View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10746_low_1 (Length: 416)

Name: NF10746_low_1
Description: NF10746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10746_low_1
NF10746_low_1
[»] chr8 (1 HSPs)
chr8 (19-384)||(30054938-30055290)
[»] chr3 (10 HSPs)
chr3 (289-384)||(8400489-8400584)
chr3 (270-385)||(5367622-5367737)
chr3 (270-380)||(5362411-5362521)
chr3 (276-380)||(5374181-5374285)
chr3 (37-92)||(8400207-8400262)
chr3 (270-380)||(5355979-5356089)
chr3 (38-92)||(5368748-5368802)
chr3 (38-92)||(5374505-5374559)
chr3 (37-83)||(5367951-5367997)
chr3 (37-83)||(5362735-5362781)
[»] chr7 (1 HSPs)
chr7 (45-89)||(30597955-30597999)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 30054938 - 30055290
Alignment:
Q  19 aaatactccaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaattcgtaatacctggacactatgtgaa 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |         |||  | | ||        
T  30054938 aaatactacaatacgaacgtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagt---------tggtgaatttg---- 30055024  T
Q  119 acagcgtattctacgatactattcagtattcggggttccacggaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatcatcgcgaagag 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30055025 acagcgtattctacgatactattcagtattcggggttccacgaaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatcatcgcgaagag 30055124  T
Q  219 acaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgagatagttccatct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30055125 acaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgagatagttccatct 30055224  T
Q  319 tgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30055225 tgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat 30055290  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 289 - 384
Target Start/End: Original strand, 8400489 - 8400584
Alignment:
Q  289 tggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat 384  Q
    ||||||||| |||||||||| | ||||||||||||||||||  |||||||||||| ||||||| || |||||||| |||||||||| |||||||||    
T  8400489 tggaagatgttttgtgagatggatccatcttgttgagagtacacaagtttgaaaaacttctttggttttcaagaaggagagaatgtgatggataat 8400584  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 385
Target Start/End: Complemental strand, 5367737 - 5367622
Alignment:
Q  270 tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag 369  Q
    ||||| |||||||||||||||| ||||| |||| |||||  |||||||| || ||||||||| ||||||||||||||| ||| ||||  || || |||||    
T  5367737 tggaacttaatctaagggttggtagatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag 5367638  T
Q  370 aatgtcatggataatc 385  Q
    ||||| ||||| ||||    
T  5367637 aatgtgatggagaatc 5367622  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 380
Target Start/End: Complemental strand, 5362521 - 5362411
Alignment:
Q  270 tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag 369  Q
    ||||| |||||||||| ||||||| ||| ||||  ||||  ||||||| | | ||||||||||||||||||||||||||||| |||| ||| || |||||    
T  5362521 tggaacttaatctaagagttggaatatggtttggtagattcttccatcgtttggagagtatgcaagtttgaaaagcttctttggtgtccaataaggagag 5362422  T
Q  370 aatgtcatgga 380  Q
    ||||| |||||    
T  5362421 aatgtgatgga 5362411  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 380
Target Start/End: Complemental strand, 5374285 - 5374181
Alignment:
Q  276 ttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtc 375  Q
    |||||||||||||||||| ||| |||| |||||  |||||||| || ||||||||| ||||||||||||||| ||| ||||  || || ||||||||||     
T  5374285 ttaatctaagggttggaatatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtg 5374186  T
Q  376 atgga 380  Q
    |||||    
T  5374185 atgga 5374181  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 8400207 - 8400262
Alignment:
Q  37 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaa 92  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  8400207 gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaa 8400262  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 380
Target Start/End: Complemental strand, 5356089 - 5355979
Alignment:
Q  270 tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag 369  Q
    ||||| |||||||||||||||  ||||| |||| |||||  |||||||| || ||||||||| ||||||||||||||| ||| ||||  || || |||||    
T  5356089 tggaacttaatctaagggttgagagatgttttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag 5355990  T
Q  370 aatgtcatgga 380  Q
    ||||| |||||    
T  5355989 aatgtgatgga 5355979  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 5368802 - 5368748
Alignment:
Q  38 tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaa 92  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  5368802 tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaa 5368748  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 5374559 - 5374505
Alignment:
Q  38 tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaa 92  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  5374559 tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaa 5374505  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 5367997 - 5367951
Alignment:
Q  37 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagc 83  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||    
T  5367997 gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagc 5367951  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 5362781 - 5362735
Alignment:
Q  37 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagc 83  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||    
T  5362781 gtgaatggaaaggtcaagagacgttaaggtttgagatgaaaataagc 5362735  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 30597955 - 30597999
Alignment:
Q  45 aaaggtcaagagaagttaaagtttgagatgaaaataagcaagatg 89  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||||    
T  30597955 aaaggtcaagagaggttaaagtgtgacatgaaaaaaagcaagatg 30597999  T

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