View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10745_low_6 (Length: 370)

Name: NF10745_low_6
Description: NF10745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10745_low_6
NF10745_low_6
[»] chr1 (4 HSPs)
chr1 (1-256)||(41601785-41602040)
chr1 (296-352)||(41602120-41602176)
chr1 (297-356)||(16263773-16263832)
chr1 (297-356)||(41602842-41602901)
[»] scaffold0633 (1 HSPs)
scaffold0633 (1-256)||(56-312)
[»] chr7 (5 HSPs)
chr7 (297-356)||(2946534-2946593)
chr7 (297-356)||(6483603-6483662)
chr7 (297-356)||(33141939-33141998)
chr7 (297-356)||(37998062-37998121)
chr7 (297-356)||(18520664-18520724)
[»] chr5 (1 HSPs)
chr5 (297-356)||(41196079-41196138)
[»] chr4 (4 HSPs)
chr4 (297-356)||(56395552-56395611)
chr4 (297-356)||(6230145-6230204)
chr4 (296-355)||(9471033-9471092)
chr4 (297-356)||(9470308-9470367)
[»] chr3 (1 HSPs)
chr3 (297-356)||(50035378-50035437)
[»] chr2 (4 HSPs)
chr2 (297-356)||(23988323-23988382)
chr2 (298-356)||(29100044-29100102)
chr2 (10-66)||(6848486-6848542)
chr2 (307-348)||(7355144-7355185)
[»] chr6 (1 HSPs)
chr6 (297-356)||(14799523-14799582)
[»] chr8 (1 HSPs)
chr8 (298-356)||(42189144-42189203)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 41601785 - 41602040
Alignment:
Q  1 tgcatcagacttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaatacatagcactgcaatttctagcttgtccatcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  41601785 tgcatcagacttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaatacataacactgcaatatctagcttgtctatcact 41601884  T
Q  101 ttaatcgatgaagtgtacaagaaagtgaataaacatattctttatgggagaaaataaaattagtttatctaaaaaacatatgctcgaactccatagaaag 200  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41601885 ttaaccgatgaagtgtacaagaaagtgaacaaacatattctttatgggagaaaataaaattagtttgtctaaaaaacatatgctcgaactccatagaaag 41601984  T
Q  201 tgaacaaaacaagtttgtcaaaaaagcttctcaaataactagtagttagccctaat 256  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41601985 tgaacaaaacaagtttgtcaaaaaagcttctcagataactagtagttagccctaat 41602040  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 41602120 - 41602176
Alignment:
Q  296 acaaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgctta 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41602120 acaaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgctta 41602176  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 16263773 - 16263832
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16263773 caaaataaatatgaaccattggataaaaggaaattaactttggatcaaaatgcttactat 16263832  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 41602901 - 41602842
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||   ||||| || |||||||  |||||||||||||    
T  41602901 caaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttactat 41602842  T

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Target: scaffold0633 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 312 - 56
Alignment:
Q  1 tgcatcagacttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaatacatagcactgcaatttctagcttgtccatcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  312 tgcatcagacttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaatacataacactgcaatatctagcttgtctatcact 213  T
Q  101 ttaatcgatgaagtgtacaagaaagtgaataaacatattctttatgggagaaaataaaattagtttatctaaaaaacatatgctcgaactccatagaaag 200  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  212 ttaaccgatgaagtgtacaagaaagtgaacaaacatattctttatgggagaaaataaaattagtttgtctaaaaaacatatgctcgaactccatagaaag 113  T
Q  201 tgaacaaaacaagtttgtcaaaaaag-cttctcaaataactagtagttagccctaat 256  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  112 tgaacaaaacaagtttgtcaaaaaagacttctcagataactagtagttagccctaat 56  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 2946534 - 2946593
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2946534 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 2946593  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 6483603 - 6483662
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6483603 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 6483662  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 33141939 - 33141998
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141939 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 33141998  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 37998121 - 37998062
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37998121 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 37998062  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 18520724 - 18520664
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaac-tttggatcaaaatgcttactat 356  Q
    |||||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||||||||    
T  18520724 caaaataaatatgaactatttgataaaagttaattaacttttggatcaaaatccttactat 18520664  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 41196079 - 41196138
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41196079 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 41196138  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 56395552 - 56395611
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56395552 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 56395611  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 6230145 - 6230204
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6230145 caaaataaatatgaaccattggataaaagtaaattaaatttggatcaaaatgcttactat 6230204  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 9471092 - 9471033
Alignment:
Q  296 acaaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttacta 355  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9471092 acaaaataaatatgaaccattagataaaagtaaattaactttggatcaaaatgcttacta 9471033  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 9470308 - 9470367
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||   ||||| || |||||||  |||||||||||||    
T  9470308 caaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttactat 9470367  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 50035378 - 50035437
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50035378 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 50035437  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 23988323 - 23988382
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23988323 caaaataaatatgaactattggataaaagtaaattaactttggatcaaaatgcttactat 23988382  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 29100044 - 29100102
Alignment:
Q  298 aaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29100044 aaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgtttactat 29100102  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 6848542 - 6848486
Alignment:
Q  10 cttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaat 66  Q
    ||||||||||||||||| || |||| |||||||| |||||||||  |||||||||||    
T  6848542 cttactctcttttctttgacagtaaaccttatagaaaatattaccaaatgttgcaat 6848486  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 7355144 - 7355185
Alignment:
Q  307 atgaaccattggataaaagtaaattaactttggatcaaaatg 348  Q
    |||||||||| |||||| || |||||||||||||||||||||    
T  7355144 atgaaccattagataaaggttaattaactttggatcaaaatg 7355185  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 14799523 - 14799582
Alignment:
Q  297 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactat 356  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  14799523 caaaataaatatgaaccattgaataaaagtaaattaactttggatcaaaattcttactat 14799582  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 42189144 - 42189203
Alignment:
Q  298 aaaataaatatgaaccattggataaaagtaaattaac-tttggatcaaaatgcttactat 356  Q
    ||||| |||| ||||||||||||||| || ||||||| |||| |||||||||||||||||    
T  42189144 aaaatgaatacgaaccattggataaaggttaattaacttttgaatcaaaatgcttactat 42189203  T

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