View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10749_low_2 (Length: 239)

Name: NF10749_low_2
Description: NF10749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10749_low_2
NF10749_low_2
[»] chr1 (15 HSPs)
chr1 (36-223)||(3877485-3877668)
chr1 (46-172)||(32083255-32083381)
chr1 (1-148)||(32066805-32066949)
chr1 (1-172)||(35828903-35829074)
chr1 (47-172)||(51441274-51441399)
chr1 (47-172)||(7921574-7921699)
chr1 (56-172)||(19936177-19936294)
chr1 (44-133)||(28528225-28528314)
chr1 (88-172)||(51234302-51234386)
chr1 (75-134)||(12807635-12807694)
chr1 (46-172)||(1210391-1210517)
chr1 (47-172)||(27445545-27445670)
chr1 (1-97)||(40419282-40419378)
chr1 (46-172)||(43240891-43241017)
chr1 (46-172)||(51601704-51601830)
[»] chr3 (9 HSPs)
chr3 (46-172)||(25191025-25191151)
chr3 (1-172)||(48221385-48221556)
chr3 (47-148)||(27917219-27917320)
chr3 (46-172)||(38849740-38849866)
chr3 (46-172)||(47542221-47542347)
chr3 (58-149)||(26489975-26490066)
chr3 (1-132)||(32490274-32490405)
chr3 (1-71)||(1448224-1448294)
chr3 (46-172)||(51448219-51448345)
[»] chr2 (14 HSPs)
chr2 (46-172)||(45368134-45368259)
chr2 (43-172)||(11992616-11992745)
chr2 (46-172)||(38453130-38453256)
chr2 (16-96)||(12904584-12904664)
chr2 (1-172)||(24584116-24584287)
chr2 (46-172)||(4807238-4807364)
chr2 (46-171)||(41763560-41763685)
chr2 (46-172)||(2610174-2610300)
chr2 (1-147)||(7789074-7789220)
chr2 (56-172)||(452132-452248)
chr2 (12-96)||(23866267-23866351)
chr2 (21-169)||(37281730-37281878)
chr2 (46-172)||(8180426-8180552)
chr2 (46-172)||(13148959-13149085)
[»] scaffold0606 (1 HSPs)
scaffold0606 (12-133)||(9269-9390)
[»] chr4 (18 HSPs)
chr4 (1-126)||(10775975-10776100)
chr4 (46-172)||(27450683-27450809)
chr4 (1-97)||(33369371-33369464)
chr4 (46-172)||(435875-436001)
chr4 (74-172)||(3273096-3273194)
chr4 (46-172)||(31960324-31960450)
chr4 (46-172)||(33226855-33226981)
chr4 (46-172)||(48623037-48623163)
chr4 (59-172)||(1629090-1629203)
chr4 (1-138)||(47265748-47265885)
chr4 (42-133)||(39754920-39755011)
chr4 (46-173)||(56374936-56375063)
chr4 (46-172)||(1777525-1777651)
chr4 (46-172)||(23906811-23906937)
chr4 (1-172)||(41427440-41427610)
chr4 (21-148)||(17666572-17666696)
chr4 (60-157)||(20917642-20917739)
chr4 (43-107)||(25597933-25597997)
[»] chr5 (15 HSPs)
chr5 (46-172)||(3394356-3394482)
chr5 (46-172)||(3301495-3301621)
chr5 (46-172)||(12492897-12493023)
chr5 (46-172)||(20318637-20318763)
chr5 (47-108)||(25937719-25937780)
chr5 (16-156)||(43558340-43558480)
chr5 (12-129)||(6368478-6368595)
chr5 (56-133)||(27302496-27302573)
chr5 (56-172)||(1274921-1275037)
chr5 (46-172)||(2075984-2076110)
chr5 (46-172)||(10638943-10639069)
chr5 (1-134)||(16347950-16348083)
chr5 (39-128)||(21363013-21363102)
chr5 (56-136)||(17341747-17341827)
chr5 (56-172)||(24178180-24178296)
[»] chr7 (12 HSPs)
chr7 (46-172)||(38606651-38606777)
chr7 (56-156)||(24177721-24177821)
chr7 (46-172)||(46356361-46356487)
chr7 (46-126)||(32630253-32630333)
chr7 (57-172)||(37616573-37616688)
chr7 (46-172)||(11593606-11593732)
chr7 (46-172)||(36651640-36651766)
chr7 (56-97)||(18608275-18608316)
chr7 (56-97)||(18626562-18626603)
chr7 (56-97)||(18637236-18637277)
chr7 (56-97)||(18650671-18650712)
chr7 (46-135)||(49028913-49029002)
[»] scaffold0024 (1 HSPs)
scaffold0024 (56-168)||(82377-82489)
[»] chr6 (8 HSPs)
chr6 (56-172)||(5258660-5258776)
chr6 (56-172)||(9706432-9706548)
chr6 (46-168)||(10100371-10100493)
chr6 (1-175)||(7079742-7079909)
chr6 (46-172)||(20428146-20428272)
chr6 (59-172)||(5631476-5631590)
chr6 (8-108)||(3632624-3632724)
chr6 (75-175)||(8811840-8811940)
[»] chr8 (9 HSPs)
chr8 (56-172)||(4033004-4033120)
chr8 (1-136)||(41444849-41444985)
chr8 (1-129)||(38667160-38667286)
chr8 (57-172)||(42854514-42854629)
chr8 (46-172)||(36565751-36565877)
chr8 (102-156)||(18124878-18124932)
chr8 (43-97)||(18849700-18849754)
chr8 (46-172)||(36544798-36544924)
chr8 (46-135)||(12492389-12492478)
[»] scaffold0570 (1 HSPs)
scaffold0570 (46-172)||(2780-2906)
[»] scaffold0113 (1 HSPs)
scaffold0113 (56-135)||(12145-12224)
[»] scaffold0896 (1 HSPs)
scaffold0896 (75-175)||(4286-4386)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 3877485 - 3877668
Alignment:
Q  36 ttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagca 135  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3877485 ttctgttttagaggtaaaaattggagattatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagca 3877584  T
Q  136 aatataattcatcaaattcaatatgggtggttgaaattaatgaatgagtttaatggaaatatggtttatgattaaacatggtaacata 223  Q
    ||||||||||||||||||||||||||||| |||||||||||||    ||| ||  |||||||||||||||||||||||||||||||||    
T  3877585 aatataattcatcaaattcaatatgggtgcttgaaattaatga----gttgaaccgaaatatggtttatgattaaacatggtaacata 3877668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 32083381 - 32083255
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| || ||||||||||||||| |||||||||| || |||| || ||||||||||| |||||| ||| ||    
T  32083381 gaggtgaaagttggagatcatatcataccccaagttgcacaatttaaatatcttgggtccatagtacaaaatgacggagaaatagaggcaaatgtaaatc 32083282  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  32083281 atcgtattcaagctgggtggttgaaat 32083255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 32066949 - 32066805
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||| ||| |||||||||||||||  ||| || |||||  |||||||| ||||||||||||||||||||   |||| ||||||| |||||||||  ||    
T  32066949 tatatgtaatgtaattttagcaaaaggtgaagtagttctaccttagaggtgaaaattggagatcatatcat---acaagttacacagtttaaatattttg 32066853  T
Q  101 ggtccataatataaaacgatggagaaatagaagcaaatataattcatc 148  Q
    ||| |||| || |||| ||  |||||||| |||||||| ||| |||||    
T  32066852 ggttcatagtacaaaatgacagagaaataaaagcaaatgtaaatcatc 32066805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 35829074 - 35828903
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||||||| |||||||||||||||||  | || |||||  || ||||| |||  | |||||||||||||  ||||| |||| |   ||||| ||| ||    
T  35829074 tatatgaaatgtaattttagcaaaagacatagtagttctaccttggaggtgaaagctagagatcatatcataccacaagttacgctgcttaaacatcttg 35828975  T
Q  101 ggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 172  Q
    |||||||| || ||| ||| ||||||||||||||| || ||| ||||| ||||| || || |||||||||||    
T  35828974 ggtccatagtacaaagcgacggagaaatagaagcatatgtaaatcatcgaattcgatctgtgtggttgaaat 35828903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 51441399 - 51441274
Alignment:
Q  47 aggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattca 146  Q
    |||| ||| ||||||||||||||||  | ||| ||||||| |||||||||| ||||||  | ||| |||| || ||||||||||||||| || |||  ||    
T  51441399 aggtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggtctttcatacaaaatgacggagaaatagaagcagatctaagcca 51441300  T
Q  147 tcaaattcaatatgggtggttgaaat 172  Q
    ||| ||||||  ||||||||||||||    
T  51441299 tcatattcaagctgggtggttgaaat 51441274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 7921574 - 7921699
Alignment:
Q  47 aggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattca 146  Q
    |||| ||| |||||||||||||| |  ||||| |||||| ||||| ||||| ||| |||||| || |||||||| |||||||||||| | || |||  ||    
T  7921574 aggtgaaagttggagatcatatcttaccacaagttacacgatttatatatcttggatccatagtacaaaacgattgagaaatagaaggagatgtaaacca 7921673  T
Q  147 tcaaattcaatatgggtggttgaaat 172  Q
    || |||||||  ||||| ||||||||    
T  7921674 tcgaattcaagttgggttgttgaaat 7921699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 19936177 - 19936294
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaac-gatggagaaatagaagcaaatataattcatcaaattc 154  Q
    ||||||||||||||||  | ||| |||||   |||||||||| ||||||||||||| ||||  || ||||||||||||||| || ||| |||||  ||||    
T  19936177 ttggagatcatatcataccccaagttacatggtttaaatatcttgggtccataatacaaaaatgaaggagaaatagaagcatatgtaaatcatcgtattc 19936276  T
Q  155 aatatgggtggttgaaat 172  Q
    ||  ||||||||||||||    
T  19936277 aagctgggtggttgaaat 19936294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 28528225 - 28528314
Alignment:
Q  44 tagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaag 133  Q
    ||||||| ||| |||||||||||| |||  ||||| ||||||| |||||||||| |||||| ||  || ||||| |||||||||||||||    
T  28528225 tagaggtgaaagttggagatcatagcataccacaagttacacagtttaaatatcttgggtctatgttacaaaacaatggagaaatagaag 28528314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 51234302 - 51234386
Alignment:
Q  88 tttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 172  Q
    |||||||||| || ||||||| |  |||| ||||||||||| |||||| || ||| |||||||||||||  ||||||||||||||    
T  51234302 tttaaatatcttgagtccatagtgcaaaatgatggagaaattgaagcagatgtaaatcatcaaattcaagttgggtggttgaaat 51234386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 12807694 - 12807635
Alignment:
Q  75 acaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagc 134  Q
    |||| |||||||||||||||||| ||| |||||| |||||||||| | ||||||||||||    
T  12807694 acaagttacacaatttaaatatcttggatccatagtataaaacgacgaagaaatagaagc 12807635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 1210391 - 1210517
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||| |||||||||| ||||||  |  || |||| |||||||||||| ||||| || |||  |    
T  1210391 gaggtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggtctttcgtacaaaatgatggagaaataaaagcagatgtaagcc 1210490  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  1210491 atcgtattcaagctgggtggttgaaat 1210517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 27445545 - 27445670
Alignment:
Q  47 aggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattca 146  Q
    |||| ||| ||||||||| ||||||  | ||| ||||||  ||||| |||  |||||||||| || |||| |||||||||||||||||| || ||| |||    
T  27445545 aggtgaaagttggagatcttatcataccccaagttacacggtttaattatgttgggtccatagtacaaaatgatggagaaatagaagcagatgtaaatca 27445644  T
Q  147 tcaaattcaatatgggtggttgaaat 172  Q
    ||  ||||||  ||| ||||||||||    
T  27445645 tcgtattcaagttggttggttgaaat 27445670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 40419282 - 40419378
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatc 97  Q
    |||||| ||| ||||||||||||||| | ||  |||||||   || |||| ||| ||||||||||||||||  ||||| ||||||| ||||||||||    
T  40419282 tatatggaatgtaattttagcaaaaggcaaagcatttctagcgtaaaggtgaaagttggagatcatatcataccacaagttacacagtttaaatatc 40419378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 43241017 - 43240891
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||| ||| |  || |||| || |||||||| |||||| || |||  |    
T  43241017 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttggatccttcgtacaaaatgacggagaaatggaagcagatgtaagcc 43240918  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||| ||||||  ||||||||||||||    
T  43240917 atcatattcaagctgggtggttgaaat 43240891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 51601704 - 51601830
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  51601704 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 51601803  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  |||||||| |||||    
T  51601804 atcgtattcaagctgggtggtggaaat 51601830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 25191025 - 25191151
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| |||||| ||| || |||| ||||||||||||||||||||| ||| ||    
T  25191025 gaggtgaaagttggagatcatatcatagcccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcaaatgtaaatc 25191124  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  25191125 atcgtattcaagctgggtggttgaaat 25191151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 48221385 - 48221556
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||| ||| |||||| ||||||||  | | || |||||| |||||||| ||| ||| ||||||||||||  ||||| ||||||| |||||||||| ||    
T  48221385 tatatgtaatgtaatttcagcaaaaggtgtagtagttctatcttagaggtgaaagttgaagatcatatcataccacaagttacacattttaaatatcttg 48221484  T
Q  101 ggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 172  Q
    | | |||| || |||| ||  ||||| |||||||| || ||| ||||| |||||||  ||| ||||||||||    
T  48221485 gattcatagtacaaaatgacagagaagtagaagcatatgtaaatcatcgaattcaaactggatggttgaaat 48221556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 27917219 - 27917320
Alignment:
Q  47 aggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattca 146  Q
    |||| ||| |||||||||||||||| || ||| ||||||  |||||||||| || ||||||| || |||| || ||||||||| ||||| |||||| |||    
T  27917219 aggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttgagtccatagtacaaaatgacggagaaatataagcatatataaatca 27917318  T
Q  147 tc 148  Q
    ||    
T  27917319 tc 27917320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 38849740 - 38849866
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| |||||||| | || |||| || ||||||||||||||| || |||  |    
T  38849740 gaggtgaaagttggagatcatatcatacctcaatttacacggtttaaatatcttgggtccacagtacaaaatgacggagaaatagaagcagatgtaagcc 38849839  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    ||   ||||||  ||||||||||||||    
T  38849840 attgtattcaagctgggtggttgaaat 38849866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 47542347 - 47542221
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||| ||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  47542347 gaggtgaaagttggagatcatttcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 47542248  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||| ||||||  ||||||||||||||    
T  47542247 atcatattcaagctgggtggttgaaat 47542221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 26489975 - 26490066
Alignment:
Q  58 ggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatca 149  Q
    ||||||||||||||    ||| |||||  ||||||||||| ||| ||||| |||||||| || ||||||||||||||| || ||| ||||||    
T  26489975 ggagatcatatcatactccaagttacatgatttaaatatcttggttccatgatataaaatgacggagaaatagaagcagatgtaaatcatca 26490066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 32490405 - 32490274
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    ||||||||||  || |||||||||||  ||| | ||||||  ||| || | ||| ||| ||||||||||||  ||||| ||||||||||||||| || ||    
T  32490405 tatatgaaatgcaagtttagcaaaaggtgaagtgtttctaacttatagatgaaagttgaagatcatatcataccacaagttacacaatttaaatttcttg 32490306  T
Q  101 ggtccataatataaaacgatggagaaatagaa 132  Q
    |||| ||| ||||| |||| | | ||||||||    
T  32490305 ggtctatattataagacgacgaaaaaatagaa 32490274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1448294 - 1448224
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcat 71  Q
    ||||||||||| ||||||| ||| ||  |||  |||||||  |||||||||||| ||||||||||||||||    
T  1448294 tatatgaaataaaattttaacaagaggtgaaacatttctagcttagaggtaaaagttggagatcatatcat 1448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 51448345 - 51448219
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||       
T  51448345 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagct 51448246  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  51448245 atcgtattcaagctgggtggttgaaat 51448219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 45368259 - 45368134
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||||||||||  |||||||||| ||||||||||||| |||| |||||||||||||||||| || ||| |     
T  45368259 gaggtgaaagttggagatcatatcatacc-caaattacacggtttaaatatcttgggtccataatacaaaatgatggagaaatagaagcagatgtaaatt 45368161  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  45368160 atcgtattcaagctgggtggttgaaat 45368134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 11992745 - 11992616
Alignment:
Q  43 ttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataa 142  Q
    |||||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| |||||| ||| || |||| |||||||||||||||||| || |||    
T  11992745 ttagaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcagatgtaa 11992646  T
Q  143 ttcatcaaattcaatatgggtggttgaaat 172  Q
     |||||  ||||||  ||||||||||||||    
T  11992645 atcatcgtattcaagctgggtggttgaaat 11992616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 38453256 - 38453130
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| |||||| ||||||||||| ||||||| | ||| |||| || ||||||||||||||| || |||  |    
T  38453256 gaggtgaaagttggagatcatatcataccccaagttacacgatttaaatatcttgggtccttcatacaaaatgacggagaaatagaagcatatgtaagcc 38453157  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||| ||||||  ||||||||||||||    
T  38453156 atcatattcaagctgggtggttgaaat 38453130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 12904584 - 12904664
Alignment:
Q  16 tttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatat 96  Q
    ||||||||||| ||||   |||||| |||||||||| ||||||||||||||||||| |||||| ||||||  |||||||||    
T  12904584 tttagcaaaaggcgaaacgtttctagtttagaggtacaaattggagatcatatcatatcacaagttacacggtttaaatat 12904664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 24584287 - 24584116
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||| ||| ||| || ||||||||  ||||||| ||||  || ||||| ||| |||||||||||||||   | ||| ||||||  |||||||||| ||    
T  24584287 tatatggaatgtaacttcagcaaaaggagaattatgtctaccttggaggtgaaagttggagatcatatcagaccgcaagttacacggtttaaatatcttg 24584188  T
Q  101 ggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 172  Q
    |||||||| || |||| |||||||||||| | ||| || |||  ||||| ||||||  |||||||| |||||    
T  24584187 ggtccatagtacaaaatgatggagaaatataggcagatttaagccatcatattcaagctgggtggtggaaat 24584116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 4807238 - 4807364
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||| |||||||||| ||||||  |  || |||| || ||||||||||||||| || |||  |    
T  4807238 gaggtgaaagttggagatcatatcataccccaagttacacagtttaaatatcttgggtctttcgtacaaaatgacggagaaatagaagcagatgtaagcc 4807337  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  |||||| |||||||||||||||    
T  4807338 atcgtattcaagatgggtggttgaaat 4807364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 41763685 - 41763560
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| |||||||| |||||||  | ||| || ||| ||||||||||| |||||||||| || |||| |  ||||||||||||||| || ||| ||    
T  41763685 gaggtgaaagttggagattatatcataccccaagttgcacgatttaaatatcttgggtccatagtacaaaatgtcggagaaatagaagcagatgtaaatc 41763586  T
Q  146 atcaaattcaatatgggtggttgaaa 171  Q
    |||  ||||||  |||||||||||||    
T  41763585 atcgtattcaagctgggtggttgaaa 41763560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 2610174 - 2610300
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| ||  |||||||||||||| || |||  |    
T  2610174 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacagagaaatagaagcagatgtaaacc 2610273  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||| ||||||  ||||||||||||||    
T  2610274 atcatattcaagctgggtggttgaaat 2610300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 7789220 - 7789074
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||||||| |||||| || |||||| ||| ||||| || |||||| || ||  || |||||||||| ||  || || |||| || |||||||||||||    
T  7789220 tatatgaaatgtaatttcagtaaaagatgaagtatttatactttagatgtgaaggtttgagatcatatgataccataagttacgcattttaaatatcatg 7789121  T
Q  101 ggtccataatataaaacgatggagaaatagaagcaaatataattcat 147  Q
    ||| ||||||| ||||  |  |||||||| ||||| |||||| ||||    
T  7789120 ggttcataatacaaaataacagagaaatataagcatatataaatcat 7789074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 452248 - 452132
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattca 155  Q
    ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  ||||  |||||    
T  452248 ttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtattca 452149  T
Q  156 atatgggtggttgaaat 172  Q
    |  ||||||||||||||    
T  452148 agctgggtggttgaaat 452132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 23866267 - 23866351
Alignment:
Q  12 taattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatat 96  Q
    |||||||| |||||| | || || |||||  ||||| || ||| || |||||||||||||  |||||||||||||||||||||||    
T  23866267 taattttaacaaaaggcaaagtagttctaacttagatgtgaaagttagagatcatatcataccacaaattacacaatttaaatat 23866351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 37281730 - 37281878
Alignment:
Q  21 caaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgat 120  Q
    |||||||| || || |||||  || ||||| ||| || |||||||| ||||  | ||| ||||||| |||||||||| | | |||||| ||||||| ||     
T  37281730 caaaagacaaagtagttctaccttggaggtgaaagtttgagatcatgtcataccccaagttacacattttaaatatcttagctccatagtataaaatgaa 37281829  T
Q  121 ggagaaatagaagcaaatataattcatcaaattcaatatgggtggttga 169  Q
    ||||||||||||| | || ||| |||||  ||||||  |||||||||||    
T  37281830 ggagaaatagaagtagatgtaaatcatcctattcaagttgggtggttga 37281878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 8180426 - 8180552
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||    ||| ||||||  |||||||||  ||||||| |  ||||||| || ||||||||||||||| || |||  |    
T  8180426 gaggtgaaagttggagatcatatcatactccaagttacacggtttaaatattttgggtccttcttataaaatgacggagaaatagaagcagatgtaagcc 8180525  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  8180526 atcgtattcaagctgggtggttgaaat 8180552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 13148959 - 13149085
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  ||||||||||   |||||||| || |||| || ||||||||||||| | ||| || ||    
T  13148959 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatctcaggtccatagtacaaaatgacggagaaatagaagtagatacaaatc 13149058  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||| ||||||||||    
T  13149059 atcgtattcaagttggatggttgaaat 13149085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 9269 - 9390
Alignment:
Q  12 taattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataata 111  Q
    |||||||||||||||  ||||| |||||| ||||||||||||| |||||||||||||||| | |  | |||||| ||||||||||| | |||  ||| ||    
T  9269 taattttagcaaaaggtgaattgtttctagtttagaggtaaaagttggagatcatatcatattattagttacacgatttaaatatcttaggtttatatta 9368  T
Q  112 taaaacgatggagaaatagaag 133  Q
    |||||||||| |||||| ||||    
T  9369 taaaacgatgaagaaatggaag 9390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 10776100 - 10775975
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||| ||| ||||||||||||||| |||| | |||||| ||||||||  ||| ||||||||||||||||  ||||| |||||   |||||||||| ||    
T  10776100 tatatggaatgtaattttagcaaaaggcgaaatgtttctagtttagaggggaaagttggagatcatatcataccacaagttacatggtttaaatatcttg 10776001  T
Q  101 ggtccataatataaaacgatggagaa 126  Q
    |||| |||||| |||| |||||||||    
T  10776000 ggtctataatacaaaatgatggagaa 10775975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 27450809 - 27450683
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||| |||| ||||| |||||||||| |  |||| |||||||||||||||||| || ||| ||    
T  27450809 gaggtgaaagttggagatcatatcataccccaagttacacagtttacatatcttgggtccatagtgcaaaatgatggagaaatagaagcagatgtaaatc 27450710  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  27450709 atcgtattcaagctgggtggttgaaat 27450683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33369371 - 33369464
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatc 97  Q
    |||||||||| |||||||||   |||||||| ||||| ||||||||| |||||| || |||||||||||||  |||||||||||  |||||||||||    
T  33369371 tatatgaaatgtaattttag---aagacgaaatatttttattttagatgtaaaagttagagatcatatcataccacaaattacatgatttaaatatc 33369464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 435875 - 436001
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  ||||||| || ||||||||||||||| || ||| ||    
T  435875 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtataaaatgacggagaaatagaagcagatgtaagtc 435974  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  || |||||||||||    
T  435975 atcgtattcaagctgagtggttgaaat 436001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 3273096 - 3273194
Alignment:
Q  74 cacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 172  Q
    ||||| |||||||||||||| ||| | |||||||| || |||||||   ||||||||||||||||||||  |||| |||||||  ||| ||||||||||    
T  3273096 cacaagttacacaatttaaacatcttaggtccatagtacaaaacgacaaagaaatagaagcaaatataaaccatcgaattcaagttggatggttgaaat 3273194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 31960450 - 31960324
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  31960450 gaggtgaaagttggagatcatatcataccccaatttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 31960351  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||| ||||||  ||||||||||||||    
T  31960350 atcatattcaagctgggtggttgaaat 31960324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 33226855 - 33226981
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  33226855 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 33226954  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||| ||||||  ||||||||||||||    
T  33226955 atcatattcaagctgggtggttgaaat 33226981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 48623163 - 48623037
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||| ||||||||  | |||||||||| ||||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  48623163 gaggtgaaagttggagagcatatcataccccaaattacacgatttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 48623064  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  48623063 atcgtattcaagctgggtggttgaaat 48623037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 1629090 - 1629203
Alignment:
Q  59 gagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaata 158  Q
    ||||||||||| |  ||||| ||||| | |||||||||| ||  | |||| |||||||||||||||||||||||||| || ||| |||||  ||||||      
T  1629090 gagatcatatcgtgccacaagttacatagtttaaatatcttgaattcatagtataaaacgatggagaaatagaagcagatgtaaatcatcgtattcaact 1629189  T
Q  159 tgggtggttgaaat 172  Q
    || |||||||||||    
T  1629190 tgagtggttgaaat 1629203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 47265885 - 47265748
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||||||| ||| || ||||||||  ||| ||  ||||  || ||||| ||| |||||| |||||||||  | ||| ||||| | |||||||||| ||    
T  47265885 tatatgaaatgtaacttcagcaaaaggagaagtaggtctaccttggaggtgaaagttggaggtcatatcataccccaagttacatagtttaaatatcttg 47265786  T
Q  101 ggtccataatataaaacgatggagaaatagaagcaaat 138  Q
    | |||||| ||||||| || ||||||||||||||||||    
T  47265785 gatccatagtataaaatgacggagaaatagaagcaaat 47265748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 39755011 - 39754920
Alignment:
Q  42 tttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaag 133  Q
    ||||||||| ||| ||| ||||||||||||  ||||| | ||||| ||||||||||||||||| ||| || |||||||   |||||||||||    
T  39755011 tttagaggtgaaagttgaagatcatatcataccacaagtcacacactttaaatatcatgggtctatagtacaaaacgacaaagaaatagaag 39754920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 56374936 - 56375063
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||| ||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| ||||||  |    
T  56374936 gaggtgaaagttggagagcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatataagcc 56375035  T
Q  146 atcaaattcaatatgggtggttgaaatt 173  Q
    |||  ||||||  |||||||||||||||    
T  56375036 atcgtattcaagctgggtggttgaaatt 56375063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 1777651 - 1777525
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||| ||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| ||  ||||||||||||||||| ||| ||    
T  1777651 gaggtgaaagttggaaatcatatcataccccaagttacacgttttaaatatcttgggtccttcgtacaaaatgacagagaaatagaagcaaatgtaagtc 1777552  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  1777551 atcgtattcaagctgggtggttgaaat 1777525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 23906937 - 23906811
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  23906937 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 23906838  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  23906837 atcgtattcaagctgggtggttgaaat 23906811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 41427440 - 41427610
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||||||| |||||| ||||||| ||||| || |||||  ||| | || ||||||| ||||||||||||  | ||| |||||| | ||||||||| ||    
T  41427440 tatatgaaatgtaatttcagcaaaaaacgaagtagttctaccttaaaagtgaaaattgaagatcatatcataccccaagttacacgacttaaatatcttg 41427539  T
Q  101 ggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat 172  Q
     |  |||| || | || || ||||||||| |||||| || ||  ||||| ||||||  ||||||||||||||    
T  41427540 tgctcatagtacagaatgacggagaaatataagcaagtacaa-acatcacattcaagttgggtggttgaaat 41427610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 17666696 - 17666572
Alignment:
Q  21 caaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgat 120  Q
    |||||| |||| ||||||||| |||||||| ||  || |||||||||||||   |||| ||||||| |||||||||| ||||| || | || |||| |      
T  17666696 caaaaggcgaagtatttctatcttagaggtgaacgttagagatcatatcat---acaagttacacagtttaaatatcttgggttcaaagtacaaaatgtc 17666600  T
Q  121 ggagaaatagaagcaaatataattcatc 148  Q
    | ||||||| |||||||| ||| |||||    
T  17666599 gaagaaataaaagcaaatgtaaatcatc 17666572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 20917642 - 20917739
Alignment:
Q  60 agatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaat 157  Q
    ||||||||||||  || || ||||||| ||||||||||   | |||||| |||||||| | |||||||||||| || || ||| ||||| ||||||||    
T  20917642 agatcatatcataccataagttacacagtttaaatatccgagctccatagtataaaacaacggagaaatagaaacatatgtaagtcatcgaattcaat 20917739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 25597997 - 25597933
Alignment:
Q  43 ttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccat 107  Q
    ||||||| |||||||||||||||||  ||  ||||| | |||||| ||||||||| |||||||||    
T  25597997 ttagaggcaaaaattggagatcatactataccacaagtcacacaacttaaatatcttgggtccat 25597933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 3394356 - 3394482
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| |||||||||| || |||| || ||||||||||||||| || ||| ||    
T  3394356 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcagatgtaaatc 3394455  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  3394456 atcgtattcaagctgggtggttgaaat 3394482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 3301495 - 3301621
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| |||||||||| ||  ||| || ||||||||||||||| ||  || ||    
T  3301495 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatagtaccaaatgaaggagaaatagaagcagatgcaaatc 3301594  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  3301595 atcgtattcaagctgggtggttgaaat 3301621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 12493023 - 12492897
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||||||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  12493023 gaggtaaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 12492924  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  12492923 atcgtattcaagctgggtggttgaaat 12492897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 20318637 - 20318763
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  20318637 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 20318736  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||| ||||||  ||||||||||||||    
T  20318737 atcatattcaagctgggtggttgaaat 20318763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 25937719 - 25937780
Alignment:
Q  47 aggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccata 108  Q
    |||| ||| ||||||||||||||||| | |||||||||||| ||||||||| ||||||||||    
T  25937719 aggtgaaagttggagatcatatcattccccaaattacacaaattaaatatcttgggtccata 25937780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 43558480 - 43558340
Alignment:
Q  16 tttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaa 115  Q
    ||||||||||| | || | ||||||  | |||||| ||| |||||||||||| |||  ||||| |||||| ||||||||||| | |||||||  || |||    
T  43558480 tttagcaaaaggcaaagtgtttctagctcagaggtgaaagttggagatcatagcataccacaagttacacgatttaaatatcttaggtccattgtacaaa 43558381  T
Q  116 acgatggagaaatagaagcaaatataattcatcaaattcaa 156  Q
    || |  |||||||||||||| || ||| ||||| |||||||    
T  43558380 accacagagaaatagaagcagatgtaaatcatcgaattcaa 43558340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 6368595 - 6368478
Alignment:
Q  12 taattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataata 111  Q
    |||||||||||| ||  |||  ||||||| | ||||||| |||  ||||||||||| |||  ||||| |||||||||||||||||| ||  || ||| ||    
T  6368595 taattttagcaagaggtgaaacatttctaatgtagaggtgaaagatggagatcataacataccacaagttacacaatttaaatatcttgtatctatagta 6368496  T
Q  112 taaaacgatggagaaata 129  Q
     ||||||| |||||||||    
T  6368495 caaaacgacggagaaata 6368478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 27302573 - 27302496
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaag 133  Q
    ||||||||||||||||  | |||| |||||  |||||||||| || |||||||||| ||||||  |||||||||||||    
T  27302573 ttggagatcatatcatacctcaaactacacggtttaaatatcttgtgtccataatacaaaacggcggagaaatagaag 27302496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 1274921 - 1275037
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattca 155  Q
    ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  ||||  |||||    
T  1274921 ttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcgtattca 1275020  T
Q  156 atatgggtggttgaaat 172  Q
    |  ||||||||||||||    
T  1275021 agctgggtggttgaaat 1275037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 2076110 - 2075984
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| ||  |||||||||||||| || |||  |    
T  2076110 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacagagaaatagaagcagatgtaagcc 2076011  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  2076010 atcgtattcaagttgggtggttgaaat 2075984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 10638943 - 10639069
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||| ||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  10638943 gaggtgaaagttggaaatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 10639042  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  10639043 atcgtattcaagctgggtggttgaaat 10639069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 16348083 - 16347950
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||||||| ||| || ||||||||  ||| ||  ||||  || ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||    
T  16348083 tatatgaaatgtaacttcagcaaaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttg 16347984  T
Q  101 ggtccataatataaaacgatggagaaatagaagc 134  Q
     ||||||| || |||| || ||||||||| ||||    
T  16347983 tgtccatagtacaaaatgacggagaaataaaagc 16347950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 21363102 - 21363013
Alignment:
Q  39 tattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaat 128  Q
    ||||||| |||| |||| || | ||||||||||| ||||| ||||| | ||| |||||| ||| | |||| ||||||||||| |||||||    
T  21363102 tattttataggtgaaaaatgaacatcatatcattacacaagttacagagtttgaatatcttggattcatagtataaaacgatagagaaat 21363013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 17341827 - 17341747
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaa 136  Q
    ||||||||||||||||  |  ||||||||   |||||||||  |||||||||| || |||| ||| |||||||||||||||    
T  17341827 ttggagatcatatcatacctgaaattacatggtttaaatatattgggtccatagtagaaaatgatagagaaatagaagcaa 17341747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 24178180 - 24178296
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattca 155  Q
    ||||||||||||||||  |  || ||||||  |||||| ||| ||||||| |  || |||| || ||||||||||||||| || |||  ||||| |||||    
T  24178180 ttggagatcatatcataccctaagttacacggtttaaagatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagccatcatattca 24178279  T
Q  156 atatgggtggttgaaat 172  Q
    |  ||||||||||||||    
T  24178280 agttgggtggttgaaat 24178296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 38606651 - 38606777
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| |||||||||||||||| || ||| ||||||  |||||||||| |||||||||| || |||| || | ||||||||||||| || |||  |    
T  38606651 gaggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttgggtccatagtacaaaatgacgaagaaatagaagcagatgtaaacc 38606750  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  38606751 atcgtattcaagctgggtggttgaaat 38606777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 24177821 - 24177721
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattca 155  Q
    ||||||||||||||||  | ||| ||||||  ||||||||||| ||||| ||| || |||| || ||||||||||||||| || ||| |||||| |||||    
T  24177821 ttggagatcatatcataccccaatttacacggtttaaatatcacgggtcaatagtacaaaatgacggagaaatagaagcagatgtaaatcatcatattca 24177722  T
Q  156 a 156  Q
    |    
T  24177721 a 24177721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 46356487 - 46356361
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  46356487 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtcctttgtacaaaatgacggagaaatagaagcagatgtaagcc 46356388  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  46356387 atcgtattcaagttgggtggttgaaat 46356361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 32630253 - 32630333
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaa 126  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| |||||||||| || |||| |||||||||    
T  32630253 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatattacaaaatgatggagaa 32630333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 37616573 - 37616688
Alignment:
Q  57 tggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaa 156  Q
    |||||||||||||||  | ||| |||||| ||||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |||   ||||||    
T  37616573 tggagatcatatcataccccaagttacacgatttaaatatcttgggtcctttgtacaaaatgacggagaaatagaagcagatgtaagccattgtattcaa 37616672  T
Q  157 tatgggtggttgaaat 172  Q
      ||||||||||||||    
T  37616673 gctgggtggttgaaat 37616688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 11593606 - 11593732
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||| ||||||||||||  | ||| ||| ||  |||||||||| ||||||| |  || |||| |||||||||||||||||| || |||  |    
T  11593606 gaggtgaaagttgaagatcatatcataccccaagttagacggtttaaatatcttgggtccttcgtacaaaatgatggagaaatagaagcagatgtaagcc 11593705  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  11593706 atcgtattcaagctgggtggttgaaat 11593732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 36651640 - 36651766
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| |||| |  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  36651640 gaggtgaaagttggagatcatatcataccccaagttacgcggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagcagatgtaagcc 36651739  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  36651740 atcgtattcaagctgggtggttgaaat 36651766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 18608316 - 18608275
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatc 97  Q
    |||||||||||||||| |||||| ||||||| ||||||||||    
T  18608316 ttggagatcatatcatatcacaagttacacattttaaatatc 18608275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 18626562 - 18626603
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatc 97  Q
    |||||||||||||||| |||||| ||||||| ||||||||||    
T  18626562 ttggagatcatatcatatcacaagttacacattttaaatatc 18626603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 18637236 - 18637277
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatc 97  Q
    |||||||||||||||| |||||| ||||||| ||||||||||    
T  18637236 ttggagatcatatcatatcacaagttacacattttaaatatc 18637277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 18650671 - 18650712
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatc 97  Q
    |||||||||||||||| |||||| ||||||| ||||||||||    
T  18650671 ttggagatcatatcatatcacaagttacacattttaaatatc 18650712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 49028913 - 49029002
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagca 135  Q
    ||||| ||| |||||||||| |||||  | ||| ||||||  |||||||||| ||||||| |  || |||| ||||||||||||||||||    
T  49028913 gaggtgaaagttggagatcagatcataccccaagttacacggtttaaatatcttgggtcctttgtacaaaatgatggagaaatagaagca 49029002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 82377 - 82489
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattca 155  Q
    |||||||| |||||||  ||||| ||||||  |||||||||| |||||||||| || |||| || ||||||||||||||| || ||| |||||  |||||    
T  82377 ttggagattatatcataccacaagttacacggtttaaatatcttgggtccatagtaaaaaatgacggagaaatagaagcagatgtaaatcatcgtattca 82476  T
Q  156 atatgggtggttg 168  Q
    |  ||||||||||    
T  82477 agctgggtggttg 82489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 5258776 - 5258660
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattca 155  Q
    ||||||||||||||||  | ||| ||||||| |||||||||| |||||||||| || |||| || ||||||||||||||  || ||  |||||  |||||    
T  5258776 ttggagatcatatcataccccaagttacacagtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagctgatgtacatcatcgtattca 5258677  T
Q  156 atatgggtggttgaaat 172  Q
    |  ||||||||||||||    
T  5258676 agctgggtggttgaaat 5258660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 9706432 - 9706548
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattca 155  Q
    ||||||||||||||||  | ||| ||||||  |||||||||| |||||||||  || |||| ||||||||||||||||||  | ||| |||||  |||||    
T  9706432 ttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatggtacaaaatgatggagaaatagaagcaggtgtaaatcatcgtattca 9706531  T
Q  156 atatgggtggttgaaat 172  Q
    |  ||||||||||||||    
T  9706532 agctgggtggttgaaat 9706548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 10100493 - 10100371
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| |||||||||| || |||| |  ||||||||||||||  |||||| ||    
T  10100493 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccatagtacaaaatgtcggagaaatagaagctgatataaatc 10100394  T
Q  146 atcaaattcaatatgggtggttg 168  Q
    |||  ||||||  ||||||||||    
T  10100393 atcgtattcaagctgggtggttg 10100371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 7079742 - 7079909
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    ||||||||||||||||| |  ||||| ||||  ||||||| |||| |||| || ||||||||||||| ||     ||| ||||| ||||| |||||| |     
T  7079742 tatatgaaatataattt-attaaaag-cgaagcatttctaatttacaggtgaacattggagatcatacca-----caagttacaaaatttgaatatctta 7079834  T
Q  101 ggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaattaa 175  Q
    |||| ||| || |||||||||||||||| |||| |||| |||  ||| ||||||||  ||| |||||||||||||    
T  7079835 ggtctatagtacaaaacgatggagaaattgaaggaaatctaaaccataaaattcaagctggatggttgaaattaa 7079909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 20428272 - 20428146
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  ||||| |||| |  |||||||||  |||||||| | || ||||||| ||| ||||||||||| || ||| ||    
T  20428272 gaggtgaaagttggagatcatatcataccacaagttacgcggtttaaatatattgggtccacagtacaaaacgacggaaaaatagaagcagatgtaaatc 20428173  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  || |||  ||||||||||||||    
T  20428172 atcgtatccaagctgggtggttgaaat 20428146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 5631476 - 5631590
Alignment:
Q  59 gagatcatatcatttcacaaattacacaatttaaatatcat-gggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaat 157  Q
    |||||||||||||  | ||| ||||||  |||||||||  | ||||||||| || |||| || ||||||||||||||| || ||| |||||  ||||||     
T  5631476 gagatcatatcataccccaagttacacggtttaaatatttttgggtccatagtacaaaatgacggagaaatagaagcagatgtaaatcatcgtattcaag 5631575  T
Q  158 atgggtggttgaaat 172  Q
     ||||||||||||||    
T  5631576 ctgggtggttgaaat 5631590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 3632624 - 3632724
Alignment:
Q  8 aatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccat 107  Q
    |||||||||| |  |||| ||||| || |||||  || ||||| ||| ||||||||||||||||  |  ||||||||| ||||||||||| ||| |||||    
T  3632624 aatataatttaacaaaaatacgaagtagttctacctttgaggtgaaagttggagatcatatcataccctaaattacacgatttaaatatcttggatccat 3632723  T
Q  108 a 108  Q
    |    
T  3632724 a 3632724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 8811940 - 8811840
Alignment:
Q  75 acaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaatta 174  Q
    |||| ||||| |||||||||||| | |||| ||| || ||||||||||| |||| |||| |||| |||  ||| | ||||||  ||| ||||||||||||    
T  8811940 acaagttacaaaatttaaatatcttaggtctatagtacaaaacgatggataaattgaagaaaatctaaaccataagattcaagctggatggttgaaatta 8811841  T
Q  175 a 175  Q
    |    
T  8811840 a 8811840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 4033120 - 4033004
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattca 155  Q
    ||||||||||||||||  | ||| ||||||  ||||| |||| ||||| |||| || | || |||||||||||| ||||| || ||| |||||| |||||    
T  4033120 ttggagatcatatcataccccaagttacacggtttaagtatcttgggttcatagtacacaatgatggagaaataaaagcatatgtaaatcatcatattca 4033021  T
Q  156 atatgggtggttgaaat 172  Q
    |  ||||||||||||||    
T  4033020 agttgggtggttgaaat 4033004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 41444985 - 41444849
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatg 100  Q
    |||||| ||| ||||||||||||||| ||||  |||||||  |||||||| |||  |||||||||||||||  ||||| ||||    |||||||||| ||    
T  41444985 tatatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggtgaaaggtggagatcatatcataccacaagttacttggtttaaatatcttg 41444886  T
Q  101 gg-tccataatataaaacgatggagaaatagaagcaa 136  Q
    || || || ||| |||| |||| ||||||||||||||    
T  41444885 ggttcaatgatacaaaatgatgtagaaatagaagcaa 41444849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 38667160 - 38667286
Alignment:
Q  1 tatatgaaatataattttagcaaaagacgaattatttctattttagaggtaaaaattggagatcatatcatttcacaaattacaca-atttaaatatcat 99  Q
    |||||| ||| || |||||||||||| |||| || ||||||  ||||||| ||| ||||||||||||||||   |||| ||||| |  |||||||||| |    
T  38667160 tatatgtaatgtagttttagcaaaaggcgaagtagttctatcctagaggtgaaacttggagatcatatcat---acaagttacaaagttttaaatatctt 38667256  T
Q  100 gggtccataatataaaacgatggagaaata 129  Q
    |||| |||| || |||||||| ||||||||    
T  38667257 gggttcatagtacaaaacgatagagaaata 38667286  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 42854629 - 42854514
Alignment:
Q  57 tggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaa 156  Q
    |||||||||||||||  | ||| ||||||  |||||||||| |||||||||  || |||| | | |||||||||||||| || ||| |||||  ||||||    
T  42854629 tggagatcatatcataccccaagttacacggtttaaatatcttgggtccatcgtacaaaatgtttgagaaatagaagcagatgtaaatcatcgtattcaa 42854530  T
Q  157 tatgggtggttgaaat 172  Q
      ||||||||||||||    
T  42854529 gctgggtggttgaaat 42854514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 36565877 - 36565751
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || ||||||||||||||| || |||  |    
T  36565877 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtcctttgtacaaaatgacggagaaatagaagcagatgtaagcc 36565778  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  36565777 atcgtattcaagctgggtggttgaaat 36565751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 18124878 - 18124932
Alignment:
Q  102 gtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaa 156  Q
    |||||||||| |||| |||||||||||||||||| || ||| ||||| |||||||    
T  18124878 gtccataatacaaaatgatggagaaatagaagcagatgtaactcatcgaattcaa 18124932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 18849754 - 18849700
Alignment:
Q  43 ttagaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatc 97  Q
    |||||||||||||||||||||||||||||  | ||| ||||||  ||||||||||    
T  18849754 ttagaggtaaaaattggagatcatatcataccccaagttacacggtttaaatatc 18849700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 36544798 - 36544924
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| |||||   ||||||||||||||| |  |  || |||| || ||||||||||||||| || ||| ||    
T  36544798 gaggtgaaagttggagatcatatcataccccaagttacaaggtttaaatatcatggggctttcgtacaaaatgacggagaaatagaagcagatgtaagtc 36544897  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  36544898 atcgtattcaagttgggtggttgaaat 36544924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 12492478 - 12492389
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagca 135  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || |||||||||||||||    
T  12492478 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatagaagca 12492389  T

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Target: scaffold0570 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 2906 - 2780
Alignment:
Q  46 gaggtaaaaattggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattc 145  Q
    ||||| ||| ||||||||||||||||  | ||| ||||||  |||||||||| ||||||| |  || |||| || | ||||||||||||| || ||| ||    
T  2906 gaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacgaagaaatagaagcagatgtaagtc 2807  T
Q  146 atcaaattcaatatgggtggttgaaat 172  Q
    |||  ||||||  ||||||||||||||    
T  2806 atcgtattcaagctgggtggttgaaat 2780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 12224 - 12145
Alignment:
Q  56 ttggagatcatatcatttcacaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagca 135  Q
    ||||||||||||||||  | ||| |||||   |||||||||| |||||||||| || |||| || |||||||||||||||    
T  12224 ttggagatcatatcataccccaagttacatggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagca 12145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 4386 - 4286
Alignment:
Q  75 acaaattacacaatttaaatatcatgggtccataatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaatta 174  Q
    |||| ||||| |||||||||||| | |||| ||| || ||||||||||| |||| |||| |||| |||  ||| | ||||||  ||| ||||||||||||    
T  4386 acaagttacaaaatttaaatatcttaggtctatagtacaaaacgatggataaattgaagaaaatctaaaccataagattcaagctggatggttgaaatta 4287  T
Q  175 a 175  Q
    |    
T  4286 a 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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