View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10749_high_1 (Length: 320)
Name: NF10749_high_1
Description: NF10749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10749_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 31388180 - 31387887
Alignment:
| Q |
18 |
aatgattggaccttataatcatcagaatttagatgaggaattaggtttatttgtcaaagaaaagtgcaacacactgctgggtgaagagccttttctattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31388180 |
aatgattggaccttataatcatcagaatttagatgaggaattaggtttatttgtcaaagaaaagtgcaacacactgctgggtgaagagccttttctattc |
31388081 |
T |
|
| Q |
118 |
ttcagattaatttccttgaaatttcatcgaaagagaaacgctactcatctcttctctcctataaaagggtttttctctgttgtataagcaaaaacctcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31388080 |
ttcagattaatttccttgaaatttcatcgaaagagaaacgcttctcatctcttctctcctataaaacggtttttctctgttgtataagcaaaaacctcac |
31387981 |
T |
|
| Q |
218 |
tcgattgtgaaacaccatgagatccatgctcaaccaaattgtgagatgggtgacacagccaatgatatggagatttgtgtcttttgtttcatct |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31387980 |
tcgattgtaaaacaccatgagatccatgctcaaccaaattgtgagatgggtgacacagccaatgatatggagatttgtgtcttttgtttcatct |
31387887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 65 - 310
Target Start/End: Complemental strand, 31460697 - 31460453
Alignment:
| Q |
65 |
tatttgtcaaagaaaagtgcaacacactgctgggtgaagagccttttctattcttcagattaatttccttgaaatttcatcgaaagagaaacgctactca |
164 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
31460697 |
tatttgtcaaagaaaactgcaacacactgctgg-taaagagccttttctattcttcagattaatttccttgaaatttcgtcgaaagagaaatgcttctca |
31460599 |
T |
|
| Q |
165 |
tctcttctctcctataaaagggtttttctctgttgtataagcaaaaacctcactcgattgtgaaacaccatgagatccatgctcaaccaaattgtgagat |
264 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
31460598 |
tctcttctctcctataaaacggtttttctttgttgtaaaagcaaaaacctcactcgattgtgaaacaccatgagatccatgctaacccaaattgtgagat |
31460499 |
T |
|
| Q |
265 |
gggtgacacagccaatgatatggagatttgtgtcttttgtttcatc |
310 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
31460498 |
gggtgacacagccaatgatctggagatgtgtgtgttttgtttcatc |
31460453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 31460787 - 31460734
Alignment:
| Q |
18 |
aatgattggaccttataatcatcagaatttagatgaggaattaggtttatttgt |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
31460787 |
aatgattggaccttataatcatcagaatttagatgaagaattaggtgtatttgt |
31460734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 31384540 - 31384470
Alignment:
| Q |
240 |
tccatgctcaaccaaattgtgagatgggtgacacagccaatgatatggagatttgtgtcttttgtttcatc |
310 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||| |||| ||||| ||||||||| | |||||||||||| |
|
|
| T |
31384540 |
tccacgctccacgaaattgtgagatgggtgacacatccaaagatatcgagatttgtttgttttgtttcatc |
31384470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 31483643 - 31483680
Alignment:
| Q |
273 |
cagccaatgatatggagatttgtgtcttttgtttcatc |
310 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
31483643 |
cagctaatgatatggagatttgtgtgttttgtttcatc |
31483680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University