View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_high_5 (Length: 487)
Name: NF1074_high_5
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 185 - 367
Target Start/End: Complemental strand, 34870335 - 34870157
Alignment:
| Q |
185 |
tagatcatacaattattgtagttttgttttatctatttagcttaactcgtttgaatttgaatgttactacataagttattgagttagttgttgataaata |
284 |
Q |
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| T |
34870335 |
tagatcatgcaattattgtagttttgttttatctatttagcttaactcgtttgaatttgaatgttaatacataagttattgagtt----gttgataaata |
34870240 |
T |
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| Q |
285 |
gactaataatagaaagttaaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatatacactcttct |
367 |
Q |
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| T |
34870239 |
gactaataatagaaagtttaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatatacactcttct |
34870157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 34870530 - 34870385
Alignment:
| Q |
54 |
ttcacgttttggatttttagggagagaataaacccactaaaatggagaaaatgctgataaataactaaatatataatccaaaaa-------gagtcaaca |
146 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| |
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| T |
34870530 |
ttcacgttttggatttttagagagagaataaacccactaaaatggagaaaatgctgataaataactaaatatataatccaaaaacaatgaggtgttaaca |
34870431 |
T |
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| Q |
147 |
atttaaatccactaattacgaaatgatgaaaatgcccctagatcat |
192 |
Q |
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| T |
34870430 |
atttaaacccactaattacgaaatgatgaaaatgcccctaaatcat |
34870385 |
T |
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