View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10745_low_42 (Length: 227)
Name: NF10745_low_42
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10745_low_42 |
 | |
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| [»] chr6 (10 HSPs) |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2368898 - 2369124
Alignment:
| Q |
1 |
tttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
2368898 |
tttagatggatatgatgtaagaaaaggaacacggttaattttgaatcttagaaagattcacactgatccaaatatttggtcaaatccattggaattcaaa |
2368997 |
T |
|
| Q |
101 |
ccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
2368998 |
ccagagcggtttcttactacccataaagacgttgatgttagaggtcatcattttgagctattaccatttggaggtggtagaaggatttgccctggaatgt |
2369097 |
T |
|
| Q |
201 |
catttggccttcaaatggtgcatttaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2369098 |
catttggccttcaaatggtgcatttaa |
2369124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2363152 - 2363378
Alignment:
| Q |
1 |
tttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |
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|
| T |
2363152 |
tttaggtggatatgatgtaagaaatggaacacgattaattttgaatctttggaagattcacactgatcctaatgtttggtcagatccattagtattcaaa |
2363251 |
T |
|
| Q |
101 |
ccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgt |
200 |
Q |
| |
|
|| ||| |||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| | |
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|
| T |
2363252 |
ccggagaggtttcttacaacgcataaagatattgattttagaggtaatcattttgagctattaccatttggaggtggtagaaggatttgtcccggaatat |
2363351 |
T |
|
| Q |
201 |
catttggccttcaaatggtgcatttaa |
227 |
Q |
| |
|
|||| || ||||||||| ||||||||| |
|
|
| T |
2363352 |
cattagggcttcaaatgctgcatttaa |
2363378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 2351535 - 2351745
Alignment:
| Q |
15 |
atgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttct |
114 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||| || ||||||||||| ||||||| |
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|
| T |
2351535 |
atgttagaaaaggaactcggttaatgctaaatctttggaagattcaaactgatcctagtgtttggtcagatccattagagttcaaaccagaaaggtttct |
2351634 |
T |
|
| Q |
115 |
tactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaa |
214 |
Q |
| |
|
||| || ||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| | || || | ||| || ||||| |||||| |
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|
| T |
2351635 |
taccactcataaagttgttgatgttagaggtaatcattttgaactactaccatttggaagtggtagaaggaagtgtcctgcaatatcttttggacttcaa |
2351734 |
T |
|
| Q |
215 |
atggtgcattt |
225 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2351735 |
attgtgcattt |
2351745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 2340110 - 2340292
Alignment:
| Q |
43 |
aaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttaga |
142 |
Q |
| |
|
|||||||||||||||||| || ||||| | ||||||| |||||||||| || ||||||||||| ||||| |||| || ||||||| ||||||||||||| |
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|
| T |
2340110 |
aaatctttggaagattcaaacagatcctagtgtttggccagatccattagagttcaaaccagaaaggttttttaccactcataaagctgttgatgttaga |
2340209 |
T |
|
| Q |
143 |
ggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcattt |
225 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| | || || ||||| || ||||| ||||||||| ||||||| |
|
|
| T |
2340210 |
ggtaatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgcattt |
2340292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 2307429 - 2307611
Alignment:
| Q |
43 |
aaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttaga |
142 |
Q |
| |
|
||||||||||| |||| |||| ||||| ||| ||||| |||||||||| || ||||||||||| | |||||||| || |||||||||||||||||||| |
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|
| T |
2307429 |
aaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgttagg |
2307528 |
T |
|
| Q |
143 |
ggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcattt |
225 |
Q |
| |
|
|||| | |||||| |||||| ||||||||| |||||||||| || ||||| ||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
2307529 |
ggtagtaattttgtgctattgccatttggaagtggtagaaggatatgccctggaatatcacttggacttcaaatgctgcattt |
2307611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 14711465 - 14711303
Alignment:
| Q |
50 |
tggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatc |
149 |
Q |
| |
|
|||||||| || |||||||| | ||||||| | ||||||||||| |||||||| ||| | |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
14711465 |
tggaagatccaaactgatcctagtgtttggccggatccattggagttcaaacctgagagatttcttacaactcataaagatgttgatgttagaggtaatc |
14711366 |
T |
|
| Q |
150 |
attttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttc |
212 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||| || || || ||||| || |||| ||||| |
|
|
| T |
14711365 |
attttgagcttttaccatttggaagtggaagaaggatgtgtcctggaatatcctttgcccttc |
14711303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 2261413 - 2261229
Alignment:
| Q |
43 |
aaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttaga |
142 |
Q |
| |
|
|||||||||||| ||||| || ||||||| | ||||| |||||||||| || ||||||||||| | |||||||| || || ||| ||||||||| | |
|
|
| T |
2261413 |
aaatctttggaaaattcaaaccgatccaagtatttggccagatccattagagttcaaaccagaaagatttcttaccactcacaaaaatgttgatgccaag |
2261314 |
T |
|
| Q |
143 |
ggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcatttaa |
227 |
Q |
| |
|
||| | ||||||||| | |||||||||||| |||||||||| || || |||||||| || ||||| ||||| ||| | ||||||| |
|
|
| T |
2261313 |
ggtcaacattttgagttgttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaa |
2261229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 212
Target Start/End: Complemental strand, 14753512 - 14753374
Alignment:
| Q |
74 |
gtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggag |
173 |
Q |
| |
|
|||||| | ||||||||||| ||||| || | | | |||||||| || ||||||||||||||||||| ||| ||||||||||| | |||||||||||| |
|
|
| T |
14753512 |
gtttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaa |
14753413 |
T |
|
| Q |
174 |
gtggtagaagaatttgcccaggaatgtcatttggccttc |
212 |
Q |
| |
|
|||| ||||| ||||| || ||||| || |||||||||| |
|
|
| T |
14753412 |
gtggaagaaggatttgtcctggaatatcctttggccttc |
14753374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 2357839 - 2358063
Alignment:
| Q |
3 |
taggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaacc |
102 |
Q |
| |
|
||||||| |||||||| | ||||||||| || |||| |||||||||||||| || || || || | ||||||||||| |||||||| | || ||||| |
|
|
| T |
2357839 |
taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaaaatccaaacagaccataatgtttggtcggatccattaaagtttaaacc |
2357938 |
T |
|
| Q |
103 |
agagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtca |
202 |
Q |
| |
|
||| | ||||||| || ||||||||||||||||| |||| ||| |||||| | |||||||||||| |||||||||| ||||| || | ||| || |
|
|
| T |
2357939 |
agaaagatttcttaacacttataaagatgttgatgttcgagggtgtcactttgagttgttaccatttggaagtggtagaaggatttgtcctgaaatatct |
2358038 |
T |
|
| Q |
203 |
tttggccttcaaatggtgcatttaa |
227 |
Q |
| |
|
||||| || ||||| ||||||||| |
|
|
| T |
2358039 |
tttggactagaaatgatgcatttaa |
2358063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 2297361 - 2297470
Alignment:
| Q |
74 |
gtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggag |
173 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || |||||||||| || | |||||||||||| || | ||| | |||||||| | || ||||||||| |
|
|
| T |
2297361 |
gtttggtcagatccattagaatttaaacctgaaaggtttcttaccactaacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaa |
2297460 |
T |
|
| Q |
174 |
gtggtagaag |
183 |
Q |
| |
|
|||| ||||| |
|
|
| T |
2297461 |
gtggaagaag |
2297470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 4305850 - 4306075
Alignment:
| Q |
1 |
tttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaa |
100 |
Q |
| |
|
||||||||| |||||||| | ||||||||| | |||| | ||||| |||||||| || |||||||| || ||||||| ||| || || || |||||| |
|
|
| T |
4305850 |
tttaggtggttatgatgtcaaaaaaggaactagactaatcatgaatctatggaagatccatactgatcctaaggtttggttagaacctttagagttcaaa |
4305949 |
T |
|
| Q |
101 |
ccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgt |
200 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||||||| ||| ||||||||||| |||||||||||||| |||||||||| ||||| |||||||| | |
|
|
| T |
4305950 |
ccagaacggtttcttactactcataaaggtgttgatgttaagggtcatcattttgagttattaccatttggaagtggtagaaggatttgtccaggaatat |
4306049 |
T |
|
| Q |
201 |
catttggccttcaaatggtgcattta |
226 |
Q |
| |
|
| | |||||||||||||||||||||| |
|
|
| T |
4306050 |
cttatggccttcaaatggtgcattta |
4306075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5804416 - 5804192
Alignment:
| Q |
1 |
tttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaa |
100 |
Q |
| |
|
||||||||| ||| |||| | ||||||||| || ||||| ||||||||||||||| || || |||| | ||||||| || ||||||| || || || |
|
|
| T |
5804416 |
tttaggtggttatcatgttacaaaaggaactcgattaatcacaaatctttggaagatccaaacagatcttagtgtttggccaaatccattagattttaag |
5804317 |
T |
|
| Q |
101 |
ccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgt |
200 |
Q |
| |
|
||||| |||||||||| || ||||||||| |||||||||| |||||||||||||| ||| |||||||||| |||||||||| | || || ||||| | |
|
|
| T |
5804316 |
ccagaaaggtttcttacaactcataaagatattgatgttaggggtaatcattttgaactacaaccatttggaagtggtagaaggaaatgtcctggaatat |
5804217 |
T |
|
| Q |
201 |
catttggccttcaaatggtgcattt |
225 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
5804216 |
gttttggacttcaaatggtgcattt |
5804192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 560 - 689
Alignment:
| Q |
83 |
gatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaa |
182 |
Q |
| |
|
||||||||||| ||||| || | | | |||||||| || ||||||||||||||||||| ||| ||||||||||| | |||||||||||| |||| |||| |
|
|
| T |
560 |
gatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagtggaagaa |
659 |
T |
|
| Q |
183 |
gaatttgcccaggaatgtcatttggccttc |
212 |
Q |
| |
|
| ||||| || ||||| || |||||||||| |
|
|
| T |
660 |
ggatttgtcctggaatatcctttggccttc |
689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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