View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10747_high_1 (Length: 428)

Name: NF10747_high_1
Description: NF10747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10747_high_1
NF10747_high_1
[»] chr6 (1 HSPs)
chr6 (13-428)||(6682246-6682660)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Original strand, 6682246 - 6682660
Alignment:
Q  13 atcaaaatcaaacaaacaaattaacagtttggtgctggtacttttaccactttggctctcagattcactattttgtccgggacatgagaaatctgagcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  6682246 atcaaaatcaaacaaacaaattaacagtttggtgctggtacttttaccactttggctctcagcctcactattttgtccgggacatgagaaatctgagcaa 6682345  T
Q  113 atcttctcctgtaaagcactcgcagttgcattgttctgagagtggacaatcccatatttttagttcgaccaagttattaaggcgagatattcctcatggc 212  Q
    |||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  6682346 atcttctcctgtaaagcacttgcagttgcattgtcctaagagtggacaatcccatttttttagttcgaccaagttattaaggcgagatattcctcgtggc 6682445  T
Q  213 aacgacttcaaataatggcatccaactatctctatacg-tttaagtgatagtaggtcaaatatcttatcaggcaaaatagttgagttaccaagagatatt 311  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6682446 aacgacttcaaataatggcatccaactatctctatacgttttaagtgatagtaggtcaaatatcttatcaggcaaaatagttgagttaccaagagatatc 6682545  T
Q  312 atgannnnnnncaaagaaggaaagcagtcaaaccaaaactccaacttatccacatttacaagtttaagatactcaagagaagtaaggttttgctgaaaca 411  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||| ||||||||||||||    
T  6682546 atgatttttttcaaagaaggaaagcagtcaaaccaaaactccaacttatccacatttacaagtttaagattctc--gagaagtaaagttttgctgaaaca 6682643  T
Q  412 gagatggcaaagaatcg 428  Q
     ||||||||||||||||    
T  6682644 tagatggcaaagaatcg 6682660  T

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