View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1074_high_21 (Length: 257)

Name: NF1074_high_21
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1074_high_21
NF1074_high_21
[»] chr7 (5 HSPs)
chr7 (42-251)||(25090371-25090580)
chr7 (167-251)||(25062595-25062679)
chr7 (169-251)||(25084206-25084288)
chr7 (167-251)||(25071298-25071382)
chr7 (170-246)||(25058388-25058464)
[»] chr1 (2 HSPs)
chr1 (42-127)||(43058609-43058695)
chr1 (42-139)||(27324940-27325037)
[»] scaffold1390 (1 HSPs)
scaffold1390 (95-139)||(1001-1045)
[»] chr8 (1 HSPs)
chr8 (47-139)||(25270047-25270139)
[»] chr3 (1 HSPs)
chr3 (89-139)||(25893008-25893058)
[»] scaffold0778 (1 HSPs)
scaffold0778 (95-127)||(1071-1103)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 25090371 - 25090580
Alignment:
Q  42 gattcgtaatttatactagtattaaactatgtaatttannnnnnnaaagtacctgagttttttagtcaaacttttaatggtccacctaaacaatttttat 141  Q
    ||||||||||||||||||||||||||||||||||||||       |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  25090371 gattcgtaatttatactagtattaaactatgtaatttattttttcaaagcacctgagttttctagtcaaacttttaatggtccatctaaacaatttttat 25090470  T
Q  142 tggcttcacaacatacatacgaggtcatacttacatgaaacaaacatcttcccaatcatctcttttctgaattgcagaccacatatcaatggcctttatt 241  Q
    ||||||| |  |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  25090471 tggcttcgccgcatatatacgagatcatacttacatgaaacaaacatctttccaatcatctcttttctaaattgcagaccacatatcaatgacctttatt 25090570  T
Q  242 ttcatctcac 251  Q
    ||||||||||    
T  25090571 ttcatctcac 25090580  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 25062595 - 25062679
Alignment:
Q  167 catacttacatgaaacaaacatcttcccaatcatctcttttctgaattgcagaccacatatcaatggcctttattttcatctcac 251  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  25062595 catacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcatctcac 25062679  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 25084206 - 25084288
Alignment:
Q  169 tacttacatgaaacaaacatcttcccaatcatctcttttctgaattgcagaccacatatcaatggcctttattttcatctcac 251  Q
    |||||||| |||||||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25084206 tacttacacgaaacaaacatctctccaatcatctattttctgaattgcagaccacaaatcaatggcctttattttcatctcac 25084288  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 25071298 - 25071382
Alignment:
Q  167 catacttacatgaaacaaacatcttcccaatcatctcttttctgaattgcagaccacatatcaatggcctttattttcatctcac 251  Q
    ||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||    
T  25071298 catacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacgtatcaatggccttgattttcatctcac 25071382  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 25058388 - 25058464
Alignment:
Q  170 acttacatgaaacaaacatcttcccaatcatctcttttctgaattgcagaccacatatcaatggcctttattttcat 246  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||||  |||||||| |||||||||||| || |||||    
T  25058388 acttacatgaaacaaacttctttccaatcatctcttctctgaattaaagaccacaaatcaatggccttgatgttcat 25058464  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 43058695 - 43058609
Alignment:
Q  42 gattcgtaatttatactagtattaaactatgtaatttannnnnnn-aaagtacctgagttttttagtcaaacttttaatggtccacc 127  Q
    |||| ||||||||||  |||| ||||||||||||||||        |||||||||||| |||||||||||||||||||||| |||||    
T  43058695 gatttgtaatttatagaagtagtaaactatgtaatttattttttttaaagtacctgagctttttagtcaaacttttaatggcccacc 43058609  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 27324940 - 27325037
Alignment:
Q  42 gattcgtaatttatactagtattaaactatgtaatttannnnnnnaaagtacctgagttttttagtcaaacttttaatggtccacctaaacaattttt 139  Q
    |||||||||||||||  |||| ||||||| ||||||||       || ||||| ||| |||||||||||||||||||||| ||| | |||| ||||||    
T  27324940 gattcgtaatttatagcagtagtaaactacgtaatttatttttctaatgtacccgagatttttagtcaaacttttaatggcccatccaaactattttt 27325037  T

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Target: scaffold1390 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 1001 - 1045
Alignment:
Q  95 tgagttttttagtcaaacttttaatggtccacctaaacaattttt 139  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||    
T  1001 tgagttttttagtcaaagttttgatggtccacccaaacaattttt 1045  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 25270047 - 25270139
Alignment:
Q  47 gtaatttatactagtattaaactatgtaatttannnnnnnaaagtacctgagttttttagtcaaacttttaatggtccacctaaacaattttt 139  Q
    |||||||||| ||||| ||||||||||||||||       |||||||| ||  |||||||||||  ||||||||| ||||| |||| ||||||    
T  25270047 gtaatttatagtagtagtaaactatgtaatttatttttttaaagtacccgacctttttagtcaagtttttaatggcccacccaaactattttt 25270139  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 25893058 - 25893008
Alignment:
Q  89 agtacctgagttttttagtcaaacttttaatggtccacctaaacaattttt 139  Q
    |||||| ||||||||||||||||||||| |||| ||||| ||| |||||||    
T  25893058 agtacccgagttttttagtcaaacttttgatggcccacccaaataattttt 25893008  T

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Target: scaffold0778 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 1103 - 1071
Alignment:
Q  95 tgagttttttagtcaaacttttaatggtccacc 127  Q
    |||||||||||||||||||||| ||||||||||    
T  1103 tgagttttttagtcaaacttttgatggtccacc 1071  T

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