T  42203201 atgactctatgagagcgagaatagtttc 42203228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 42211877 - 42212096
Alignment:
Q  1 agaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaattggtcataataggcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42211877 agaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaattggtcataataggcaa 42211976  T
Q  101 cggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatcctgaggttgatacct 200  Q
    ||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42211977 cggagaac--------tagaagacagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatcctgaggttgatacct 42212068  T
Q  201 atgactctatgagagcgagaatagtttc 228  Q
    ||||||||||||||||||||||||||||    
T  42212069 atgactctatgagagcgagaatagtttc 42212096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 42421306 - 42421181
Alignment:
Q  72 gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt 171  Q
    |||||||| ||||||||||||| | ||||||||||||||| |||        || |||||||||||||||||| ||||||||||||||||||||||||||    
T  42421306 gaattacatgaattggtcataacaagcaacggagaactaggaga--------cagttttgaaaccgtctcatctcttcttaggaaactgaaagactgcgt 42421215  T
Q  172 gctcacagaaaatcctgaggttgatacctatgac 205  Q
    |||| |||||||||||||||||||||||||||||    
T  42421214 gctcgcagaaaatcctgaggttgatacctatgac 42421181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 42217915 - 42218046
Alignment:
Q  72 gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt 171  Q
    |||||||||||||||||||||| | | ||||||||||||| |||  ||     ||  |||||||| |||||||||||||||||||||||||| ||||| |    
T  42217915 gaattacacgaattggtcataaaaagtaacggagaactaggagac-agttttgaaagttgaaaccatctcatcccttcttaggaaactgaaaaactgcat 42218013  T
Q  172 gctcacagaaaatcctgaggttgatacctatga 204  Q
    |||| ||||||||||| ||||||||||||||||    
T  42218014 gctcgcagaaaatcctaaggttgatacctatga 42218046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42421388 - 42421338
Alignment:
Q  1 agaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgag 51  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  42421388 agaccctgatcctgctatactcaaaagactctctgagaagttgcatctgag 42421338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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