View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_high_11 (Length: 404)
Name: NF1074_high_11
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 138 - 390
Target Start/End: Complemental strand, 33372908 - 33372657
Alignment:
| Q |
138 |
ttcaatgttacacattctattgttcnnnnnnntgttacacattttaagacaaattataaaaaggataataaatgcatttaaaaatttataaacagtctta |
237 |
Q |
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| T |
33372908 |
ttcaatgttacacattctattgttcaaaaaaatgttac-cattttaagacaaattagaaaaaggataataaatgcatttaaaaatttataaagagtctta |
33372810 |
T |
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| Q |
238 |
tattcaaggataaaatatttattgtaaaatgtcttataatcagtgacgaagaatgtaactattaacccaaattttgatactatcttgtgattcatcgacg |
337 |
Q |
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| T |
33372809 |
tattcaaggataaaatatttattgtaaaatgtcttataattagtgacgaagaatgcaactattaacccaaattttgatactatcttgtgattcatcgacg |
33372710 |
T |
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| Q |
338 |
tacattctaagaaagtatttataaattaacattatcccatgataccacaggtt |
390 |
Q |
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| T |
33372709 |
tacattcgaagaaagtatttataaattaacattatcccatgataccacaggtt |
33372657 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 10456786 - 10456748
Alignment:
| Q |
203 |
taataaatgcatttaaaaatttataaacagtcttatatt |
241 |
Q |
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| T |
10456786 |
taataaatgcatctaaaaatttataaatagtcttatatt |
10456748 |
T |
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