View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10748_high_3 (Length: 237)
Name: NF10748_high_3
Description: NF10748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10748_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 35744477 - 35744252
Alignment:
| Q |
1 |
ttaattttttcttaaagaatcttctattaaaattgtggggacaaaccttcattgttgaatcgagtcaatccactaatatcatcaagaaaccctacaacat |
100 |
Q |
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| T |
35744477 |
ttaattttttcttaaagaatcttctattaaaattgtggggacaaaccttcattgttgaatcgagtcaatccactaatatcatcaagaaaccctacagcat |
35744378 |
T |
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| Q |
101 |
tagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacgtaagtgtattcctaactttttaattattgtcttctaatcactagtct |
200 |
Q |
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| T |
35744377 |
tagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacgtaagtgtattcctaactttttaattattgtcttctaatcactagtct |
35744278 |
T |
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| Q |
201 |
cccagcatagaatgggatcttcatga |
226 |
Q |
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| T |
35744277 |
cccagcatagaatgggatcttcatga |
35744252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 45513012 - 45512806
Alignment:
| Q |
9 |
ttcttaaagaatcttctattaaaat--tgtggggacaaaccttcattgttgaatcga-gtcaatccactaatatcatcaa------------gaaaccct |
93 |
Q |
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| T |
45513012 |
ttcttaaagaatcttctgttaacatattgtggggacaaaccttcattgttgaatctaagtcaatccattaatatcatcaaccaaacatttaagaaacctt |
45512913 |
T |
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| Q |
94 |
acaacattagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacgtaagtgtattcctaactttttaattattgtcttctaatca |
193 |
Q |
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| T |
45512912 |
acag-attataatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatttttaaatccttgtcttctaatca |
45512814 |
T |
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| Q |
194 |
ctagtctc |
201 |
Q |
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| T |
45512813 |
ctggtctc |
45512806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 26126739 - 26126688
Alignment:
| Q |
114 |
ggtttgtaacattttggcattccctctcaaaactgaaacgtaagtgtattcc |
165 |
Q |
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| T |
26126739 |
ggtttgtaaccttttggcgtttcctctcaaaactgaaacataagtatattcc |
26126688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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