View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10748_low_3 (Length: 366)
Name: NF10748_low_3
Description: NF10748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10748_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 3725003 - 3724653
Alignment:
| Q |
1 |
aaattaaactcagatggttgtaatcttaatctagtaagtgtattagtcaaatttcaactcatgtcttattttttctatgcatttctctcccatcccatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
3725003 |
aaattaaactcagatggttgtaatcttaatctagtaagtgtattagtcaaattttaactcatgtcgtatttttgctatgcatttctctcccatcccatga |
3724904 |
T |
|
| Q |
101 |
tagacttctatttagctcctcctcaaatatctaacaatcttaaaagttttgttccaatgaggtgtaagaaaacaggaatatatttgatgtatatttctac |
200 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3724903 |
tagacttttatttagctcctcctcaaatatccaacaatcttaaaagttttgttccaatgaggtgtaagaaaacaggaatatatttgatgtatagttctac |
3724804 |
T |
|
| Q |
201 |
acnnnnnnnnnnnnnnnnnnattagtttgtcacacctactaacatacacacccgactactagtgtaaaatctacttgtattcaggttttgtatttaacta |
300 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3724803 |
ac-ttttttgtttcttttttattagtttgtcacacctactaacatacacacacgactactagtgtaaaatctacttgtattcaggttttgtatttaacta |
3724705 |
T |
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| Q |
301 |
gaatgtaagtcatcacctatgaatgaataaaatgttggctatataaaagatg |
352 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
3724704 |
gaatgtaagtcatcacctatgaatggataaaatgttggatatataaaagatg |
3724653 |
T |
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