View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10748_low_6 (Length: 335)
Name: NF10748_low_6
Description: NF10748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10748_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 11632245 - 11632555
Alignment:
| Q |
1 |
ttagaggatggtgtagcattgctaaaggaatcttatagttatttgggcaaagaaatagaaaagttaagagatgaagctattgagattgaaaatgaagtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11632245 |
ttagaggatggtgtagcattgctaaaggaatcttatagttatttgggcaaagaaatagaaaagttaagagatgaagccattgagattgaaaatgaagtga |
11632344 |
T |
|
| Q |
101 |
taaaagttggagatgctatgtcatcaaagatgaacactctacaaagcaaagctgaagatatcagaaatatggctgggatttccttagaaaaacaacaaga |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
11632345 |
tcaaagttggagatgctatgtcatcaaagatgaacacgctacaaagcaaagctgaagatattggaaatatggctgggatttccttaggaaaacaacaaga |
11632444 |
T |
|
| Q |
201 |
acttttaaacggacaatccacggcactcgaaggcttaaattcgttgaatgaggttcaattcaaagcactcgaagagagcaggtaacattggttaaatttg |
300 |
Q |
| |
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||||||| | |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||| |
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| T |
11632445 |
acttttagatggacaatccacggcactcgaaggcctaaattcgttgaacgaggttcaattcaaagcactagaggagagcaggtaagattggttaaatttg |
11632544 |
T |
|
| Q |
301 |
tattcgtaaat |
311 |
Q |
| |
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||||| ||||| |
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|
| T |
11632545 |
tattcataaat |
11632555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 27087986 - 27087690
Alignment:
| Q |
1 |
ttagaggatggtgtagcattgctaaaggaatcttatagttatttgggcaaagaaatagaaaagttaagagatgaagctattgagattgaaaatgaagtga |
100 |
Q |
| |
|
||||||||||| || |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
27087986 |
ttagaggatggggttgcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaaaccattgagattgaaaatgaagtga |
27087887 |
T |
|
| Q |
101 |
taaaagttggagatgctatgtcatcaaagatgaacactctacaaagcaaagctgaagatatcagaaatatggctgggatttccttagaaaaacaacaaga |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| ||| |||||||||||||||||||||| |
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|
| T |
27087886 |
tcaaagttggagatgctatgtcatcaaagatgaacactctacaaaccaaagcggaagatattggaaatatggcaggggtttccttagaaaaacaacaaga |
27087787 |
T |
|
| Q |
201 |
acttttaaacggacaatccacggcactcgaaggcttaaattcgttgaatgaggttcaattcaaagcactcgaagagagcaggtaacattggttaaat |
297 |
Q |
| |
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||||||| |||||||||||||||||||| | || ||||||| ||||| ||||||||| |||||||| | || || ||||||||| ||||||||||| |
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|
| T |
27087786 |
acttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaactcaaagcattagaggaaagcaggtaagattggttaaat |
27087690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 26978697 - 26978993
Alignment:
| Q |
1 |
ttagaggatggtgtagcattgctaaaggaatcttatagttatttgggcaaagaaatagaaaagttaagagatgaagctattgagattgaaaatgaagtga |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| | |
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|
| T |
26978697 |
ttagaggatggtgtagcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattgagattgagaatgaagtta |
26978796 |
T |
|
| Q |
101 |
taaaagttggagatgctatgtcatcaaagatgaacactctacaaagcaaagctgaagatatcagaaatatggctgggatttccttagaaaaacaacaaga |
200 |
Q |
| |
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| ||||||||| || |||||||||||||||||||||||||||||| || || |||||||| |||||||||| ||| |||||||||||||||||||||| |
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|
| T |
26978797 |
tcaaagttggaaatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaaga |
26978896 |
T |
|
| Q |
201 |
acttttaaacggacaatccacggcactcgaaggcttaaattcgttgaatgaggttcaattcaaagcactcgaagagagcaggtaacattggttaaat |
297 |
Q |
| |
|
||||||| ||||||||||||| || ||| | || ||||||| ||||| |||||||||||||||||||| || || |||||||| || |||||||| |
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|
| T |
26978897 |
acttttagacggacaatccaccgcgctcaagggactaaattcattgaacgaggttcaattcaaagcactggaggaaagcaggtaggatcggttaaat |
26978993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 27020390 - 27020674
Alignment:
| Q |
1 |
ttagaggatggtgtagcattgctaaaggaatcttatagttatttgggcaaagaaatagaaaagttaagagatgaagctattgagattgaaaatgaagtga |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||| | |
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|
| T |
27020390 |
ttagaggatggtgtagcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagaggaagccattgagattgagaatgaagtta |
27020489 |
T |
|
| Q |
101 |
taaaagttggagatgctatgtcatcaaagatgaacactctacaaagcaaagctgaagatatcagaaatatggctgggatttccttagaaaaacaacaaga |
200 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||| || || ||||||||||||||||||| || |
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|
| T |
27020490 |
tcaaagttggagatactatgtcatcaaagatgaacactctacaaaccaaagcggaagatattggaaatattgcaagggtttccttagaaaaacaacatga |
27020589 |
T |
|
| Q |
201 |
acttttaaacggacaatccacggcactcgaaggcttaaattcgttgaatgaggttcaattcaaagcactcgaagagagcaggtaa |
285 |
Q |
| |
|
||||||| | || |||||||| |||||| | || ||||||| ||||| |||||||||||||||||| | || || ||||||||| |
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|
| T |
27020590 |
acttttagatgggcaatccacagcactcaagggactaaattcattgaacgaggttcaattcaaagcattagaggaaagcaggtaa |
27020674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 39748786 - 39748502
Alignment:
| Q |
1 |
ttagaggatggtgtagcattgctaaaggaatcttatagttatttgggcaaagaaatagaaaagttaagagatgaagctattgagattgaaaatgaagtga |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | || | |
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|
| T |
39748786 |
ttagaggatggggtagcattgctcaaggagtcttataattatttgggcaaagaaatagaaaagttaagagatgaagccattgagattgagaataaggtaa |
39748687 |
T |
|
| Q |
101 |
taaaagttggagatgctatgtcatcaaagatgaacactctacaaagcaaagctgaagatatcagaaatatggctgggatttccttagaaaaacaacaaga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||| ||||| || ||||| |||||||| | |
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|
| T |
39748686 |
tcaaagttggagatgctatgtcatcaaagatgaacattctacaaagcaaggctgaagatattgaaaatgtggcagggatctctttagataaacaacatca |
39748587 |
T |
|
| Q |
201 |
acttttaaacggacaatccacggcactcgaaggcttaaattcgttgaatgaggttcaattcaaagcactcgaagagagcaggtaa |
285 |
Q |
| |
|
|||| || | |||||||||||||||||| | | ||||||| |||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
39748586 |
acttgtagaaggacaatccacggcactcaagttcctaaattcattgaatgaggttcaattcaaagcactagaggaaagcaggtaa |
39748502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 34681092 - 34681388
Alignment:
| Q |
1 |
ttagaggatggtgtagcattgctaaaggaatcttatagttatttgggcaaagaaatagaaaagttaagagatgaagctattgagattgaaaatgaagtga |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| | |
|
|
| T |
34681092 |
ttagaggatggtgtagcattgctcaaagaatcttatagttatttgggaaaagaaatagaaaagttaagagatgaagccattgagattgagaatgaagtta |
34681191 |
T |
|
| Q |
101 |
taaaagttggagatgctatgtcatcaaagatgaacactctacaaagcaaagctgaagatatcagaaatatggctgggatttccttagaaaaacaacaaga |
200 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||||||||||||| || || |||||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
34681192 |
tcaaagttggaaatactatgtcatcaaagatgaacactctacaaactaaggcggaagatattggaaatatggcaggggtttccttagaaaaacaacaaga |
34681291 |
T |
|
| Q |
201 |
acttttaaacggacaatccacggcactcgaaggcttaaattcgttgaatgaggttcaattcaaagcactcgaagagagcaggtaacattggttaaat |
297 |
Q |
| |
|
||||||| |||||||||||||||||||| | || ||||||| ||||| |||||||||||||||||||| || || ||||||||| || |||||||| |
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|
| T |
34681292 |
acttttagacggacaatccacggcactcaagggactaaattcattgaacgaggttcaattcaaagcactagaggaaagcaggtaagatcggttaaat |
34681388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 1959832 - 1959758
Alignment:
| Q |
54 |
aatagaaaagttaagagatgaagctattgagattgaaaatgaagtgataaaagttggagatgctatgtcatcaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||| | || || |||||||||||||||||||||||||| |
|
|
| T |
1959832 |
aatagaaaagttaagagatgaagccattgaaattgagaataaggtaatcaaagttggagatgctatgtcatcaaa |
1959758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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