View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10749_low_3 (Length: 229)

Name: NF10749_low_3
Description: NF10749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10749_low_3
NF10749_low_3
[»] chr6 (48 HSPs)
chr6 (1-229)||(30059918-30060146)
chr6 (9-150)||(29835238-29835379)
chr6 (1-150)||(29887312-29887461)
chr6 (9-150)||(29894576-29894717)
chr6 (1-150)||(28926382-28926531)
chr6 (9-150)||(29866672-29866813)
chr6 (1-140)||(24730870-24731009)
chr6 (9-147)||(29073786-29073924)
chr6 (9-147)||(29078550-29078688)
chr6 (9-147)||(29106359-29106497)
chr6 (4-150)||(24263587-24263733)
chr6 (1-150)||(30061830-30061979)
chr6 (9-140)||(24890091-24890222)
chr6 (1-150)||(29211228-29211377)
chr6 (4-140)||(29882453-29882589)
chr6 (4-140)||(29909609-29909745)
chr6 (9-138)||(24886413-24886541)
chr6 (9-150)||(29905662-29905803)
chr6 (1-150)||(30126890-30127039)
chr6 (4-140)||(29903264-29903400)
chr6 (9-150)||(30118576-30118717)
chr6 (9-146)||(29929296-29929433)
chr6 (21-140)||(29116296-29116415)
chr6 (1-140)||(29357824-29357963)
chr6 (9-150)||(29085041-29085182)
chr6 (12-150)||(29348433-29348571)
chr6 (9-150)||(29889753-29889894)
chr6 (21-108)||(29099378-29099465)
chr6 (1-128)||(29946452-29946579)
chr6 (12-89)||(29366317-29366394)
chr6 (1-77)||(29898092-29898168)
chr6 (22-150)||(29949732-29949860)
chr6 (4-93)||(29876843-29876932)
chr6 (1-85)||(30999838-30999922)
chr6 (17-83)||(16702057-16702123)
chr6 (4-79)||(24271853-24271928)
chr6 (22-137)||(29953542-29953657)
chr6 (92-150)||(24271799-24271857)
chr6 (143-228)||(30061617-30061705)
chr6 (1-102)||(30053442-30053543)
chr6 (65-140)||(29912051-29912126)
chr6 (65-140)||(29914071-29914146)
chr6 (16-107)||(30149557-30149648)
chr6 (22-84)||(15727090-15727152)
chr6 (143-229)||(29835504-29835590)
chr6 (143-229)||(29866938-29867024)
chr6 (143-229)||(29887586-29887672)
chr6 (22-110)||(30135161-30135250)
[»] scaffold0573 (1 HSPs)
scaffold0573 (1-150)||(4152-4301)
[»] scaffold0237 (1 HSPs)
scaffold0237 (4-140)||(22361-22497)
[»] chr3 (4 HSPs)
chr3 (1-104)||(24219116-24219219)
chr3 (13-83)||(33997967-33998037)
chr3 (22-150)||(16351086-16351214)
chr3 (16-77)||(24226850-24226911)
[»] chr2 (1 HSPs)
chr2 (1-124)||(15062737-15062860)
[»] scaffold0572 (1 HSPs)
scaffold0572 (1-84)||(3248-3331)
[»] chr1 (3 HSPs)
chr1 (1-95)||(10130152-10130246)
chr1 (1-84)||(41316274-41316358)
chr1 (13-73)||(41198768-41198828)
[»] chr7 (1 HSPs)
chr7 (22-150)||(3643073-3643201)
[»] scaffold0014 (3 HSPs)
scaffold0014 (1-149)||(137389-137537)
scaffold0014 (1-71)||(104652-104722)
scaffold0014 (41-83)||(121382-121424)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-49)||(53532-53580)
[»] scaffold0019 (1 HSPs)
scaffold0019 (22-84)||(126024-126086)
[»] scaffold0429 (1 HSPs)
scaffold0429 (1-84)||(6211-6294)
[»] scaffold0051 (2 HSPs)
scaffold0051 (22-84)||(47804-47866)
scaffold0051 (1-69)||(43201-43269)
[»] chr4 (1 HSPs)
chr4 (22-89)||(44262489-44262556)
[»] scaffold0654 (1 HSPs)
scaffold0654 (22-83)||(1122-1183)
[»] chr8 (1 HSPs)
chr8 (41-102)||(9782594-9782655)
[»] scaffold0086 (1 HSPs)
scaffold0086 (35-79)||(31220-31264)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 48)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 30060146 - 30059918
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  30060146 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaacaaaattgaaag 30060047  T
Q  101 accagggtatccgaccaaatatttacacacacactattctaattgatggagccttggctttgctatcaaaaatgaaggacaataattgctatccaaatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060046 accagggtatccgaccaaatatttacacacacactattctaattgatggagccttggctttgctatcaaaaatgaaggacaataattgctatccaaatgc 30059947  T
Q  201 tgtgacttacggaataattatacgttctc 229  Q
    |||||||||| ||||||||||||||||||    
T  30059946 tgtgacttacagaataattatacgttctc 30059918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 29835238 - 29835379
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  29835238 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaaattgaaagaccagggt 29835337  T
Q  109 atccgaccaaatatttacacacacactattctaattgatgga 150  Q
    || ||||||||||| |||||| |||||||||| |||||||||    
T  29835338 attcgaccaaatatgtacacatacactattcttattgatgga 29835379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 29887312 - 29887461
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||    
T  29887312 ggtcaaccacctgatataattacttacagttctttattagatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaatttgaaag 29887411  T
Q  101 accagggtatccgaccaaatatttacacacacactattctaattgatgga 150  Q
    |||||||||| ||||||||||| |||||| |||||||||| |||||||||    
T  29887412 accagggtattcgaccaaatatgtacacatacactattcttattgatgga 29887461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 29894576 - 29894717
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  29894576 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaaattgaaagaccagggt 29894675  T
Q  109 atccgaccaaatatttacacacacactattctaattgatgga 150  Q
    || ||||||||||| |||||| |||||||||| |||||||||    
T  29894676 attcgaccaaatatgtacacatacactattcttattgatgga 29894717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 28926531 - 28926382
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||||||||||||||||||| |||| ||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28926531 ggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcattattaacaaaattgaaag 28926432  T
Q  101 accagggtatccgaccaaatatttacacacacactattctaattgatgga 150  Q
    |||||||| | | ||||||||| |||||| |||||||||| ||| |||||    
T  28926431 accagggtcttcaaccaaatatgtacacatacactattcttattaatgga 28926382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 29866672 - 29866813
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  29866672 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttattaacaaatttgaaagaccagggt 29866771  T
Q  109 atccgaccaaatatttacacacacactattctaattgatgga 150  Q
    || ||||||||||| |||||| |||||||||| |||||||||    
T  29866772 attcgaccaaatatgtacacatacactattcttattgatgga 29866813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 24730870 - 24731009
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||| ||||||| |||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  24730870 ggtcaaccacctaatataataacttacaattctatattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcattattaacaaatttgaaag 24730969  T
Q  101 accagggtatccgaccaaatatttacacacacactattct 140  Q
    |||||||||| |||||| |||| |||||| ||||| ||||    
T  24730970 accagggtattcgaccagatatgtacacatacactgttct 24731009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 29073786 - 29073924
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||    
T  29073786 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaacaaaattgaaagaccaaggt 29073885  T
Q  109 atccgaccaaatatttacacacacactattctaattgat 147  Q
    || ||||||| |||  ||||| |||||||||| ||||||    
T  29073886 attcgaccaactatgcacacatacactattcttattgat 29073924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 29078550 - 29078688
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||    
T  29078550 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaacaaaattgaaagaccaaggt 29078649  T
Q  109 atccgaccaaatatttacacacacactattctaattgat 147  Q
    || ||||||| |||  ||||| |||||||||| ||||||    
T  29078650 attcgaccaactatgcacacatacactattcttattgat 29078688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 29106359 - 29106497
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||    
T  29106359 acctgatataattacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcattattaacaaaattgaaagaccaaggt 29106458  T
Q  109 atccgaccaaatatttacacacacactattctaattgat 147  Q
    || ||||||| |||  ||||| |||||||||| ||||||    
T  29106459 attcgaccaactatgcacacatacactattcttattgat 29106497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 24263733 - 24263587
Alignment:
Q  4 caactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagacc 103  Q
    |||| |||||||||||| || |||| |||||||||  |||| ||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||    
T  24263733 caacaacctgatataatcacgtacagttctatattggatgccttatgcaaaaaccatctggttgacaaggcaattgcattattaataaaattgaaagacc 24263634  T
Q  104 agggtatccgaccaaatatttacacacacactattctaattgatgga 150  Q
    ||||||| ||||||||||| |||||| |||||||||| |||||||||    
T  24263633 agggtattcgaccaaatatgtacacatacactattcttattgatgga 24263587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 30061979 - 30061830
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||| |||||||||||||||||||||||||  ||||||||||||||  ||||||| |||||||||||||  |||||||| ||||||||||||    
T  30061979 ggtcaaccacctaatataattacttacaattctatattggatgctttatgcaaacgccatcatcttgacaaggcaatcacattattatcaaaattgaaag 30061880  T
Q  101 accagggtatccgaccaaatatttacacacacactattctaattgatgga 150  Q
    | |||||||| | ||| |||||||||||| ||||||||||||||| ||||    
T  30061879 atcagggtattcaaccgaatatttacacatacactattctaattggtgga 30061830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 24890222 - 24890091
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||| ||||| ||||||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  24890222 acctaatatagttacttacagttctatattggatgctttatgcaaaaaccatcatgttgacaaggcaattgcattattaacaaatttgaaagaccagggt 24890123  T
Q  109 atccgaccaaatatttacacacacactattct 140  Q
    || |||||| |||| |||||| |||| |||||    
T  24890122 attcgaccagatatgtacacatacaccattct 24890091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 29211377 - 29211228
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||| ||||| ||||||||| |||||||||  ||||||||||||||| |||||   ||||||||||| ||||||||||||||||||||||||    
T  29211377 ggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaacccatcgggttgacaaggcagttgcattattaacaaaattgaaag 29211278  T
Q  101 accagggtatccgaccaaatatttacacacacactattctaattgatgga 150  Q
    |||| ||||| |||||||||||  ||||| |||||||||| |||||||||    
T  29211277 accaaggtattcgaccaaatatgcacacatacactattcttattgatgga 29211228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 29882453 - 29882589
Alignment:
Q  4 caactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagacc 103  Q
    |||| ||||||||||||||| ||||||||||||||  |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||    
T  29882453 caacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgttgacaaagcaattgcattattaacaaaattgaaaggcc 29882552  T
Q  104 agggtatccgaccaaatatttacacacacactattct 140  Q
    | ||||| |||||| ||||  ||||| ||||||||||    
T  29882553 aaggtattcgaccagatatgaacacatacactattct 29882589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 29909609 - 29909745
Alignment:
Q  4 caactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagacc 103  Q
    |||| ||||||||||||||| ||||||||||||||  |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||    
T  29909609 caacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgttgacaaagcaattgcattattaacaaaattgaaaggcc 29909708  T
Q  104 agggtatccgaccaaatatttacacacacactattct 140  Q
    | ||||| |||||| ||||  ||||| ||||||||||    
T  29909709 aaggtattcgaccagatatgaacacatacactattct 29909745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 24886541 - 24886413
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaa-ggcaattgcattattaacaaaattgaaagaccaggg 107  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||    
T  24886541 acctgatataattacttacaattctatattggatgctttatg-aaaaaccatcatgt-gacaaaggcaattgcattattaacaaaattgaaagaccaggg 24886444  T
Q  108 tatccgaccaaatatttacacacacactatt 138  Q
    ||| |||||| |||| |||||| ||||||||    
T  24886443 tattcgaccagatatgtacacatacactatt 24886413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 29905662 - 29905803
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||||| ||||  |||||||||||||  |||||||||||||||||||||||| ||||    
T  29905662 acctgatataattacttagagttctatattggatgctttatgcaaaaactatcaggttgacaaggcaatcacattattaacaaaattgaaagacctgggt 29905761  T
Q  109 atccgaccaaatatttacacacacactattctaattgatgga 150  Q
    || | ||||||||| |||||| |||| ||||| |||||||||    
T  29905762 attcaaccaaatatgtacacatacaccattcttattgatgga 29905803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 30127039 - 30126890
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||||  ||||||| ||||||||||| ||||| ||||| |||     
T  30127039 ggtcaaccacctgatataattatttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaagcaattgcattgttaacgaaatttaaaa 30126940  T
Q  101 accagggtatccgaccaaatatttacacacacactattctaattgatgga 150  Q
    |||||||||| | ||||| | | |||||| |||||||||| |||||||||    
T  30126939 accagggtattcaaccaagtgtgtacacatacactattcttattgatgga 30126890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 29903264 - 29903400
Alignment:
Q  4 caactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagacc 103  Q
    |||| ||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||  || ||| |||||||| ||||||||||||||||||||||    
T  29903264 caacaacctgatataattacctacaattctatattggatgctttatgcaaaaaacatcatgctggcaaagcaattgcgttattaacaaaattgaaagacc 29903363  T
Q  104 agggtatccgaccaaatatttacacacacactattct 140  Q
    ||||||| |||||||||||  ||||| |||| |||||    
T  29903364 agggtattcgaccaaatatgaacacatacaccattct 29903400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 30118717 - 30118576
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||||||||||||||||| | |||||||||  ||||||||||||||||| ||||  |||||||||||||  |||||||||||||||||||||||| |||     
T  30118717 acctgatataattacttagagttctatattggatgctttatgcaaaaactatcaggttgacaaggcaatcacattattaacaaaattgaaagacctggga 30118618  T
Q  109 atccgaccaaatatttacacacacactattctaattgatgga 150  Q
    || | ||||||||| |||||| |||| ||||| |||||||||    
T  30118617 attcaaccaaatatgtacacatacaccattcttattgatgga 30118576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 29929296 - 29929433
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||| ||||| ||||| ||||||||||||    
T  29929296 acctaatatagttacttacaattctatattagatgctttatgcaaaacccatcaggttgacaaagcaattgcattgttaacgaaattcaaagaccagggt 29929395  T
Q  109 atccgaccaaatatttacacacacactattctaattga 146  Q
    || | ||||| | | |||||| |||||||||| |||||    
T  29929396 attcaaccaagtgtgtacacatacactattcttattga 29929433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 29116296 - 29116415
Alignment:
Q  21 tacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaat 120  Q
    ||||||||||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||| ||||| |||||||||||| ||||||| | |||||||    
T  29116296 tacttacaattctatattagatgctttatgcaaaatccatcaagttgacaaagcaattgcattgttaacgaaattgaaagacaagggtattcaaccaaat 29116395  T
Q  121 atttacacacacactattct 140  Q
    || |||||| ||| ||||||    
T  29116396 atgtacacatacagtattct 29116415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 29357963 - 29357824
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||| ||||| ||||||||| |||||||||  ||||||||||||||||||||||  ||||||| |||||||| ||||||||| |  |||||     
T  29357963 ggtcaaccacctaatatagttacttacagttctatattggatgctttatgcaaaaaccatcaggttgacaatgcaattgcgttattaacacagatgaaaa 29357864  T
Q  101 accagggtatccgaccaaatatttacacacacactattct 140  Q
    |||||||||| | ||||||||| |||||| ||||||||||    
T  29357863 accagggtattcaaccaaatatgtacacatacactattct 29357824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 29085041 - 29085182
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||| ||||| ||||||||||||||||| || ||||||||| ||||| ||||||  ||||||| |||||||||||  |||| ||||| ||||||||||||    
T  29085041 acctaatatacttacttacaattctataatagatgctttattcaaaacccatcaagttgacaaagcaattgcattgataacgaaatttaaagaccagggt 29085140  T
Q  109 atccgaccaaatatttacacacacactattctaattgatgga 150  Q
    || | |||||  || |||||| |||||||||| |||||||||    
T  29085141 attcaaccaagcatgtacacatacactattcttattgatgga 29085182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 29348571 - 29348433
Alignment:
Q  12 tgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggtatc 111  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||| || ||||| ||  |||||||  | || ||     
T  29348571 tgataaaattacttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttgttaacgaagatgaaagatgaaggaatt 29348472  T
Q  112 cgaccaaatatttacacacacactattctaattgatgga 150  Q
    | |||| |||| |||||| |||||||||| |||||||||    
T  29348471 caaccagatatgtacacatacactattcttattgatgga 29348433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 29889753 - 29889894
Alignment:
Q  9 acctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    |||| ||||| | |||||||||||||||||| ||||||||||||||| ||||||  |||||||  |||||||||| | ||| ||||| ||||||||| ||    
T  29889753 acctaatatagtcacttacaattctatattagatgctttatgcaaaacccatcaggttgacaaaacaattgcattgtcaacgaaatttaaagaccagagt 29889852  T
Q  109 atccgaccaaatatttacacacacactattctaattgatgga 150  Q
    || | ||||||| | || ||| |||||||||| |||||||||    
T  29889853 attcaaccaaatgtgtaaacatacactattcttattgatgga 29889894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 29099378 - 29099465
Alignment:
Q  21 tacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggt 108  Q
    ||||||||||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||| ||||| ||||| |||||| |||||    
T  29099378 tacttacaattctatattagatgctttatgcaaaacccatcaagttgacaaagcaattgcattgttaacgaaatttaaagacaagggt 29099465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 29946452 - 29946579
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||| |||||||||||||||| ||||||||  ||| ||||||||| ||| || || ||||||||||||||| ||| ||||||||| | ||||    
T  29946452 ggtcaaccacctaatataattacttacaactctatattggatgttttatgcaagaactatgatgttgacaaggcaattgtatttttaacaaaacttaaag 29946551  T
Q  101 accagggtatccgaccaaatatttacac 128  Q
    |||||| ||| | ||||| ||| |||||    
T  29946552 accaggatattcaaccaagtatgtacac 29946579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 29366394 - 29366317
Alignment:
Q  12 tgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaac 89  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||| || |||||    
T  29366394 tgataaaattacttacaattctatattggatgctttatgcaaaaaccatcaggttgacaaggcaattgcgttgttaac 29366317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29898092 - 29898168
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaat 77  Q
    ||||||| |||| |||||||||| |||| ||||||||| |||||||||||||||||||||||  |||||||||||||    
T  29898092 ggtcaaccacctaatataattacgtacagttctatattgaatgctttatgcaaaaaccatcaggttgacaaggcaat 29898168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 29949860 - 29949732
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaata 121  Q
    |||||||||||| ||||| ||||||||||||||||||||||  |||||||||| ||||||||||||| |||  | |||||||| || || |  |||||||    
T  29949860 acttacaattctttattagatgctttatgcaaaaaccatcaggttgacaaggcgattgcattattaaaaaagataaaagaccaaggaattcagccaaata 29949761  T
Q  122 tttacacacacactattctaattgatgga 150  Q
    | || ||| ||||||| ||  ||||||||    
T  29949760 tgtatacatacactatacttgttgatgga 29949732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 29876843 - 29876932
Alignment:
Q  4 caactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaa 93  Q
    |||| |||| |||||||||||||||||||||||||  |||||||||||||||  |||||| |||| ||| | ||||||||||||| ||||    
T  29876843 caaccacctaatataattacttacaattctatattgtatgctttatgcaaaattcatcatgttgagaagacgattgcattattaagaaaa 29876932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 30999922 - 30999838
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattat 85  Q
    ||||||| |||| ||||| ||| ||||| |||||||||  ||||||||||||||||||||| | ||||| |||||||||||||||    
T  30999922 ggtcaaccacctaatatagttatttacagttctatattggatgctttatgcaaaaaccatcgtgttgaccaggcaattgcattat 30999838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 16702123 - 16702057
Alignment:
Q  17 taattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatt 83  Q
    |||| |||||||||||  ||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  16702123 taatcacttacaattccttattacatgctttatgtaaaaaccatcatgttgacaaggcaattgcatt 16702057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 24271928 - 24271853
Alignment:
Q  4 caactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattg 79  Q
    |||| |||||||||||| || |||| |||||||||  ||| ||||||||||||||||||  |||||||||||||||    
T  24271928 caacaacctgatataatcacgtacagttctatattggatgatttatgcaaaaaccatcaggttgacaaggcaattg 24271853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 29953657 - 29953542
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaata 121  Q
    |||||||||||| ||||  ||||||| ||||||||||||||  |||||||||| |||||||||||||  ||  |||||||||| || || |  |||||||    
T  29953657 acttacaattctttattggatgctttgtgcaaaaaccatcaggttgacaaggcgattgcattattaaagaagatgaaagaccaagggattcagccaaata 29953558  T
Q  122 tttacacacacactat 137  Q
    | || ||| |||||||    
T  29953557 tgtatacatacactat 29953542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 24271857 - 24271799
Alignment:
Q  92 aattgaaagaccagggtatccgaccaaatatttacacacacactattctaattgatgga 150  Q
    ||||||||||||||||||| ||||||||||| | |||| |||||||||| |||||||||    
T  24271857 aattgaaagaccagggtattcgaccaaatatgttcacatacactattcttattgatgga 24271799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 30061705 - 30061617
Alignment:
Q  143 ttgatggagccttggctttgctatcaaaaatgaag---gacaataattgctatccaaatgctgtgacttacggaataattatacgttct 228  Q
    |||||| |||||||||| ||||||||||||||| |   |||||||||||| ||||||||||||  ||| ||| |||||||||| |||||    
T  30061705 ttgatgaagccttggctatgctatcaaaaatgacgacggacaataattgcaatccaaatgctgcaactaacgaaataattatatgttct 30061617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 30053442 - 30053543
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| | || ||||||| |||||||||||| ||||| |||  || ||||||||||||||  |||||||||||||||| || ||||| ||  ||||||    
T  30053442 ggtcaaccagctaatataatcacttacaattctttattatatggattgtgcaaaaaccatcaggttgacaaggcaattgcgttgttaacgaagatgaaag 30053541  T
Q  101 ac 102  Q
    ||    
T  30053542 ac 30053543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 29912051 - 29912126
Alignment:
Q  65 ttgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 140  Q
    ||||||| |||||| ||||||||||||||||||||| ||| ||||| |||||| ||||  ||||| |||| |||||    
T  29912051 ttgacaaagcaattacattattaacaaaattgaaaggccaaggtattcgaccagatatgaacacatacaccattct 29912126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 29914071 - 29914146
Alignment:
Q  65 ttgacaaggcaattgcattattaacaaaattgaaagaccagggtatccgaccaaatatttacacacacactattct 140  Q
    ||||||| ||||||||||| ||||| ||||| |||||||||||||| | ||||| | | |||||| ||||||||||    
T  29914071 ttgacaaagcaattgcattgttaacgaaatttaaagaccagggtattcaaccaagtgtgtacacatacactattct 29914146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 30149557 - 30149648
Alignment:
Q  16 ataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagaccaggg 107  Q
    ||||| |||||||||||| ||||  |||  || ||||||||||||||  |||||| ||||||||||||||||| |||  | |||||||||||    
T  30149557 ataatcacttacaattctttatttgatggattgtgcaaaaaccatcaggttgacagggcaattgcattattaaaaaagatcaaagaccaggg 30149648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 15727152 - 15727090
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 84  Q
    |||||||||||  || || ||||||||||||||||||||||  ||||||||||||||| ||||    
T  15727152 acttacaattcgttaatagatgctttatgcaaaaaccatcacgttgacaaggcaattgtatta 15727090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 29835504 - 29835590
Alignment:
Q  143 ttgatggagccttggctttgctatcaaaaatgaaggacaataattgctatccaaatgctgtgacttacggaataattatacgttctc 229  Q
    |||||| ||| ||||||||| | ||||||||||| ||||||| ||||| |||||||||  | ||||| | |||||| || |||||||    
T  29835504 ttgatgaagcattggctttgttgtcaaaaatgaaagacaatagttgctttccaaatgccttaacttatgaaataatcatccgttctc 29835590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 29866938 - 29867024
Alignment:
Q  143 ttgatggagccttggctttgctatcaaaaatgaaggacaataattgctatccaaatgctgtgacttacggaataattatacgttctc 229  Q
    |||||| ||| ||||||||| | ||||||||||| ||||||| ||||| |||||||||  | ||||| | |||||| || |||||||    
T  29866938 ttgatgaagcattggctttgttgtcaaaaatgaaagacaatagttgctttccaaatgccttaacttatgaaataatcatccgttctc 29867024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 29887586 - 29887672
Alignment:
Q  143 ttgatggagccttggctttgctatcaaaaatgaaggacaataattgctatccaaatgctgtgacttacggaataattatacgttctc 229  Q
    |||||| ||| ||||||||| | ||||||||||| ||||||| ||||| |||||||||  | ||||| | |||||| || |||||||    
T  29887586 ttgatgaagcattggctttgttgtcaaaaatgaaagacaatagttgctttccaaatgccttaacttatgaaataatcatccgttctc 29887672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 30135161 - 30135250
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatca-tattgacaaggcaattgcattattaacaaaattgaaagaccagggtat 110  Q
    |||||||||||| ||||  ||||||| ||||||||||||||   |||||||||||||  |||||||||| ||  | |||||||| |||||    
T  30135161 acttacaattctttattggatgctttgtgcaaaaaccatcaggtttgacaaggcaatcacattattaacgaagatcaaagaccaaggtat 30135250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 4152 - 4301
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||||||||||||||||||| |||| ||||  |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  4152 ggtcaaccacctgatataattacttacagttctctattggatgctttatgcaaaaaccatccaggtgacaaggcaattgcattattaacaaaattgaaag 4251  T
Q  101 accagggtatccgaccaaatatttacacacacactattctaattgatgga 150  Q
    |||||||| | | ||||||||| |||||| |||||||||| ||| |||||    
T  4252 accagggtcttcaaccaaatatgtacacatacactattcttattaatgga 4301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 22361 - 22497
Alignment:
Q  4 caactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagacc 103  Q
    |||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||| | ||||| |||||| ||||||||||||||||||||| ||    
T  22361 caacaacctgatataattacttacaattctatattggatgctttatgcaaaaaacatcatgtggacaaagcaattacattattaacaaaattgaaaggcc 22460  T
Q  104 agggtatccgaccaaatatttacacacacactattct 140  Q
    | ||||| |||||| ||||  ||||| |||| |||||    
T  22461 aaggtattcgaccagatatgaacacatacaccattct 22497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 24219219 - 24219116
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| |||| |||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| | ||||    
T  24219219 ggtcaaccacctaatataattacttacaattctttattggatgctttatgcaaaaaccatcatgttgacaaggcaattgaattgttaacaaaacttaaag 24219120  T
Q  101 acca 104  Q
    ||||    
T  24219119 acca 24219116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 33997967 - 33998037
Alignment:
Q  13 gatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatt 83  Q
    |||||||| ||||| |||||| ||||  |||||||||||||||| |||||| | ||| |||||||| ||||    
T  33997967 gatataatcacttataattctttattgcatgctttatgcaaaaatcatcatctcgaccaggcaattacatt 33998037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 16351086 - 16351214
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta-ttaacaaaattgaaagaccagggtatccgaccaaat 120  Q
    |||||||||||| |  || ||| ||| ||||||||||| ||| |||||||||| ||||||||| |||| |||||| ||||| || || || | |||||||    
T  16351086 acttacaattctttgatagatgttttctgcaaaaaccaacatgttgacaaggctattgcattagttaagaaaatt-aaagaacatggcattcaaccaaat 16351184  T
Q  121 atttacacacacactattctaattgatgga 150  Q
    || | |||| ||| ||| || |||||||||    
T  16351185 atgtgcacatacaatatacttattgatgga 16351214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 24226850 - 24226911
Alignment:
Q  16 ataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaat 77  Q
    ||||| |||||||||||| ||||| |||  || ||||||||||||||  |||||||||||||    
T  24226850 ataatcacttacaattctttattagatggattgtgcaaaaaccatcaggttgacaaggcaat 24226911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 15062860 - 15062737
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaag 100  Q
    ||||||| | || |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||| ||||||||||  |||||||||||| | ||||    
T  15062860 ggtcaaccatctaatataattacttacaattctatattagatgctatatgcaaaaacaatcatgttgataaggcaattgtgttattaacaaaaattaaag 15062761  T
Q  101 accagggtatccgaccaaatattt 124  Q
    |  ||||||| | |||| ||||||    
T  15062760 agaagggtattcaaccagatattt 15062737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 3248 - 3331
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 84  Q
    ||||||| | |||||||||| |||||||||||  || || ||||||||||||||||||||||| |||||||||| |||||||||    
T  3248 ggtcaaccagctgatataatcacttacaattcattaatagatgctttatgcaaaaaccatcatgttgacaaggctattgcatta 3331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10130152 - 10130246
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaatt 95  Q
    ||||||| |||| |||||||||||||||||||| |||| |||||||||||| |||| || ||| ||||||| ||||| ||||| |||| ||||||    
T  10130152 ggtcaacaacctaatataattacttacaattctttattgaatgctttatgccaaaatcaccatgttgacaaagcaatcgcattgttaagaaaatt 10130246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 41316274 - 41316358
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatat-taaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 84  Q
    ||||||| ||||||||||   ||||||| |||| ||| || ||||||||||||||| | ||||| |||||||||| |||||||||    
T  41316274 ggtcaaccacctgatatatccacttacagttctttatatagatgctttatgcaaaagcaatcatcttgacaaggctattgcatta 41316358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 41198768 - 41198828
Alignment:
Q  13 gatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaagg 73  Q
    |||||||| | || ||||||  ||||| |||||||||| |||||||||||| |||||||||    
T  41198768 gatataatcagttgcaattccttattacatgctttatgtaaaaaccatcatgttgacaagg 41198828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 3643073 - 3643201
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta-ttaacaaaattgaaagaccagggtatccgaccaaat 120  Q
    |||||||||||| |  || ||| ||||||||||||||||||||||||||| || ||||||||| |||| |||||| ||||||||||| || | ||||| |    
T  3643073 acttacaattctttgatagatgttttatgcaaaaaccatcatattgacaaagctattgcattagttaagaaaatt-aaagaccagggcattcaaccaagt 3643171  T
Q  121 atttacacacacactattctaattgatgga 150  Q
    || |||||| ||| ||| || |||||||||    
T  3643172 atgtacacatacaatatacttattgatgga 3643201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 137389 - 137537
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta-ttaacaaaattgaaa 99  Q
    ||||||| |||||| ||| |||| |||| |||| || || ||||||||||||||||| ||||| ||||||| || ||||||||| | || |||||| |||    
T  137389 ggtcaaccacctgacatatttacctacagttctttaatagatgctttatgcaaaaacaatcatcttgacaaagctattgcattagtcaagaaaatt-aaa 137487  T
Q  100 gaccagggtatccgaccaaatatttacacacacactattctaattgatgg 149  Q
    ||||| || || | ||||||||| |||||| ||| ||| || ||||||||    
T  137488 gaccaaggcattcaaccaaatatgtacacatacaatatacttattgatgg 137537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 104722 - 104652
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaa 71  Q
    ||||||| |||| | ||| ||||||||| |||| || || ||||||||||||||||| ||||| |||||||    
T  104722 ggtcaaccacctaacatatttacttacagttctttaatagatgctttatgcaaaaacaatcatcttgacaa 104652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 121424 - 121382
Alignment:
Q  41 atgctttatgcaaaaaccatcatattgacaaggcaattgcatt 83  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  121424 atgctttatgcaaaaatcatcaagttgacaaggcaattgcatt 121382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 53580 - 53532
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttat 49  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  53580 ggtcaaccacctaatataattacttacaattctatattaaatgctttat 53532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 126086 - 126024
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 84  Q
    |||||||||||  || || |||||||||||||||||||||| ||||||||||| |||||||||    
T  126086 acttacaattccttaatagatgctttatgcaaaaaccatcagattgacaaggctattgcatta 126024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 6211 - 6294
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 84  Q
    ||||||| |||||| |||   |||||||||||| || || |||| |||||||||||||||||| |||||||||| |||| ||||    
T  6211 ggtcaaccacctgacatatgcacttacaattctttaatagatgcattatgcaaaaaccatcatgttgacaaggctattgtatta 6294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 47866 - 47804
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatta 84  Q
    |||||||||||| || ||||| |||||||||||||| ||||  |||||||||| |||||||||    
T  47866 acttacaattctttaataaattctttatgcaaaaactatcaggttgacaaggctattgcatta 47804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 43269 - 43201
Alignment:
Q  1 ggtcaactacctgatataattacttacaattctatattaaatgctttatgcaaaaaccatcatattgac 69  Q
    ||||||| |||||| |||   |||||||||||| || || |||| |||||||||||||||||| |||||    
T  43269 ggtcaacaacctgacatatgcacttacaattctttaatagatgcattatgcaaaaaccatcatgttgac 43201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 44262556 - 44262489
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcattattaac 89  Q
    |||||||||||  ||||  ||||||| ||||||||||||||  |||||||||||||  ||||||||||    
T  44262556 acttacaattccttattggatgctttgtgcaaaaaccatcaggttgacaaggcaatcacattattaac 44262489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 1183 - 1122
Alignment:
Q  22 acttacaattctatattaaatgctttatgcaaaaaccatcatattgacaaggcaattgcatt 83  Q
    |||||||||||  | ||| | |||||||| |||||||||||  |||||||||||||||||||    
T  1183 acttacaattccttcttacacgctttatgtaaaaaccatcaagttgacaaggcaattgcatt 1122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 9782594 - 9782655
Alignment:
Q  41 atgctttatgcaaaaaccatcatattgacaaggcaattgcattattaacaaaattgaaagac 102  Q
    ||||||| ||||||| ||||||  |||||||||||||||| || ||||||||  ||||||||    
T  9782594 atgctttgtgcaaaatccatcaggttgacaaggcaattgcgttgttaacaaagatgaaagac 9782655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 31264 - 31220
Alignment:
Q  35 tattaaatgctttatgcaaaaaccatcatattgacaaggcaattg 79  Q
    ||||| |||||||||| |||||||||||| |||||||||| ||||    
T  31264 tattacatgctttatgtaaaaaccatcatgttgacaaggccattg 31220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University