View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_high_6 (Length: 455)
Name: NF1074_high_6
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 23366761 - 23366348
Alignment:
| Q |
13 |
aatattcatgaacacaacgctcaagaattggaaatatttgtttgcttaattttaaaagcgggaagatgcaaggatcaacaatccggttcttggcatcttc |
112 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23366761 |
aatattcatgaacacgacgctcaagaattggaaatatttgtttgcttaattttaaaagcgggaagatgcaaggatcaacaatccggttcttggcatcttc |
23366662 |
T |
|
| Q |
113 |
agatatgaaatatttattctcatttaaatcagctatgctcttgtaaaatcgattaatgctgcccaaagaaattttttctcctaatatacgactaattcct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23366661 |
agatatgaaatatttattctcatttaaatcagctatgctcttgtaaaatcgattaatgctgcccaaataaattttttctcctaatatacgactaattcct |
23366562 |
T |
|
| Q |
213 |
cccaaaggaatagtaagaaagcttaaaagcaagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataactagtttca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23366561 |
cccaaaggaatagtaagaaagcttaaaagcaagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataactagtttca |
23366462 |
T |
|
| Q |
313 |
gattgatttggatattaccaccaatttcaacatcgtacgagaaaaacctggaaacctcaagggatggtttctttcctaaaaagaaatcggtcaaagtaga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23366461 |
gattgatttggatattaccaccaatttcaacatcgtacgagaaaaacctggaaacctcaagggatggtttctttcctaaaaagaaatcggtcaaagtaga |
23366362 |
T |
|
| Q |
413 |
cttcgacaacaaag |
426 |
Q |
| |
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|||||||||||||| |
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|
| T |
23366361 |
cttcgacaacaaag |
23366348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 415
Target Start/End: Original strand, 22633111 - 22633388
Alignment:
| Q |
138 |
aaatcagctatgctcttgtaaaatcgattaatgctgcccaaagaaattttttctcctaatatacgactaattcctcccaaaggaatagtaagaaagctta |
237 |
Q |
| |
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|||||| |||| |||||||| |||| ||| ||||| || || ||| || ||||| ||||| ||| |||||| |||||||||| |||||||| |||| |
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| T |
22633111 |
aaatcaactatactcttgtataatccattcatgcttccaaaggaacaattctctccaaatattcgaacaattccacccaaaggaaatgtaagaaaactta |
22633210 |
T |
|
| Q |
238 |
aaagcaagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataactagtttcagattgatttggatattaccaccaat |
337 |
Q |
| |
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|||| |||| |||||||||||| | ||||||||| |||| | |||| ||| ||||||||||||||||| || ||||||||||||||||| ||| ||| |
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| T |
22633211 |
aaagtaagtttgcaaaatcttgctgtccttgagcatacaataccttgttatctgattttcttataactagctttagattgatttggatattgtcactaat |
22633310 |
T |
|
| Q |
338 |
ttcaacatcgtacgagaaaaacctggaaacctcaagggatggtttctttcctaaaaagaaatcggtcaaagtagactt |
415 |
Q |
| |
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||||||||| || | | |||||| || |||||||||||||||||| ||| || ||||| |||||||| ||||| |
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|
| T |
22633311 |
ttcaacatcacacaaaataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgactt |
22633388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 415
Target Start/End: Complemental strand, 22626059 - 22625782
Alignment:
| Q |
138 |
aaatcagctatgctcttgtaaaatcgattaatgctgcccaaagaaattttttctcctaatatacgactaattcctcccaaaggaatagtaagaaagctta |
237 |
Q |
| |
|
|||||| |||| |||||||| |||| ||| ||||| || || ||| || ||||| ||||| ||| |||||| |||||||||| |||||||| |||| |
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| T |
22626059 |
aaatcaactatactcttgtataatccattcatgcttccaaaggaacaattctctccaaatattcgaacaattccacccaaaggaaatgtaagaaaactta |
22625960 |
T |
|
| Q |
238 |
aaagcaagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataactagtttcagattgatttggatattaccaccaat |
337 |
Q |
| |
|
|||| |||| |||||||||||| | ||||||||| ||| | |||| ||| ||||||||||||||||| || ||||||||||||||||| | | ||| |
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| T |
22625959 |
aaagtaagtttgcaaaatcttgctgtccttgagcatacattaccttgttatctgattttcttataactagctttagattgatttggatattgtctctaat |
22625860 |
T |
|
| Q |
338 |
ttcaacatcgtacgagaaaaacctggaaacctcaagggatggtttctttcctaaaaagaaatcggtcaaagtagactt |
415 |
Q |
| |
|
||||||||| | | | |||||| || |||||||||||||||||| ||| || ||||| |||||||| ||||| |
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|
| T |
22625859 |
ttcaacatcactcaatataaaccttgatctctcaagggatggtttcttctctaggaacaaatctgtcaaagttgactt |
22625782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 23326724 - 23326844
Alignment:
| Q |
210 |
cctcccaaaggaatagtaagaaagcttaaaagcaagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataactagtt |
309 |
Q |
| |
|
||||||||||||| |||||||| | |||||| |||| |||||||| || |||||||||||| |||| | || ||||| ||||||||||||||||||| |
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|
| T |
23326724 |
cctcccaaaggaaatgtaagaaaacataaaagtaagtttgcaaaatattcgtccccttgagcatacaatacttttccatccgattttcttataactagtt |
23326823 |
T |
|
| Q |
310 |
tcagattgatttggatattac |
330 |
Q |
| |
|
||| |||||||| ||||||| |
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|
| T |
23326824 |
tcacattgatttcaatattac |
23326844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 23262571 - 23262666
Alignment:
| Q |
209 |
tcctcccaaaggaatagtaagaaagcttaaaagcaagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataac |
304 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| || | ||||||||||| |||| || || ||||| |||||||| ||||| |
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| T |
23262571 |
tcctcccaaaggaaatgtaagaaaacttaaaagcaagtctgcaaattcacgatccccttgagcgtacaatattttcccatctgattttctaataac |
23262666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 23258635 - 23258704
Alignment:
| Q |
243 |
aagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataactagtttca |
312 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| || |||||||| || |||||||||| ||||||| |
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|
| T |
23258635 |
aagtctgcaaaatcttgtcccccttgagcatacaatatattgccatctgactttcttataaggagtttca |
23258704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 23354724 - 23354788
Alignment:
| Q |
234 |
cttaaaagcaagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttct |
298 |
Q |
| |
|
|||| ||| |||||||||||||||| ||| ||||||||| |||| ||||||||||| |||||||| |
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|
| T |
23354724 |
cttacaagtaagtctgcaaaatctttttctccttgagcatacaatatcttgccatctgattttct |
23354788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 23339678 - 23339781
Alignment:
| Q |
209 |
tcctcccaaaggaatagtaagaaagcttaaaagcaagtctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataactagt |
308 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| |||| ||||||||| | ||||||||| |||||||||| | || ||||||||||||||||| |
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|
| T |
23339678 |
tcctcccaaaggaaatgtgagaaaacttaaaagaaagtttgcaaaatcataactcccttgagcgtacaaaatctttacgtctgattttcttataactagc |
23339777 |
T |
|
| Q |
309 |
ttca |
312 |
Q |
| |
|
|||| |
|
|
| T |
23339778 |
ttca |
23339781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 23250741 - 23250825
Alignment:
| Q |
98 |
gttcttggcatcttcagatatgaaatatttattctcatttaaatcagctatgctcttgtaaaatcgattaatgctgcccaaagaa |
182 |
Q |
| |
|
|||||| ||||| | |||||||||||| | | |||||||||||||||||||||||| | |||| || ||| || ||||||||| |
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|
| T |
23250741 |
gttctttgcatccttagatatgaaatacatttcttcatttaaatcagctatgctcttgcacaatccatcaatacttcccaaagaa |
23250825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 23316379 - 23316439
Alignment:
| Q |
246 |
tctgcaaaatcttgttccccttgagcacacaaaatcttgccatcagattttcttataacta |
306 |
Q |
| |
|
|||||||||||||| ||| | |||||| | || ||||| ||||| |||||||||||||||| |
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|
| T |
23316379 |
tctgcaaaatcttgctccgcgtgagcaaataatatctttccatctgattttcttataacta |
23316439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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