View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1074_high_8 (Length: 425)
Name: NF1074_high_8
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 142 - 415
Target Start/End: Original strand, 5476118 - 5476391
Alignment:
| Q |
142 |
ggtgggacgatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatg |
241 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476118 |
ggtgggatgatggcaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatg |
5476217 |
T |
|
| Q |
242 |
ttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaaga |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476218 |
ttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaaga |
5476317 |
T |
|
| Q |
342 |
ttgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaatacctatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5476318 |
ttgctgtaattggaagggtattgaatgtgacaaccaaactggtcatattctaaagtttgagctcaatacctatg |
5476391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 104 - 384
Target Start/End: Original strand, 5481172 - 5481447
Alignment:
| Q |
104 |
taatcacaaatttgaaaccatctaatatcctctggtggggtgggacgatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcct |
203 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| || |||| ||||||||||||||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
5481172 |
taatcaccaatttgaaaccatctgatatcctctggtgggatg-----atggcaagcacaaaaatcatcagtgtacatattgttattcctctcttcttcct |
5481266 |
T |
|
| Q |
204 |
ttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaat |
303 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
5481267 |
ttttgcatcaactcaatgtgaagttaaaagccttaatgttagcactctttgcattaaggaagagagaatggcactccttaacgtcaaaaaagatctcaat |
5481366 |
T |
|
| Q |
304 |
gatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggt |
384 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||| ||||||| ||| |||| ||||| ||||||||| | ||||||||| |
|
|
| T |
5481367 |
gatccttacaattgcctttcttcatgggttgggaaagattgttgtcgctggattggtatagaatgtgactatcaaactggt |
5481447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 232 - 407
Target Start/End: Original strand, 5484144 - 5484319
Alignment:
| Q |
232 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatggg |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||| | |
|
|
| T |
5484144 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaatagatctcaaagatccatccaattgcctttcttcatgag |
5484243 |
T |
|
| Q |
332 |
tcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
407 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484244 |
ttggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
5484319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 232 - 405
Target Start/End: Original strand, 5489329 - 5489502
Alignment:
| Q |
232 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatggg |
331 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
5489329 |
agccttaatgttagtactctttgcattaaggaagagagagtggcactccttaaaatcaaaaaagatctcaaggatccttcaaattgcctttcttcatggg |
5489428 |
T |
|
| Q |
332 |
tcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctc |
405 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5489429 |
ttggggaagattgttgtaattggaagggtatagaatgtgacaaccaaactggtcatgttcaaaagtttgagctc |
5489502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 182 - 406
Target Start/End: Original strand, 5495061 - 5495285
Alignment:
| Q |
182 |
ttgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactcct |
281 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||| |||| || ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5495061 |
ttgtcatttccctcttctttctttttgcatcaacccaatatgtagtgagtagcaataatgttagcactctttgcattaaggaagagagagtggcactcct |
5495160 |
T |
|
| Q |
282 |
taacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaact |
381 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
5495161 |
taaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatgggtcggggaagattgctgtaattggaagggtatacaatgtaacaaccaaact |
5495260 |
T |
|
| Q |
382 |
ggtcatgttctaaagtttgagctca |
406 |
Q |
| |
|
||||||||| ||||| || |||||| |
|
|
| T |
5495261 |
ggtcatgttttaaagcttaagctca |
5495285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 150 - 374
Target Start/End: Original strand, 5466460 - 5466684
Alignment:
| Q |
150 |
gatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcact |
249 |
Q |
| |
|
||||| |||||||| |||| || ||||| || ||||||| ||||| |||| ||||||||||||||||| |||| ||||| ||||||| ||||||||||| |
|
|
| T |
5466460 |
gatggcaagcacaagaatcgtctttggatattatgttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcact |
5466559 |
T |
|
| Q |
250 |
ctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgta |
349 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||| || ||||| ||| | ||||||||| |
|
|
| T |
5466560 |
ctttgcattaaagaagagagggtggcactccttaacataaaaaaagatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtg |
5466659 |
T |
|
| Q |
350 |
attggaagggtattgaatgtgacaa |
374 |
Q |
| |
|
| |||| ||||| |||||||||| |
|
|
| T |
5466660 |
actggattggtatacaatgtgacaa |
5466684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 386487 - 386385
Alignment:
| Q |
7 |
cttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataa |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386487 |
cttccaaacacatcgagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataa |
386388 |
T |
|
| Q |
107 |
tca |
109 |
Q |
| |
|
||| |
|
|
| T |
386387 |
tca |
386385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 38729055 - 38729157
Alignment:
| Q |
7 |
cttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataa |
106 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38729055 |
cttccaaacacaccgagctcgatttatctgtcccataagaactagataattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataa |
38729154 |
T |
|
| Q |
107 |
tca |
109 |
Q |
| |
|
||| |
|
|
| T |
38729155 |
tca |
38729157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University