View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10747_low_6 (Length: 241)

Name: NF10747_low_6
Description: NF10747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10747_low_6
NF10747_low_6
[»] chr4 (13 HSPs)
chr4 (112-229)||(46550706-46550823)
chr4 (122-229)||(17056615-17056722)
chr4 (115-229)||(47541809-47541925)
chr4 (122-229)||(41464802-41464911)
chr4 (18-72)||(46550815-46550869)
chr4 (122-229)||(52920087-52920197)
chr4 (127-222)||(15827131-15827229)
chr4 (131-229)||(47833504-47833603)
chr4 (121-229)||(36364868-36364972)
chr4 (122-229)||(39503504-39503615)
chr4 (122-229)||(20679841-20679951)
chr4 (134-219)||(46381481-46381568)
chr4 (157-229)||(42969971-42970043)
[»] chr1 (10 HSPs)
chr1 (122-229)||(16253029-16253136)
chr1 (122-229)||(24241478-24241585)
chr1 (122-229)||(41942781-41942888)
chr1 (122-229)||(21356794-21356901)
chr1 (122-229)||(34773420-34773528)
chr1 (122-229)||(39744169-39744276)
chr1 (116-220)||(38746028-38746133)
chr1 (122-229)||(2344969-2345077)
chr1 (122-200)||(48503922-48504000)
chr1 (122-224)||(7101359-7101464)
[»] chr3 (9 HSPs)
chr3 (122-229)||(44880254-44880361)
chr3 (118-229)||(1994850-1994961)
chr3 (122-229)||(22220210-22220318)
chr3 (123-229)||(2008400-2008508)
chr3 (117-229)||(22831174-22831286)
chr3 (122-229)||(39056875-39056981)
chr3 (122-198)||(26466362-26466438)
chr3 (142-229)||(28297695-28297782)
chr3 (122-179)||(45805583-45805640)
[»] chr7 (8 HSPs)
chr7 (118-229)||(8541427-8541539)
chr7 (122-229)||(34998528-34998637)
chr7 (122-229)||(10544991-10545100)
chr7 (122-201)||(39187986-39188065)
chr7 (122-229)||(45627414-45627524)
chr7 (127-179)||(32676800-32676852)
chr7 (112-168)||(15878797-15878853)
chr7 (170-229)||(40076693-40076753)
[»] chr8 (11 HSPs)
chr8 (118-229)||(42056676-42056787)
chr8 (110-229)||(30208187-30208307)
chr8 (118-217)||(39402038-39402140)
chr8 (117-229)||(5594779-5594891)
chr8 (123-229)||(1162117-1162222)
chr8 (122-229)||(40719895-40720005)
chr8 (117-229)||(35179155-35179268)
chr8 (119-229)||(31333162-31333273)
chr8 (140-229)||(42921385-42921474)
chr8 (166-229)||(30362018-30362082)
chr8 (122-222)||(36132676-36132776)
[»] chr5 (12 HSPs)
chr5 (122-229)||(33758794-33758901)
chr5 (141-223)||(23151436-23151518)
chr5 (117-229)||(2976446-2976556)
chr5 (131-229)||(34849451-34849550)
chr5 (132-229)||(30319817-30319915)
chr5 (122-229)||(20524604-20524711)
chr5 (122-229)||(10719746-10719854)
chr5 (142-229)||(37872201-37872291)
chr5 (119-159)||(37872302-37872342)
chr5 (115-227)||(8026460-8026577)
chr5 (130-229)||(3454259-3454358)
chr5 (171-229)||(42285218-42285277)
[»] chr2 (10 HSPs)
chr2 (122-229)||(3870024-3870135)
chr2 (122-229)||(11028779-11028887)
chr2 (122-215)||(36400857-36400952)
chr2 (116-229)||(28734070-28734183)
chr2 (122-229)||(37721449-37721557)
chr2 (122-229)||(38879517-38879625)
chr2 (122-229)||(3647418-3647526)
chr2 (123-229)||(30706149-30706258)
chr2 (122-229)||(6512079-6512191)
chr2 (168-229)||(3949317-3949378)
[»] scaffold0095 (1 HSPs)
scaffold0095 (118-217)||(35362-35464)
[»] chr6 (3 HSPs)
chr6 (122-229)||(2141240-2141348)
chr6 (117-229)||(7080148-7080262)
chr6 (122-216)||(25336928-25337023)
[»] scaffold0288 (1 HSPs)
scaffold0288 (122-201)||(18084-18163)
[»] scaffold0009 (1 HSPs)
scaffold0009 (114-201)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (122-229)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 46550823 - 46550706
Alignment:
Q  112 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatc 211  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46550823 aataatgaaatattcttccatggtcacaagaccaaatcaataatgtttaaacacatacataaaaagattctcctctaaatattcaatcatcatttttatc 46550724  T
Q  212 aatttcctctttattatt 229  Q
    ||||| ||||||||||||    
T  46550723 aattttctctttattatt 46550706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 17056615 - 17056722
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata-aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 220  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||  ||||||| ||||||  |||||||||||||||||    
T  17056615 tattcttccatggtcacaagaccaaatcaatagtgtttgaatacacacatataaaaaattgtccttaaaatatttaatcat-ttttttatcaatttcctc 17056713  T
Q  221 tttattatt 229  Q
    |||||||||    
T  17056714 tttattatt 17056722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 47541925 - 47541809
Alignment:
Q  115 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatca 212  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||| | |||||||  |||||||||| ||||| ||||||||||||||| |||||||||    
T  47541925 aaggagatattctttcatgatcacaagatcaaatcaataatatttggacacacacacataaaaagattttcctcaaaatattcaatcatcttttttatca 47541826  T
Q  213 atttcctctttattatt 229  Q
    |||||||  ||||||||    
T  47541825 atttccttcttattatt 47541809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 41464911 - 41464802
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 219  Q
    ||||||| ||||||||||||| ||||||||||||  || ||  ||||||||||||||||||||| || ||||| ||||||||| |||||||||||||| |    
T  41464911 tattctttcatggtcacaagatcaaatcaataatacttaaacatacacacataaaaagattctcttcaaaatactcaatcatcttttttatcaatttctt 41464812  T
Q  220 ctttattatt 229  Q
    ||||||||||    
T  41464811 ctttattatt 41464802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 46550869 - 46550815
Alignment:
Q  18 atttacgacccttttgtaggataaaactaatatggtattagtgtttaataatgaa 72  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46550869 atttacaacccttttgtaggataaaactaatatggtattagtgtttaataatgaa 46550815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 52920197 - 52920087
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcattttt-atcaatttcc 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | |  ||||||||||  | |  ||||||||||||||  ||||| |||||||| |    
T  52920197 tattcttccatggtcacaagaccaaatcaataatgtttaaatacatataaataaaaagatttacttaaaaatattcaatcatttttttttatcaattttc 52920098  T
Q  219 tctttattatt 229  Q
    |||||||||||    
T  52920097 tctttattatt 52920087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 15827229 - 15827131
Alignment:
Q  127 ttccatggtcacaagaccaaatcaataatgtttgaataca--cacataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctt 222  Q
    |||||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||  || ||||||||||| ||  ||||| |||||||| |||||    
T  15827229 ttccatggtcacaagaccgaatcaataatatttgaatacacacacataaaaagattcttgtcaaaatattcaattattttttttcatcaattttctctt 15827131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 47833504 - 47833603
Alignment:
Q  131 atggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattat 228  Q
    |||||| |||||||||||| ||| || ||| |  ||||||||||||||||   ||||| |||||||||||||| | ||||||||||||||||||||||||    
T  47833504 atggtcgcaagaccaaatctatagtggttggacatacacacataaaaagaccatcctcaaaatattcaatcatta-ttttatcaatttcctctttattat 47833602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 36364972 - 36364868
Alignment:
Q  121 atattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 220  Q
    ||||| || ||||||| ||||||||||||||||||||||| | ||||| ||||||| ||  ||||  ||||||    |||| |||||||||||||| |||    
T  36364972 atattgttgcatggtcgcaagaccaaatcaataatgtttggacacacatataaaaatatggtccttaaaatat----tcattatttttatcaattttctc 36364877  T
Q  221 tttattatt 229  Q
    |||| ||||    
T  36364876 tttactatt 36364868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 39503615 - 39503504
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaa--tcatcatttttatcaatttc 217  Q
    |||||||| ||||||||||||| ||||||||| |||||||| ||  ||||||||||||||  || |  ||||||| ||  |  |  ||||||||||||||    
T  39503615 tattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataaaaagatgatctttaaaatatttaatttttttttttttatcaatttc 39503516  T
Q  218 ctctttattatt 229  Q
    ||||||||||||    
T  39503515 ctctttattatt 39503504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 20679951 - 20679841
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata---aaaagattctcctctaaatattcaatcatcatttttatcaatttcc 218  Q
    ||||||| ||||||| ||||| |||||||||| |||||| | ||||||| |   |||| ||  || |  ||||||||||| ||  |||||||||||||||    
T  20679951 tattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacataaaaaaaatggtctttaaaatattcaattattttttttatcaatttcc 20679852  T
Q  219 tctttattatt 229  Q
    |||||||||||    
T  20679851 tctttattatt 20679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 46381481 - 46381568
Alignment:
Q  134 gtcacaagaccaaatcaataatgtttgaatacaca--cataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 219  Q
    ||||||||||||||| |||| |||||||  |||||  |||||| ||||| ||||  ||| ||||||||||  ||||||||||||||||    
T  46381481 gtcacaagaccaaataaatagtgtttgagcacacatacataaagagattatcctaaaaacattcaatcattttttttatcaatttcct 46381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 42969971 - 42970043
Alignment:
Q  157 tttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 229  Q
    |||||| ||||  ||||||||||| ||||  |||||||||||| |  |||||||||||||  |||||||||||    
T  42969971 tttgaacacacgtataaaaagattatccttaaaatattcaatctttttttttatcaattttatctttattatt 42970043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 16253029 - 16253136
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  16253029 tattcttccatgttcacaagaccaaatcaataatgtttggagacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 16253128  T
Q  222 ttattatt 229  Q
    ||||||||    
T  16253129 ttattatt 16253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 24241478 - 24241585
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  24241478 tattcttccatggtcacatgaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 24241577  T
Q  222 ttattatt 229  Q
    ||||||||    
T  24241578 ttattatt 24241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 41942781 - 41942888
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||     
T  41942781 tattctttcatggtcacaagaccaaatcaataatgtttggacacatacataaaaagattctcttcgaaatattcaatcatcatttttatcaatttcctcc 41942880  T
Q  222 ttattatt 229  Q
    ||||||||    
T  41942881 ttattatt 41942888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 21356794 - 21356901
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||| ||||||||||||| |||     
T  21356794 tattcttttatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattctcttcaaaatattcaatcatcttttttatcaattttctca 21356893  T
Q  222 ttattatt 229  Q
    ||||||||    
T  21356894 ttattatt 21356901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 34773528 - 34773420
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 219  Q
    |||||||||||| |||||||||||| ||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  34773528 tattcttccatgatcacaagaccaactcaataatgtttgcacatacacacataaaaagattctcctcaaaatattcaatcatattttttattaatttcct 34773429  T
Q  220 ctttattatt 229  Q
     |||||||||    
T  34773428 -tttattatt 34773420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 39744276 - 39744169
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||  |||| ||||||||  ||||||||| |||||||     
T  39744276 tattcttctatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattcttctcagaatagtcaatcattttttttatcattttcctcc 39744177  T
Q  222 ttattatt 229  Q
    ||||||||    
T  39744176 ttattatt 39744169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 38746133 - 38746028
Alignment:
Q  116 aggagatattcttccatggtcacaagaccaaatcaataatgtttga-atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaat 214  Q
    |||||| |||||||||| |||||||||||||||||||||| || || | |||| |||||| ||||||||||| ||||||||||||||| || || |||||    
T  38746133 aggagacattcttccatcgtcacaagaccaaatcaataattttggacacacacccataaatagattctcctcaaaatattcaatcatctttgttttcaat 38746034  T
Q  215 ttcctc 220  Q
    ||||||    
T  38746033 ttcctc 38746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 2344969 - 2345077
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 219  Q
    ||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| ||| || |  ||| ||||||||||| ||||||||||||||||    
T  2344969 tattcttccttggtcacaagaccaaatcaataatgtttggataagcacacataaaaa-attttctttaaaaaattcaatcatcttttttatcaatttcct 2345067  T
Q  220 ctttattatt 229  Q
    | || |||||    
T  2345068 ccttcttatt 2345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 48503922 - 48504000
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca 200  Q
    |||||||||||| ||| ||||||||||||||||| |||| | ||||| |||||| ||||||| || ||||| |||||||    
T  48503922 tattcttccatgttcataagaccaaatcaataatatttggacacacatataaaaggattctcatcaaaatactcaatca 48504000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 7101464 - 7101359
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttga----atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 217  Q
    |||||| ||||| ||| ||||||||||||||| |||| ||    | ||||||||||||||||  ||||  ||||||||||||||   |||||||||||||    
T  7101464 tattctcccatgatcataagaccaaatcaatagtgttggaacatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 7101366  T
Q  218 ctcttta 224  Q
    |||||||    
T  7101365 ctcttta 7101359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 44880254 - 44880361
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||     
T  44880254 tattctttcatggtcacaagaccaaatcaataatgtttgaacacacacataaaacgattctcctcaaaatattcagtcatcttttttatcaatttcctcc 44880353  T
Q  222 ttattatt 229  Q
    ||||||||    
T  44880354 ttattatt 44880361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 1994961 - 1994850
Alignment:
Q  118 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 217  Q
    |||||||||| | |||||||||||||||||||||||||||||| | | ||||| ||||||||||||||  ||||||||||||||| |||||||||||| |    
T  1994961 gagatattctactatggtcacaagaccaaatcaataatgtttggacaaacacacaaaaagattctcctgaaaatattcaatcatcttttttatcaattac 1994862  T
Q  218 ctctttattatt 229  Q
    ||||||||||||    
T  1994861 ctctttattatt 1994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 22220210 - 22220318
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 220  Q
    |||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||  |||||||||||||||||    
T  22220210 tattcttccatggtcaaaagatcaaatcaataatgtttgtacacacacataaaaagattcttctcaaaatattcaatcatctttttttatcaatttcctc 22220309  T
Q  221 tttattatt 229  Q
     ||||||||    
T  22220310 cttattatt 22220318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 2008400 - 2008508
Alignment:
Q  123 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 220  Q
    ||||||||||| ||||||||||||||||||||| |||| | |||||||||  |||||||||||||| ||||||||||||||| ||||||||||||| |||    
T  2008400 attcttccatgatcacaagaccaaatcaataatatttggacacacacatataaaaagattctcctcaaaatattcaatcatcttttttatcaattttctc 2008499  T
Q  221 tttattatt 229  Q
     ||||||||    
T  2008500 cttattatt 2008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 22831286 - 22831174
Alignment:
Q  117 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 216  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  22831286 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 22831187  T
Q  217 cctctttattatt 229  Q
    |||| ||||||||    
T  22831186 cctccttattatt 22831174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 39056981 - 39056875
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    |||||||||||| || |||||||||||| |||||||||| | ||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| |||     
T  39056981 tattcttccatgatcgcaagaccaaatctataatgtttggacacacacataaaaagattttcctcaaaatattcaatcatc-tttttatcgattttctcc 39056883  T
Q  222 ttattatt 229  Q
    ||| ||||    
T  39056882 ttaatatt 39056875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 26466438 - 26466362
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaat 198  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||| | |||||||||||||  |  |||||||||||    
T  26466438 tattcttccatggtcacaagatcaaattaataatgtttgaacacatatataaaaagattctttttaaaatattcaat 26466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 28297695 - 28297782
Alignment:
Q  142 accaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 229  Q
    ||||||||||||| ||||| | | | | ||||||||||||||||  | |||||| |||||   |||||||||||||||||||||||||    
T  28297695 accaaatcaataaagtttggacatatatataaaaagattctccttaacatattcgatcatttcttttatcaatttcctctttattatt 28297782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 45805640 - 45805583
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 179  Q
    |||||||||||| | |||||| |||||||||| |||||| | ||||||||||||||||    
T  45805640 tattcttccatgattacaagatcaaatcaatagtgtttgcacacacacataaaaagat 45805583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 8541427 - 8541539
Alignment:
Q  118 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatca-tttttatcaattt 216  Q
    |||||||||||  |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | |||||||||||||    
T  8541427 gagatattcttttatggtcacaagaccaaatcaataatgtttgaacacacacgtaaaaagattctcctcaaaatattcaatcattattttttatcaattt 8541526  T
Q  217 cctctttattatt 229  Q
    |||| ||||||||    
T  8541527 cctccttattatt 8541539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 34998528 - 34998637
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcct 219  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||||||||||| |||||||||||||| |||||||||||||| ||    
T  34998528 tattcttccatggtcacaagaccaaatcaataatgtttggacacacacatataaaaagattctcctcaaaatattcaatcattatttttatcaattttct 34998627  T
Q  220 ctttattatt 229  Q
    | ||||||||    
T  34998628 ccttattatt 34998637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 10544991 - 10545100
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatt--tttatcaatttcct 219  Q
    |||||||||| | |||||||||| |||||||| | |||| | ||||||||||||||||| |  |  ||||||||||||||  ||  ||||||||||||||    
T  10544991 tattcttccacgatcacaagaccgaatcaatagtatttggagacacacataaaaagattatttttaaaatattcaatcattttttatttatcaatttcct 10545090  T
Q  220 ctttattatt 229  Q
    ||||||||||    
T  10545091 ctttattatt 10545100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 39188065 - 39187986
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 201  Q
    |||||||||||||||| ||||||||||||||| | |||| | |||| |||||||||||  ||||  ||||||||||||||    
T  39188065 tattcttccatggtcagaagaccaaatcaatagtatttggacacacgcataaaaagatggtccttaaaatattcaatcat 39187986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 45627524 - 45627414
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatg-tttga-atacacacat-aaaaagattctcctctaaatattcaatcatcatttttatcaatttcc 218  Q
    |||||||||||||||||| ||||||||||||| || ||||| | |||||||| ||||| ||| ||||  ||||||| ||||||  |||||||||||||||    
T  45627524 tattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacataaaaaaaattgtccttaaaatatttaatcattttttttatcaatttcc 45627425  T
Q  219 tctttattatt 229  Q
    | | |||||||    
T  45627424 tttatattatt 45627414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 32676800 - 32676852
Alignment:
Q  127 ttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 179  Q
    ||||||||||||||||||||||||||| |||||| |||||||  |||||||||    
T  32676800 ttccatggtcacaagaccaaatcaatagtgtttggatacacatgtaaaaagat 32676852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 15878853 - 15878797
Alignment:
Q  112 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacaca 168  Q
    ||||| |||||||||||| || ||||||||||||||||||||  ||||| |||||||    
T  15878853 aataaagagatattcttctattgtcacaagaccaaatcaatagcgtttggatacaca 15878797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 40076753 - 40076693
Alignment:
Q  170 ataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctttattatt 229  Q
    |||||||||||||  |  ||||||||||||||| ||||| |||||||||||| ||||||||    
T  40076753 ataaaaagattcttttaaaaatattcaatcatctttttttatcaatttcctccttattatt 40076693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 42056676 - 42056787
Alignment:
Q  118 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |  ||||||||||||||| |||||||||||||     
T  42056676 gagatattcttccatggtcacaagaccaaatcaataatgtttggacacaaacataaaaagattctctttaaaatattcaatcatcttttttatcaatttt 42056775  T
Q  218 ctctttattatt 229  Q
    ||| ||||||||    
T  42056776 ctccttattatt 42056787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 30208187 - 30208307
Alignment:
Q  110 agaataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttt 207  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||| | ||  | ||||||||||||||||||| ||||||||||||||| ||||    
T  30208187 agaatatggaggtattcttccatggtcataagaccaaatcaataatgtttggacacatatacataaaaagattctcctc-aaatattcaatcatcttttt 30208285  T
Q  208 tatcaatttcctctttattatt 229  Q
    ||||||||||||| ||||||||    
T  30208286 tatcaatttcctccttattatt 30208307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 39402140 - 39402038
Alignment:
Q  118 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  39402140 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 39402041  T
Q  215 ttc 217  Q
    |||    
T  39402040 ttc 39402038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 5594779 - 5594891
Alignment:
Q  117 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 216  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  5594779 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 5594878  T
Q  217 cctctttattatt 229  Q
    |||| ||||||||    
T  5594879 cctccttattatt 5594891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 1162222 - 1162117
Alignment:
Q  123 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctt 222  Q
    |||| |||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||||||||  || || ||||||||||||||||    
T  1162222 attcgtccatgatcacaagaccaaatcagtaatatttgaacacacacataaaaggattctcctcaaaatattcaat-gtctttcttatcaatttcctctt 1162124  T
Q  223 tattatt 229  Q
    |||||||    
T  1162123 tattatt 1162117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 40720005 - 40719895
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcc 218  Q
    |||||||||||||||| ||||  |||| ||||||||||| | |||||||  |||||||||||||||| |||||||||||||||  |||||||||||||||    
T  40720005 tattcttccatggtcaaaagattaaattaataatgtttggacacacacacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttcc 40719906  T
Q  219 tctttattatt 229  Q
    || ||||||||    
T  40719905 tccttattatt 40719895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 35179155 - 35179268
Alignment:
Q  117 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatt 215  Q
    |||| ||||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||||| ||| ||||||||||| | |  ||||||||||||    
T  35179155 ggaggtattctttcatggtcataagaccaaatcaataatgtttggacacacatataaaaagattcttctcaaaatattcaataatttttttttatcaatt 35179254  T
Q  216 tcctctttattatt 229  Q
    ||||  ||||||||    
T  35179255 tccttcttattatt 35179268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 31333273 - 31333162
Alignment:
Q  119 agatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatcaattt 216  Q
    |||||||||||||| |||||||||||||||||| ||||||||  ||||||||  |||||||||| | ||  ||||||||||||||| ||||||||| |||    
T  31333273 agatattcttccatagtcacaagaccaaatcaa-aatgtttggttacacacacataaaaagattttacttaaaatattcaatcatcttttttatcagttt 31333175  T
Q  217 cctctttattatt 229  Q
     ||| ||||||||    
T  31333174 tctccttattatt 31333162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 42921385 - 42921474
Alignment:
Q  140 agaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 229  Q
    ||||||||| ||||||||||||| ||| | ||||||||||||| ||| ||||| ||||||||| |||||||||||||| || ||||||||    
T  42921385 agaccaaattaataatgtttgaacacaaatataaaaagattcttctcaaaataatcaatcatcttttttatcaatttcatccttattatt 42921474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 30362082 - 30362018
Alignment:
Q  166 acacataaaaagattctcctctaaatattcaatcatca-tttttatcaatttcctctttattatt 229  Q
    ||||||||||| ||||||||| ||||||||||| || | |||||||||||||| || ||||||||    
T  30362082 acacataaaaaaattctcctcaaaatattcaattattattttttatcaatttcgtccttattatt 30362018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 36132676 - 36132776
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    |||||||| || |||||||||| |||| |||| | |||| ||||||||||||||||||  |  |  ||||||| ||||||  ||||||| ||||||||||    
T  36132676 tattcttctatagtcacaagactaaattaatagtatttggatacacacataaaaagatggtttttaaaatatttaatcattttttttattaatttcctct 36132775  T
Q  222 t 222  Q
    |    
T  36132776 t 36132776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 33758794 - 33758901
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    ||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |    
T  33758794 tattcttccatggtcacaagatcaaatcaatactgtttggacacacacataaaaagattctcctcaaactattcaatcatcttttttatcaatttccttt 33758893  T
Q  222 ttattatt 229  Q
    ||||||||    
T  33758894 ttattatt 33758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 23151518 - 23151436
Alignment:
Q  141 gaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctcttt 223  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  23151518 gaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcatttttatcaatttcttcttt 23151436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 2976556 - 2976446
Alignment:
Q  117 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 216  Q
    |||| |||||||||||||||| ||||||||||||||| |||||| |  |||||||||||||||  ||||  ||||||||||||||  |||||||||||||    
T  2976556 ggaggtattcttccatggtcataagaccaaatcaatagtgtttgga--cacacataaaaagatggtccttaaaatattcaatcattttttttatcaattt 2976459  T
Q  217 cctctttattatt 229  Q
    | |||||| ||||    
T  2976458 cttctttaatatt 2976446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 34849451 - 34849550
Alignment:
Q  131 atggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 229  Q
    ||||||| ||||| |||||||||||||||  | ||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| ||| ||||||||    
T  34849451 atggtcataagacgaaatcaataatgtttcgacacacatataaaaagattctcctcaaaatattcaatcatctttttttatcaattttctccttattatt 34849550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 30319817 - 30319915
Alignment:
Q  132 tggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 229  Q
    ||||||||||||||||||||||||||||| |||  | |||||||||| |||||| |  ||||||||||||||| ||||||||||||||||| || |||||    
T  30319817 tggtcacaagaccaaatcaataatgtttggatacgcgcacataaaaa-attctctttaaaatattcaatcatcttttttatcaatttcctccttcttatt 30319915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 20524711 - 20524604
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 221  Q
    |||||||||||| |||||| || ||||||||| |||||| | |||||||| |||||||  |  |  ||||||||||||||  ||||||||||||||||||    
T  20524711 tattcttccatgatcacaaaactaaatcaatactgtttggacacacacatcaaaagatgatgtttaaaatattcaatcattttttttatcaatttcctct 20524612  T
Q  222 ttattatt 229  Q
    ||||||||    
T  20524611 ttattatt 20524604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 10719746 - 10719854
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 220  Q
    |||||||||||||||| |||||||||| |||| |||||| | ||||||||||||| ||  ||||  ||||||||||||| |  ||||||||||||| |||    
T  10719746 tattcttccatggtcataagaccaaattaatagtgtttggacacacacataaaaaaatggtccttaaaatattcaatcatttttttttatcaattttctc 10719845  T
Q  221 tttattatt 229  Q
    |||| ||||    
T  10719846 tttactatt 10719854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 37872291 - 37872201
Alignment:
Q  142 accaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 229  Q
    |||||||||||||| |||| | |||||||  ||||||||||||| || |||||||||||||||  ||||||||||||||||| ||||||||    
T  37872291 accaaatcaataatatttggacacacacacataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattatt 37872201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 37872342 - 37872302
Alignment:
Q  119 agatattcttccatggtcacaagaccaaatcaataatgttt 159  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872342 agatattcttccatggtcacaagaccaaatcaataatgttt 37872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 8026460 - 8026577
Alignment:
Q  115 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttt---ta 209  Q
    |||||| |||||||| || |||||||||||||||||||| |||||| |   | ||||||||||||||  || |  ||||||||||||||  ||||   ||    
T  8026460 aaggaggtattcttctatagtcacaagaccaaatcaatactgtttggacgcatacacataaaaagatggtctttaaaatattcaatcatttttttttata 8026559  T
Q  210 tcaatttcctctttatta 227  Q
    ||||||||||||||||||    
T  8026560 tcaatttcctctttatta 8026577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 3454259 - 3454358
Alignment:
Q  130 catggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 229  Q
    |||||| |||||| |||||||||||| |||    ||| | ||| ||||||||| ||  ||||||||||||||| |||||||||||||| | |||||||||    
T  3454259 catggttacaagatcaaatcaataatatttagtcacaaatatataaagattcttcttaaaatattcaatcatcttttttatcaatttcttttttattatt 3454358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 42285218 - 42285277
Alignment:
Q  171 taaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctctttattatt 229  Q
    |||||||||||||||| ||||||||||||| |  ||||||||||||||||| ||||||||    
T  42285218 taaaaagattctcctcaaaatattcaatcatttttttttatcaatttcctccttattatt 42285277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 3870024 - 3870135
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca----taaaaagattctcctctaaatattcaatcatcatttttatcaatttc 217  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  3870024 tattcttccatggtcacaagaccaaatcaataatgttttgacacacacagacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 3870123  T
Q  218 ctctttattatt 229  Q
    ||| ||||||||    
T  3870124 ctccttattatt 3870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 11028779 - 11028887
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 220  Q
    ||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||    
T  11028779 tattcttccatcgtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctccttaaaatattcaatcatctttttttatcaatttcctc 11028878  T
Q  221 tttattatt 229  Q
     ||||||||    
T  11028879 cttattatt 11028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 36400857 - 36400952
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatt 215  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaacacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 36400952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 28734183 - 28734070
Alignment:
Q  116 aggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 214  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||| |||||  |||||||||||    
T  28734183 aggaggtattcttccacggtcacaagaccaaatcaataatgtttggacacacacataaaaa-attctcctcaaaatactcactcatctttttttatcaat 28734085  T
Q  215 ttcctctttattatt 229  Q
    ||| |||||||||||    
T  28734084 ttcttctttattatt 28734070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 37721449 - 37721557
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 220  Q
    |||||||||||||||||||||||||||||||||| |||| | || | ||||||||||||||| || ||||||||||||| |  |||||||||||||||||    
T  37721449 tattcttccatggtcacaagaccaaatcaataatatttggacacgcgcataaaaagattctcttcaaaatattcaatcatttttttttatcaatttcctc 37721548  T
Q  221 tttattatt 229  Q
     ||||||||    
T  37721549 cttattatt 37721557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 38879517 - 38879625
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 220  Q
    ||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| |||||||  ||||||||||||| |||    
T  38879517 tattcttccatagtcacaagaccaaattaataatgtttggacacacacataaaaagattctcctcaaaatattaaatcatctttttttatcaattttctc 38879616  T
Q  221 tttattatt 229  Q
     | ||||||    
T  38879617 ctcattatt 38879625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 3647418 - 3647526
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 219  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||| |  ||||||||||||||| ||||||||||||| ||    
T  3647418 tattcttccttggtcacaagaccaaatcaataatgtttgaacacgaacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattttct 3647516  T
Q  220 ctttattatt 229  Q
    | || |||||    
T  3647517 ccttcttatt 3647526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 30706258 - 30706149
Alignment:
Q  123 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-----tcatttttatcaatttc 217  Q
    |||||| |||||||||||||||||||||||| ||||||   ||||||||||||||||  ||||  |||||||||||||     |  ||||||||||||||    
T  30706258 attcttacatggtcacaagaccaaatcaatagtgtttg--gacacacataaaaagatggtccttaaaatattcaatcatttttttttttttatcaatttc 30706161  T
Q  218 ctctttattatt 229  Q
    ||||||| ||||    
T  30706160 ctctttactatt 30706149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 6512191 - 6512079
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttg--aatacacacataaaaagattctcctct-aaatattcaatca---tcatttttatcaatt 215  Q
    |||| ||||||||||||||||||||||||||| ||||||   | ||||||||||||||| |   |||| |||||||||||||   |  ||||||||||||    
T  6512191 tattattccatggtcacaagaccaaatcaatagtgtttggacacacacacataaaaaga-tgaactctaaaatattcaatcatttttttttttatcaatt 6512093  T
Q  216 tcctctttattatt 229  Q
    ||||||||||||||    
T  6512092 tcctctttattatt 6512079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 3949378 - 3949317
Alignment:
Q  168 acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 229  Q
    |||||||||  |||||||| ||||||||||||||  |||||||||||||| | |||||||||    
T  3949378 acataaaaaatttctcctcaaaatattcaatcattttttttatcaatttcttttttattatt 3949317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 35362 - 35464
Alignment:
Q  118 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  35362 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 35461  T
Q  215 ttc 217  Q
    |||    
T  35462 ttc 35464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 2141348 - 2141240
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 220  Q
    ||||||||||||||||||||| || |||||||| ||||| | || |||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||    
T  2141348 tattcttccatggtcacaagatcatatcaataacgtttggacacccacataaaaagatttttctcaaaatattcaatcatctatttttatcaatttcctc 2141249  T
Q  221 tttattatt 229  Q
     ||||||||    
T  2141248 attattatt 2141240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 7080148 - 7080262
Alignment:
Q  117 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaat 214  Q
    |||| |||||||| ||||||||| |||||||||||||||||||| | ||||  |||||||||||||||| || ||||||||||| ||| |||||||||||    
T  7080148 ggaggtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataaaaagattctcttcaaaatattcaataatcttttttatcaat 7080247  T
Q  215 ttcctctttattatt 229  Q
    ||| |||||| ||||    
T  7080248 ttcgtctttaatatt 7080262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 25337023 - 25336928
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 216  Q
    ||||||||| ||||||||||| ||||||||||||||||| | |  |||||||||||| |||||| |  ||||||||||||||| |||||||||||||    
T  25337023 tattcttccttggtcacaagatcaaatcaataatgtttggacacgcacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattt 25336928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 18163 - 18084
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 201  Q
    |||||||||||||| |||||| | ||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  18163 tattcttccatggttacaagatccaatcaataatgtttgaacacacatagaaaaagattctcctcaaaatattcaatcat 18084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 25680 - 25767
Alignment:
Q  114 taaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 201  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||| | |||||| |||||||||| || || ||||||||||||||    
T  25680 taaggaggtattcttccatgatcacgagaccaaatcaataatgtttggacacacacgtaaaaagattttcatcaaaatattcaatcat 25767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 165 - 57
Alignment:
Q  122 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 219  Q
    |||||||||||| ||||||||||||||||||| |||||| | ||||  ||||||||||||  || |  ||||||||||||||  |||||||||||||| |    
T  165 tattcttccatgatcacaagaccaaatcaatagtgtttggacacacatacataaaaagatagtcttaaaaatattcaatcat-ttttttatcaatttcat 67  T
Q  220 ctttattatt 229  Q
    ||||||||||    
T  66 ctttattatt 57  T

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