View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10747_low_5 (Length: 246)
Name: NF10747_low_5
Description: NF10747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10747_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 55156572 - 55156653
Alignment:
| Q |
15 |
aaggaccggaattaaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcattgatacaat |
96 |
Q |
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| T |
55156572 |
aaggaccggaattaaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcattgatacaat |
55156653 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 54573308 - 54573386
Alignment:
| Q |
18 |
gaccggaattaaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcattgatacaat |
96 |
Q |
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| T |
54573308 |
gaccggaattgaagtgtatgtacttgttttaaccaatcaagttactataatattttgttgtgtatttcattgatacaat |
54573386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 55156740 - 55156799
Alignment:
| Q |
183 |
gatagtgtgtgaaattctggtatttttagtttctatgcataagagaatatgtttcatctc |
242 |
Q |
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| T |
55156740 |
gatagtgtgtgaaattctggtatttttagtttctatgcataagagaatatgtttcatctc |
55156799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 54573461 - 54573520
Alignment:
| Q |
183 |
gatagtgtgtgaaattctggtatttttagtttctatgcataagagaatatgtttcatctc |
242 |
Q |
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| T |
54573461 |
gatagtgtgtgaaattctgatatttttagtgtctatgcataagagaatatgtttcatctc |
54573520 |
T |
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