View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10748_low_11 (Length: 208)
Name: NF10748_low_11
Description: NF10748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10748_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 35744823 - 35744631
Alignment:
| Q |
16 |
gagcattgattaaagtattaaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaacttgcattccaatacatgat |
115 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744823 |
gagcattgattaaagtattaaaataagtaattttgtaacaaattaaatatgtgtaattattggtaagacaaaagtaaaaacttgcattccaatacatgat |
35744724 |
T |
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| Q |
116 |
ttttactaatggattttttaactaatactcatagggcactgattaacaaaacccttaataaaattttatttattggaaaaaactttcgtgtct |
208 |
Q |
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| T |
35744723 |
ttctactaatggatttcttaaccaatactcatagtgcactgattaacaaaacccttaataaaattttatttattgaaaaaaactttcgtgtct |
35744631 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 13636238 - 13636319
Alignment:
| Q |
19 |
cattgattaaagtattaaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaacttgcatt |
103 |
Q |
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|||||||||||||||||||||||| || |||| |||||| ||| |||||| |||||| |||||||||||||||||| |||||| |
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| T |
13636238 |
cattgattaaagtattaaaataagtaactttgtaacaaa---aagttgtgtagttattgttaagacaaaagtaaaaacatgcatt |
13636319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 13736651 - 13736732
Alignment:
| Q |
19 |
cattgattaaagtattaaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaacttgcatt |
103 |
Q |
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|||||||||||||||||||||||| || |||| |||||| ||| |||||| |||||| |||||||||||||||||| |||||| |
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| T |
13736651 |
cattgattaaagtattaaaataagtaactttgtaacaaa---aagttgtgtagttattgttaagacaaaagtaaaaacatgcatt |
13736732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 3423747 - 3423880
Alignment:
| Q |
25 |
ttaaagtattaaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaacttgca-ttccaatacatgatttttacta |
123 |
Q |
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|||||||| ||||||||| ||||||| ||| || || ||||||||||||| |||||||||| |||||||||||| ||| || |||| |||| ||||| |
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| T |
3423747 |
ttaaagtactaaaataagtaattttgtaactaa---aacttgtgtaattattgctaagacaaaaataaaaacttgcatttctaaaacataatttctacta |
3423843 |
T |
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| Q |
124 |
atggattttttaactaatactcatagggcactgatta |
160 |
Q |
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||| |||| ||||| | ||| | || ||||||||||| |
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| T |
3423844 |
atgaatttcttaaccattacccttaaggcactgatta |
3423880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 46536647 - 46536724
Alignment:
| Q |
19 |
cattgattaaagtattaaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaacttg |
99 |
Q |
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|||||||||||||||||||||||| |||||||||| | |||| |||||| |||||| ||||||||||||||||||||| |
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| T |
46536647 |
cattgattaaagtattaaaataagtaattttgcaata---caaagttgtgtagttattgataagacaaaagtaaaaacttg |
46536724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 9552835 - 9552878
Alignment:
| Q |
60 |
aaagatgtgtaattattggtaagacaaaagtaaaaacttgcatt |
103 |
Q |
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|||| ||||||||||||| ||||||||||||||| ||||||||| |
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| T |
9552835 |
aaaggtgtgtaattattgataagacaaaagtaaatacttgcatt |
9552878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 26402124 - 26402014
Alignment:
| Q |
18 |
gcattgattaaagtattaaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaacttgca-ttccaatacatgatt |
116 |
Q |
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|||||| ||| |||| ||||||||| |||||| ||| ||| ||| |||||||| |||| |||||||||||| ||| |||||| |||||||||| ||| |
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| T |
26402124 |
gcattggttagagtactaaaataagtaatttttcaataaa---aagttgtgtaatcattgttaagacaaaagtgaaagcttgcatttccaatacaaaatt |
26402028 |
T |
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| Q |
117 |
tttactaatggatt |
130 |
Q |
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| T |
26402027 |
tctactaatggatt |
26402014 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 19028539 - 19028478
Alignment:
| Q |
34 |
taaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaactt |
98 |
Q |
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||||||||| || ||||||||||| ||| |||||||||||| |||||||||||||||||||| |
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| T |
19028539 |
taaaataagtaactttgcaacaaa---aagttgtgtaattattactaagacaaaagtaaaaactt |
19028478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 16209935 - 16209856
Alignment:
| Q |
17 |
agcattgattaaagtattaaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaacttg |
99 |
Q |
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||||||| |||||||| ||||||||| || ||| |||||| ||| ||||||| ||||| ||||||||||||||| ||||| |
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| T |
16209935 |
agcattggttaaagtactaaaataagtaactttaaaacaaa---aagttgtgtaactattgctaagacaaaagtaaacacttg |
16209856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 29140170 - 29140247
Alignment:
| Q |
20 |
attgattaaagtattaaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaacttg |
99 |
Q |
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|||| |||||||| ||||||||| ||||||| |||||| ||| ||||||||||||| |||| |||| |||||||||| |
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| T |
29140170 |
attggttaaagtactaaaataagtaattttgaaacaaa--aaaattgtgtaattattgctaaggaaaaaataaaaacttg |
29140247 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 23131557 - 23131485
Alignment:
| Q |
20 |
attgattaaagtattaaaataagcaattttgcaacaaattaaagatgtgtaattattggtaagacaaaagtaaaaa |
95 |
Q |
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|||| |||||||| ||||||||| |||||||||| ||| ||| || |||||||||| ||| ||||||||||||| |
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| T |
23131557 |
attggttaaagtactaaaataagtaattttgcaataaa---aagttgcgtaattattgctaaaacaaaagtaaaaa |
23131485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 2392657 - 2392556
Alignment:
| Q |
66 |
gtgtaattattggtaagacaaaagtaaaaacttgcattc-caatacatgatttttactaatggattttttaactaatactcatagggcactgattaacaa |
164 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||| ||| ||| ||| |||||||||||| ||||| ||| ||| |||||||||| ||| ||| |
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| T |
2392657 |
gtgtagttattgccaagacaaaagtaaaaacttgcatttacaagacaaagtttctactaatggattccttaaccaatgctcttagggcactggttagcaa |
2392558 |
T |
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| Q |
165 |
aa |
166 |
Q |
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|| |
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| T |
2392557 |
aa |
2392556 |
T |
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