View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10746_low_9 (Length: 219)
Name: NF10746_low_9
Description: NF10746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10746_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 8528475 - 8528667
Alignment:
| Q |
14 |
aagaactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgtt |
110 |
Q |
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| T |
8528475 |
aagaactaaaaatataacaaatatatacaacatcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgtt |
8528574 |
T |
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| Q |
111 |
gtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacat |
203 |
Q |
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| T |
8528575 |
gtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacat |
8528667 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 8535045 - 8535122
Alignment:
| Q |
17 |
aactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaac |
91 |
Q |
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| T |
8535045 |
aactaaatttataacaaatataaacaacttcataaatatattagttgtaaaagcaaatgattgacgaaacatcacaac |
8535122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 9442625 - 9442828
Alignment:
| Q |
14 |
aagaactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctc-----------c |
99 |
Q |
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| T |
9442625 |
aagaactaaaaatataacaaatatatacaacatcataaatatattagctgcgaaagcaaatgattgacgaaacatcacaacctttctccaacatgtctcc |
9442724 |
T |
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| Q |
100 |
aacatgtcgttgtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgta |
199 |
Q |
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| T |
9442725 |
aacatgtcgttgtgagaatatatcaaccgaagtaacctaacaacatgttttcttttctccaaatggaatggcaaaatagtaagtttaaaatataagtgta |
9442824 |
T |
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| Q |
200 |
acat |
203 |
Q |
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|||| |
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| T |
9442825 |
acat |
9442828 |
T |
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