View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_high_24 (Length: 251)
Name: NF1074_high_24
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23366855 - 23367089
Alignment:
| Q |
1 |
ctaacatggcaagtcatgaaggttatgtcaagggtccagctatgtatgttgctactgatgatttggtcatagcacccttgtctccaatttctgcattagg |
100 |
Q |
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| T |
23366855 |
ctaacatggcaagtcatgaaggttatgtcaagggtccagctatgtatgttgctactgatgatttggccatagcacccttgtctccaatttctgcattagg |
23366954 |
T |
|
| Q |
101 |
tttacttaaccgattgaaaactcctcttaaggatttgaaggaaaagtatgtcaccattggcgtcaaggaggtaagaaagagtgatactagctagtagatt |
200 |
Q |
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| T |
23366955 |
tttacttaaccgattgaaaactcctcttaaggatttgaaggaaaagcatgtcaccattggcgtcaaggaggt----aagagtgatactagctagtagatt |
23367050 |
T |
|
| Q |
201 |
tttctttagttcactttttaatgctttgataattgttcat |
240 |
Q |
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| T |
23367051 |
tttctttagttcactttttaatgcttt-ttaattgttcat |
23367089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 22632861 - 22632707
Alignment:
| Q |
23 |
ttatgtcaagggtccagctatgtatgttgctactgatgatttggtca---tagcacccttgtctccaatttctgcattaggtttacttaaccgattgaaa |
119 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||| | ||||||| ||| |||||||||| || || ||||||||||||||| ||||| |
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| T |
22632861 |
ttatgtcaagggtccagctatgtattttgctacagatgatttggttaatgtagcaccattgactccaatttcagctttgggtttacttaaccgactgaaa |
22632762 |
T |
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| Q |
120 |
actcctcttaaggatttgaaggaaaagtatgtcaccattggcgtcaaggaggtaa |
174 |
Q |
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| T |
22632761 |
actcctcttaatgatttgaaggaaaaagttgtcaccattggcaccaaggaggtaa |
22632707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 22626316 - 22626469
Alignment:
| Q |
21 |
ggttatgtcaagggtccagctatgtatgttgctactgatgatttggtcatagcacccttgtctccaatttctgcattaggtttacttaaccgattgaaaa |
120 |
Q |
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|||||||| |||||||||||||||||| | ||||| |||||| |||| |||||||||| ||||||| || || || |||||||||||||| ||||| | |
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| T |
22626316 |
ggttatgttaagggtccagctatgtatttcgctacagatgatctggttgtagcacccttaactccaatctcagctttgggtttacttaaccgtttgaata |
22626415 |
T |
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| Q |
121 |
ctcctcttaaggatttgaaggaaaagtatgtcaccattggcgtcaaggaggtaa |
174 |
Q |
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|||||||||| || ||||||||||| | |||| |||||| |||||||||||| |
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| T |
22626416 |
ctcctcttaatgaattgaaggaaaaagttatcacaattggcatcaaggaggtaa |
22626469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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