View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10748_low_7 (Length: 280)
Name: NF10748_low_7
Description: NF10748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10748_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 45217358 - 45217618
Alignment:
| Q |
9 |
agcaaaggagaattaattcattataacaaagacaaa----ttagtgaacagacaaaaatttaagacacaatattgaatatgacatgaatggtaaaaacac |
104 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217358 |
agcaaaggagaattaattcattataacaaaatatcagcttttagtgaacagacaaaaatttaagacacaatattgaatatgacatgaatggtaaaaacac |
45217457 |
T |
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| Q |
105 |
ttagagtttgagggacaaatcaagcttctgcaactcctcttgtttattcttcaaacttgtaacattataacctccaaatacattttgcacctttcttgga |
204 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45217458 |
ttagagtttgagggacaagtcaagcttctgcaactcctcttgtttattcttcaaacttgtaacattataacctccaaatccattttgcacctttcttgga |
45217557 |
T |
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| Q |
205 |
gaaaatttccctgatcttgtaggtatggcactagtcaaggatgatgatccatcagtttctg |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217558 |
gaaaatttccctgatcttgtaggtatggcactagtcaaggatgatgatccatcagtttctg |
45217618 |
T |
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