View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10746_high_5 (Length: 240)
Name: NF10746_high_5
Description: NF10746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10746_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 39849623 - 39849400
Alignment:
| Q |
17 |
atgcatgtcttaagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaacaaagatgaatgtgc |
116 |
Q |
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| T |
39849623 |
atgcatgtcttaagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaacaaagatgaatgtgc |
39849524 |
T |
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| Q |
117 |
atcacaatcagattcagcaggagtagagaggaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagacta |
216 |
Q |
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| T |
39849523 |
atcacaatcagattcagcaggagtagagaggaaagtaaatattcaatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagacta |
39849424 |
T |
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| Q |
217 |
gtaactcaatcacatatgatacat |
240 |
Q |
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| T |
39849423 |
gtaactcaatcacatatgatacat |
39849400 |
T |
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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 33973168 - 33973356
Alignment:
| Q |
27 |
taagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaaca--aagatgaatgtgcatcacaat |
124 |
Q |
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| T |
33973168 |
taagaatcttgaatgaatgtgaagaagctgatccaaatgccatagca-tgctcagtttatccatcattcctacaggtggagaataaatgtgcattacaat |
33973266 |
T |
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| Q |
125 |
cagattcagcaggagtagagaggaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagac |
214 |
Q |
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| T |
33973267 |
tagggacatcaggagtagagaggaaagtaaatacttgatgtattgaatttgatgaacacataaaccaatcgtaagtagtctactgaagac |
33973356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 32202033 - 32201953
Alignment:
| Q |
28 |
aagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaacaaagat |
108 |
Q |
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| T |
32202033 |
aagaatcttgaatgaatgtgaagaagctaatccaaataccatagcgatgcttattttagccatcattcctacaacaaagat |
32201953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 3981494 - 3981428
Alignment:
| Q |
147 |
gaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaaga |
213 |
Q |
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| T |
3981494 |
gaaagtaaatattagatgcattgcatatggttaacaaataaaccaaccataagtagtctactgaaga |
3981428 |
T |
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