View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1074_low_1 (Length: 1023)

Name: NF1074_low_1
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1074_low_1
NF1074_low_1
[»] chr6 (35 HSPs)
chr6 (208-1015)||(1841577-1842381)
chr6 (269-601)||(6465429-6465762)
chr6 (233-523)||(1838732-1839020)
chr6 (332-523)||(1822092-1822280)
chr6 (338-601)||(6526468-6526732)
chr6 (169-442)||(6472698-6472965)
chr6 (286-467)||(6515867-6516048)
chr6 (277-538)||(13035499-13035760)
chr6 (622-826)||(6526143-6526347)
chr6 (286-459)||(6505722-6505895)
chr6 (622-752)||(1831992-1832122)
chr6 (825-956)||(6473462-6473593)
chr6 (728-956)||(1828190-1828440)
chr6 (277-567)||(6520324-6520614)
chr6 (622-821)||(6465112-6465308)
chr6 (286-598)||(6461587-6461900)
chr6 (622-737)||(6473246-6473361)
chr6 (722-818)||(1839191-1839284)
chr6 (508-601)||(6523489-6523583)
chr6 (634-755)||(1827222-1827343)
chr6 (127-451)||(6528446-6528768)
chr6 (910-955)||(1822452-1822497)
chr6 (237-314)||(6526733-6526810)
chr6 (427-507)||(1832542-1832622)
chr6 (622-817)||(6457156-6457348)
chr6 (286-598)||(6496772-6497085)
chr6 (158-238)||(6505937-6506018)
chr6 (897-956)||(6525999-6526058)
chr6 (784-826)||(1827355-1827397)
chr6 (824-908)||(1827411-1827495)
chr6 (967-1007)||(1846961-1847001)
chr6 (166-238)||(6515753-6515825)
chr6 (286-429)||(6457645-6457788)
chr6 (824-942)||(6516525-6516643)
chr6 (955-988)||(1828456-1828489)
[»] chr1 (3 HSPs)
chr1 (269-601)||(35231188-35231515)
chr1 (508-577)||(35243061-35243130)
chr1 (907-956)||(35244497-35244546)


Alignment Details
Target: chr6 (Bit Score: 754; Significance: 0; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 208 - 1015
Target Start/End: Original strand, 1841577 - 1842381
Alignment:
208 taacaatgttggcacatcctcttcatcttcatctccagcttttgtataagaaagattgttgtgttaccgttttgagttattttaagtataaaagcattta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
1841577 taacaatgttggcacatcctcttcatcttcatctccagcttttgtataagaaagattgttgtgttactgttttgagttattttaagtataaaagcattta 1841676  T
308 tgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccataacttggcattcaagcaaaggtgtaaaagaagaatttcat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
1841677 tgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgcttccataacttggcattcaagcaaaggtgtaaaagaagaatttcat 1841776  T
408 gatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctaggg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1841777 gatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctaggg 1841876  T
508 ttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaaaaaccattgagcattggcttagcaga 607  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||    
1841877 ttgcatggtcggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaaaaaacatcgagcattggcttagcgga 1841976  T
608 acttaaatgaccaatatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtgga 707  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1841977 acttaaatgatcaatatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtgga 1842076  T
708 ttcactcatgaaggattttatgaccttgagtagaaattcaaactctaataatgacacgtgtctaaggtgtttcgatctttgtaaattacactcttgagct 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
1842077 ttcactcatgaaggattttatgaccttgagtagaaattcaaactc---taatgacacgtgtctaaggtgtttcgatctttgtaaattacactcttgagct 1842173  T
808 ggagggctaactgaattcaagagagcactagcgaagtcgtgaatgcatactattctgcagccttgattggtataatataagaagatgttgaacttgcagc 907  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
1842174 ggagggctaactgaattcaagagagcactagcgaagtcgtgaatgcatactattctgcagccttgattcgtataatataagaagatgttgaacttgcagc 1842273  T
908 cattgcatcaacacttacatcattggaaattcttgctgctaaaatgtggaggaaatatttatgagaaagagtttactaaaaataataaggttattagtgt 1007  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
1842274 cattgcatcaacacttacatcattggaaattcttgctgcaaaaatgtggaggaaatatgtatgagaaagagtttactaaaaataataaggttattagtgt 1842373  T
1008 tctgtggt 1015  Q
    ||||||||    
1842374 tctgtggt 1842381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 269 - 601
Target Start/End: Complemental strand, 6465762 - 6465429
Alignment:
269 tgttaccgttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccata 368  Q
    |||||| ||||||| | |||||||||||| ||| ||| |||  || |||||   ||||||||||||||||||| | |||||||||||||  |||||  ||    
6465762 tgttactgttttgaatgattttaagtatagaagtattgatggtgatcttgttggtgttgttggtgattcatggttgttgaaaaccgatccggtttctgta 6465663  T
369 acttggcattcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaa 468  Q
    ||||||||||| |  || ||||| |||||||||| ||||||||| |||||||| | |||||||||| |||||||||||||||| || |||| |||| | |    
6465662 acttggcattctactaagggtgttaaagaagaatctcatgatgagattgtttccgttcttttgaaagatgttgaaggtttgaattcgtctgcaatagcga 6465563  T
469 gaaattcttcttacttttatggtaaatctattgctagggttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttag 568  Q
      ||||| |||||||||||||| || |  |||||||||| |||  ||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||    
6465562 cgaattcgtcttacttttatggcaagttgattgctagggctgctaggttggctttgattgctgaagaggtttgtttccttgatgtgattccgaaaattag 6465463  T
569 aaagtattttaa-aaaaccattgagcattggctt 601  Q
     |||| ||| ||  |||| ||||||| |||||||    
6465462 gaagtttttgaaggaaactattgagccttggctt 6465429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 233 - 523
Target Start/End: Original strand, 1838732 - 1839020
Alignment:
233 tcttcatctccagcttttgtataagaaagattgttgtgttaccgttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggt 332  Q
    ||||||||| |||||||||| |||||||||||||  | | |  |||||||||||||| |||||||||||| || ||  ||||| ||||  || |||||||    
1838732 tcttcatcttcagcttttgtctaagaaagattgtaat-tcagtgttttgagttatttcaagtataaaagctttgatcgagagcctgtcggtgctgttggt 1838830  T
333 gattcatggattttgaaaaccgatcatgtttccataacttggcattcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttga 432  Q
     |||||||||||||||||||||||||||||||  || ||||||||||||| ||  ||||||| ||||||| | |||||||||||||||||||||| ||||    
1838831 -attcatggattttgaaaaccgatcatgtttctgtatcttggcattcaagaaattgtgtaaatgaagaatctaatgatgaaattgtttcagctctcttga 1838929  T
433 aatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctagggttgcatggttggcatt 523  Q
    || ||||||||   |||||||||| || ||||| |  ||||||||| ||||||||||||||||  ||||| |||| |||| ||||||||||    
1838930 aagatgttgaataattgaactcatttgcaataatatcaaattcttcatacttttatggtaaattgattgccagggctgcaaggttggcatt 1839020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 332 - 523
Target Start/End: Original strand, 1822092 - 1822280
Alignment:
332 tgattcatggattttgaaaaccgatcatgtttccataacttggcattcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttg 431  Q
    |||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||| |||||| ||||||   ||||||||||||| |||||    
1822092 tgattcatggcttttgaaaatcgatcctgtttccgtaacttggcattcaagcaaaggtgttaaacaagaatctcatga---aattgtttcagctattttg 1822188  T
432 aaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctagggttgcatggttggcatt 523  Q
    ||| ||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||  ||||| |||| |||| ||||||||||    
1822189 aaagatgttgaaggtatgaactcatctgcaataacaacaaattcttcttacttttatagtaaattgattgccagggctgcaaggttggcatt 1822280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 338 - 601
Target Start/End: Complemental strand, 6526732 - 6526468
Alignment:
338 atggattttgaaaaccgatcatgtttccataacttggcattcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatat 437  Q
    ||||||||||||||| |||| ||||||  ||||||||||||||||||||||||| | ||| | ||| | |||||||||||||||||| ||||  ||  ||    
6526732 atggattttgaaaacagatcttgtttctgtaacttggcattcaagcaaaggtgtgagagatggattgcgtgatgaaattgtttcagcactttgtaaggat 6526633  T
438 gttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctagggttgcatggttggcattgatagctgaagagg 537  Q
    ||||||||  |||| |||||   ||||| || ||| || ||||| |||||||| ||||  ||||| || | |||| |  | ||||||||||| |||||||    
6526632 gttgaaggactgaattcatcaacaataaaaacaaaatcatcttatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagagg 6526533  T
538 tttgtttccttgatgtgattccaaaagttagaaagtattttaa-aaaaccattgagcattggctt 601  Q
    |||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||    
6526532 tttgtttccttgatgtgattccaaaagttagaaagtatttgaaggaaaccattgagccttggctt 6526468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 169 - 442
Target Start/End: Original strand, 6472698 - 6472965
Alignment:
169 gtgttgagtataagtttgagaagcaagtttcaggtgatttaacaatgttggcacatcctcttcatcttcatctccagcttttgtataagaaagattgttg 268  Q
    ||||||||||||||||||||||| ||| |||||||||||||   ||||| ||||| |||||||||||      ||||||| ||| ||| |  ||||        
6472698 gtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctcttcatct------ccagcttatgtctaaaagtgattccaa 6472791  T
269 tgttaccgttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccata 368  Q
    || |||| |||||||  |||||||||||||||||||| |||  || |||||    |||||||||||||||||| |||||||||| |||| |||||| ||     
6472792 tgctacctttttgagggattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctatt 6472891  T
369 acttggcattcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttga 442  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||  ||| |||||||    
6472892 acttggcattcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttcagctctttcaaaagatgttga 6472965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 286 - 467
Target Start/End: Original strand, 6515867 - 6516048
Alignment:
286 attttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccataacttggcattcaagcaa 385  Q
    |||| |||||| |||||||| ||| ||| |||||   |||||||||||||||||||||||||||||||||||   ||||  |||||||||||||||||||    
6515867 atttcaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggattttgaaaaccgatccgatttctgtaacttggcattcaagcaa 6515966  T
386 aggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataaca 467  Q
    |||| ||||||||||||  |||||||||||||||||  | ||||| ||| ||||||||||||| || ||||| | |||||||    
6515967 aggtataaaagaagaatcacatgatgaaattgtttcgtcgcttttaaaagatgttgaaggtttaaattcatcagcaataaca 6516048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 277 - 538
Target Start/End: Original strand, 13035499 - 13035760
Alignment:
277 ttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccataacttggca 376  Q
    |||| ||| ||| |||||||||||||||| |||  || |||||    |||||||||||||||||| ||||||||||||||  ||||||  ||||||||||    
13035499 tttttagtgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgattctgtttctgtaacttggca 13035598  T
377 ttcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattct 476  Q
    | ||||||||||||||||||||||||  |||||  |||||||||||||||||| |||| ||||||||||| | || |||||    |||||||  |  ||     
13035599 tacaagcaaaggtgtaaaagaagaatcacatgacaaaattgtttcagctctttcgaaagatgttgaaggtctaaagtcatcaccgataacaacgacatca 13035698  T
477 tcttacttttatggtaaatctattgctagggttgcatggttggcattgatagctgaagaggt 538  Q
    |||||||||||||| ||||  || || || | |||| |||| ||||||||| ||||||||||    
13035699 tcttacttttatggaaaattgatagcaagagctgcaaggttagcattgataactgaagaggt 13035760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 622 - 826
Target Start/End: Complemental strand, 6526347 - 6526143
Alignment:
622 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcatgaagg 721  Q
    ||||||||| | ||||||||||||||||||||| ||| ||||||||||||||| ||||||| || ||||||| || ||||||   ||||  |||||   |    
6526347 tatcatttaggatactttctctatggaattgcagtgcttgctaagattgatcctatttggggtagaaagtataagtctcaagcctattctgtcatggctg 6526248  T
722 attttatgaccttgagtagaaattcaaactctaataatgacacgtgtctaaggtgtttcgatctttgtaaattacactcttgagctggagggctaactga 821  Q
    |||||||||   |||| |||||||||||| ||| | || |||||  |||||||||||||||||| | ||||||||||||||| |||||||||||||| ||    
6526247 attttatgaatctgagcagaaattcaaaccctagttattacacgcatctaaggtgtttcgatctgtataaattacactcttgggctggagggctaacaga 6526148  T
822 attca 826  Q
    |||||    
6526147 attca 6526143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 286 - 459
Target Start/End: Complemental strand, 6505895 - 6505722
Alignment:
286 attttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccataacttggcattcaagcaa 385  Q
    |||| ||||||| ||||||| |||  || |||||   |||||||||||||||||||||||||||||| || | ||||||||| |||||||| ||||||||    
6505895 atttcaagtatacaagcattgatggtgaccttgttggtgttgttggtgattcatggattttgaaaacagaacctgtttccatgacttggcactcaagcaa 6505796  T
386 aggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctg 459  Q
    |||||||||||| ||||  |   |||||||||||||| | ||||  ||| ||||||||||||| ||||||||||    
6505795 aggtgtaaaagacgaatcacgcaatgaaattgtttcatcactttctaaagatgttgaaggtttaaactcatctg 6505722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 622 - 752
Target Start/End: Original strand, 1831992 - 1832122
Alignment:
622 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcatgaagg 721  Q
    ||||||||| | |||||||||| |||||||||| ||| ||| ||||||||||||||||||| || | ||||| || ||||||   ||||||||||  |||    
1831992 tatcatttaggatactttctctttggaattgcagtgcttgcaaagattgatccaatttggggtagagagtataagcctcaagcctattcactcattgagg 1832091  T
722 attttatgaccttgagtagaaattcaaactc 752  Q
    |||||||||||||||||||||||||||||||    
1832092 attttatgaccttgagtagaaattcaaactc 1832122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 825 - 956
Target Start/End: Original strand, 6473462 - 6473593
Alignment:
825 caagagagcactagcgaagtcgtgaatgcatactattctgcagccttgattggtataatataagaagatgttgaacttgcagccattgcatcaacactta 924  Q
    |||||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||   |||  | ||||  |||||  |||| | |||||| |||||||    
6473462 caagagagtactagtgaagccgtgaatgcatactattctgcagcgttgatcggtatggcatataacgatgcagaactcacagcgaatgcatcgacactta 6473561  T
925 catcattggaaattcttgctgctaaaatgtgg 956  Q
    ||||||||||||||||||||||||||||||||    
6473562 catcattggaaattcttgctgctaaaatgtgg 6473593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 728 - 956
Target Start/End: Original strand, 1828190 - 1828440
Alignment:
728 tgaccttgagtagaaattcaaactctaataatgacacgtgtctaaggtgtttcgatctttgtaaattacactcttgagctggagggctaactgaat---- 823  Q
    |||||||||||||||| || |||   |||||| |||||||||| |||||||||||||||| ||||||||||||||| || ||||||||||| ||||        
1828190 tgaccttgagtagaaactctaac---aataattacacgtgtctgaggtgtttcgatctttataaattacactcttgggccggagggctaacagaattcgc 1828286  T
824 ------------tcaagagagcactagcgaagtcgtgaatgcatactattctgcagccttgattgg---------tataatataagaagatgttgaactt 902  Q
                ||||||||||||||| || |  ||||||||||||||||| ||||||||||||||         |||  |||| |||||||  ||| |     
1828287 tgatggtagaaatcaagagagcactagtgatgcagtgaatgcatactattccgcagccttgattggtatggttactatggtatatgaagatgcggaattc 1828386  T
903 gcagccattgcatcaacacttacatcattggaaattcttgctgctaaaatgtgg 956  Q
    |||||| |||||||||||||| | ||||||||| ||||||||||||||||||||    
1828387 gcagccgttgcatcaacacttgcgtcattggaagttcttgctgctaaaatgtgg 1828440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 277 - 567
Target Start/End: Original strand, 6520324 - 6520614
Alignment:
277 ttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccataacttggca 376  Q
    |||||||| |||||||||||||||||||| ||| ||| |||||   |||  |||||||||||||| |||||||||| |||| ||||||  ||||||||||    
6520324 ttttgagtgattttaagtataaaagcattgatggagaccttgttggtgtcattggtgattcatggtttttgaaaactgatcctgtttctgtaacttggca 6520423  T
377 ttcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattct 476  Q
    |||    || ||||| ||  ||||||  ||| | |||||||||||||| ||||||||| ||||||| | | | || ||||| || ||| ||| ||  ||     
6520424 ttcttcaaatggtgttaagaaagaataccataaagaaattgtttcagcacttttgaaagatgttgaggatctaaattcatcagatatatcaacaacatcg 6520523  T
477 tcttacttttatggtaaatctattgctagggttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagtta 567  Q
    ||||| | |||||| || |  |||||||| | |||| |||| ||| | ||||||||||||||||   || ||||| |||||||||| ||||    
6520524 tcttattcttatggaaagttgattgctagagctgcaaggttagcaataatagctgaagaggttttcgtctttgatttgattccaaaggtta 6520614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 622 - 821
Target Start/End: Complemental strand, 6465308 - 6465112
Alignment:
622 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcatgaagg 721  Q
    ||||||||| | ||||||||||||||||||||  ||| ||| ||||||||||||||||||| ||  |||||| || ||||||   |||||||||||   |    
6465308 tatcatttaggatactttctctatggaattgctgtgcttgcaaagattgatccaatttggggtaggaagtataagcctcaagcttattcactcatggctg 6465209  T
722 attttatgaccttgagtagaaattcaaactctaataatgacacgtgtctaaggtgtttcgatctttgtaaattacactcttgagctggagggctaactga 821  Q
    ||||||||| |||||| |||||| | |||||    ||| ||||  ||||||||||||||||||||| |||||| || || || || |||||| |||||||    
6465208 attttatgaacttgagcagaaatccgaactc---gaattacacccgtctaaggtgtttcgatctttttaaattgcattcgtgggccggagggttaactga 6465112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 286 - 598
Target Start/End: Original strand, 6461587 - 6461900
Alignment:
286 attttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccataacttggcattcaagcaa 385  Q
    ||||||||||| |||||||| ||| ||| |||||   ||||||||||||||||||| ||||| |||| |||| ||||    | || |||| |||||  ||    
6461587 attttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgttgatgttacatggctttcaacgaa 6461686  T
386 aggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttt 485  Q
     ||||| ||  |||||| || ||||||||| |||||| | ||||| ||| ||||||| ||| |  | |||||  ||||||| | |||   |||||||| |    
6461687 tggtgtgaagaaagaatctcgtgatgaaatcgtttcatcacttttaaaagatgttgagggtctagattcatcaaaaataaccacaaaagattcttactct 6461786  T
486 tatggtaaatctattgctagggttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaa-aaa 584  Q
    ||||||||||  ||||  ||||  ||  |||| |||||||||||||||||||||| || | | |||||||||||||| ||||  |||| ||| ||| |||    
6461787 tatggtaaattgattggaagggcggcgaggtttgcattgatagctgaagaggtttcttacttagatgtgattccaaaggttaagaagtttttaaaagaaa 6461886  T
585 ccattgagcattgg 598  Q
    ||||||||| ||||    
6461887 ccattgagccttgg 6461900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 622 - 737
Target Start/End: Original strand, 6473246 - 6473361
Alignment:
622 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcatgaagg 721  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||  || ||| || ||||||   || |||||||| | |    
6473246 tatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggggtaagaaatataagcctcaagcctatgcactcatggaag 6473345  T
722 attttatgaccttgag 737  Q
    ||||||||||||||||    
6473346 attttatgaccttgag 6473361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 722 - 818
Target Start/End: Original strand, 1839191 - 1839284
Alignment:
722 attttatgaccttgagtagaaattcaaactctaataatgacacgtgtctaaggtgtttcgatctttgtaaattacactcttgagctggagggctaac 818  Q
    ||||||||||||  ||||||||||| ||||||||| |   || ||||||||||||||| ||||||| ||||||||||||||| || |||||||||||    
1839191 attttatgacctcaagtagaaattcgaactctaatta---catgtgtctaaggtgtttagatctttataaattacactcttgggccggagggctaac 1839284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 508 - 601
Target Start/End: Complemental strand, 6523583 - 6523489
Alignment:
508 ttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaa-aaaccattgagcattggctt 601  Q
    ||||| ||||||| |  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| | | |||||||| |||||||    
6523583 ttgcaaggttggcttcaatagctgaagaggtttgtttccttgatgtgatttcaaaagttaaaaagtatttgaaagagatcattgagccttggctt 6523489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 634 - 755
Target Start/End: Original strand, 1827222 - 1827343
Alignment:
634 tactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcatgaaggattttatgacct 733  Q
    |||||||||||| |||||||| ||| ||| ||||||||| ||||||||| || ||| ||| || ||||||   ||||||||||    |||||||||||||    
1827222 tactttctctatcgaattgcagtgcttgcaaagattgattcaatttggggtagaaaatataagcctcaagcctattcactcattgccgattttatgacct 1827321  T
734 tgagtagaaattcaaactctaa 755  Q
     |||||||||||| ||||||||    
1827322 cgagtagaaattcgaactctaa 1827343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 451
Target Start/End: Complemental strand, 6528768 - 6528446
Alignment:
127 tgttaccctgtgtcaggtgttgctatatttggagaaccattt-gtgttgagtataagtttgagaagcaagtttcaggtgatttaacaatgttggcacatc 225  Q
    ||||| ||||||||||||| ||||||| |  ||||||||||| ||||||||||||| |  |||||| | | ||  ||||||||    ||||| ||||| |    
6528768 tgttatcctgtgtcaggtgatgctatactcagagaaccattttgtgttgagtataaatgggagaagaagggttggggtgatttgttgatgttagcacacc 6528669  T
226 ctcttcatcttcatctccagcttttgtataagaaagattgttg---tgttaccgttttgagttattttaagtataaaagcatttatgcagagcttgtcaa 322  Q
    |||||||||||||      |||||| | | |||||||||||     | |||| ||||||||| |||| ||||||||||||||| |||  || |||||       
6528668 ctcttcatcttca------gcttttatctgagaaagattgtaagaatattactgttttgagtgatttcaagtataaaagcattgatggcgatcttgttgg 6528575  T
323 tgttgttggtgattcatggattttgaaaaccgatcatgtttccataacttggcattcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttca 422  Q
      |||||| |||||| |||||||||||||| ||||||||||| || |||||| |||| |  || ||||| |||||| ||    ||||| |||||||||||    
6528574 cattgttgctgattcgtggattttgaaaactgatcatgtttctattacttggtattccacaaagggtgtgaaagaaaaacactatgatcaaattgtttca 6528475  T
423 gctcttttgaaatatgttgaaggtttgaa 451  Q
     | ||||| |   ||||||||||||||||    
6528474 tcactttttacggatgttgaaggtttgaa 6528446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 910 - 955
Target Start/End: Original strand, 1822452 - 1822497
Alignment:
910 ttgcatcaacacttacatcattggaaattcttgctgctaaaatgtg 955  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
1822452 ttgcatcaacacttacatcattggaaattctttctgctaaaatgtg 1822497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 6526810 - 6526733
Alignment:
237 catctccagcttttgtataagaaagattgttgtgttaccgttttgagttattttaagtataaaagcatttatgcagag 314  Q
    ||||| |||||||||| |||||||||||||  |||||| ||||||||| |||||||||||||| ||||| ||| ||||    
6526810 catctgcagcttttgtctaagaaagattgtaatgttactgttttgagtgattttaagtataaacgcattgatggagag 6526733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 427 - 507
Target Start/End: Original strand, 1832542 - 1832622
Alignment:
427 ttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctaggg 507  Q
    |||||||| |||||||||||||||||||||||| ||||||||  |  ||||| ||||||||| ||||||  ||||||||||    
1832542 ttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttttatcgtaaataaattgctaggg 1832622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 622 - 817
Target Start/End: Complemental strand, 6457348 - 6457156
Alignment:
622 tatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttgggatacaaagtatgagactcaagtggattcactcatgaagg 721  Q
    ||||||||| | ||||||||||||||||||||| ||| ||| ||||||||||||  |||||  | ||||||| |  ||||||   |||||||||||   |    
6457348 tatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttggggaagaaagtataaacctcaagcttattcactcatggcag 6457249  T
722 attttatgaccttgagtagaaattcaaactctaataatgacacgtgtctaaggtgtttcgatctttgtaaattacactcttgagctggagggctaa 817  Q
    ||||  ||| |||  | ||||| |||||||| ||| || ||||  || |||||||||||||||||| |||||| || ||||| |||||||| ||||    
6457248 atttcctgaacttaggaagaaaatcaaactcaaattat-acac--gtttaaggtgtttcgatctttataaatttcattcttgggctggaggactaa 6457156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 286 - 598
Target Start/End: Complemental strand, 6497085 - 6496772
Alignment:
286 attttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccataacttggcattcaagcaa 385  Q
    ||||||||||| |||||||| ||| ||| |||||   ||||||||||||||||||| ||||| |||| |||| |||||   | || |||| ||||| |||    
6497085 attttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgtttatgttacatggctttcaaccaa 6496986  T
386 aggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttt 485  Q
     ||||| ||  |||||| || ||||||||| |||||| | ||| | ||| ||||||   || |  | ||||   |||||||||  ||   |||||||| |    
6496985 tggtgtgaagaaagaatctcgtgatgaaatcgtttcatcacttgtaaaagatgttggcagtctagattcattgaaaataacaacgaaggattcttactct 6496886  T
486 tatggtaaatctattgctagggttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattttaaa-aaa 584  Q
    ||||||||||  ||||  ||||  ||  |||| ||||||||||| ||||||||||  | | | |||||||||||||| ||||  |||| ||| ||| |||    
6496885 tatggtaaattgattggaagggcggcgaggtttgcattgatagccgaagaggtttcatacttagatgtgattccaaaggttaagaagtttttgaaagaaa 6496786  T
585 ccattgagcattgg 598  Q
    ||||||||| ||||    
6496785 ccattgagccttgg 6496772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 6506018 - 6505937
Alignment:
158 gagaaccattt-gtgttgagtataagtttgagaagcaagtttcaggtgatttaacaatgttggcacatcctcttcatcttca 238  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||||||||   | | || ||||| ||||||||||||||    
6506018 gagaaccattttgtgttgagtataagtttgagaagaatgtttcaggtgatttgttattattagcacaccctcttcatcttca 6505937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 897 - 956
Target Start/End: Complemental strand, 6526058 - 6525999
Alignment:
897 gaacttgcagccattgcatcaacacttacatcattggaaattcttgctgctaaaatgtgg 956  Q
    ||||| ||||| | |||||| |||||| ||||||| ||||||||||||||||||||||||    
6526058 gaactcgcagcgactgcatcgacacttgcatcatttgaaattcttgctgctaaaatgtgg 6525999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 784 - 826
Target Start/End: Original strand, 1827355 - 1827397
Alignment:
784 ctttgtaaattacactcttgagctggagggctaactgaattca 826  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
1827355 ctttgtaaactacactcttgggctggagggctaactgaattca 1827397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 824 - 908
Target Start/End: Original strand, 1827411 - 1827495
Alignment:
824 tcaagagagcactagcgaagtcgtgaatgcatactattctgcagccttgattggtataatataagaagatgttgaacttgcagcc 908  Q
    |||||||||| |||| ||||   |||||||||| ||||||||||||||||||  |||  |||| ||||||| |||||| ||||||    
1827411 tcaagagagcgctagtgaagcaatgaatgcatattattctgcagccttgattactatggtatatgaagatgctgaactcgcagcc 1827495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 967 - 1007
Target Start/End: Original strand, 1846961 - 1847001
Alignment:
967 tatgagaaagagtttactaaaaataataaggttattagtgt 1007  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
1846961 tatgagaaagtgtttactaacaataataaggttattagtgt 1847001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 6515753 - 6515825
Alignment:
166 tttgtgttgagtataagtttgagaagcaagtttcaggtgatttaacaatgttggcacatcctcttcatcttca 238  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||   | |||| ||||| ||||||||| ||||    
6515753 tttgtcttgagtataagtttgagaagaaaggttcaggtgatttgttattgttagcacaccctcttcatattca 6515825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 429
Target Start/End: Complemental strand, 6457788 - 6457645
Alignment:
286 attttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgtttccataacttggcattcaagcaa 385  Q
    |||| |||||| |||||||| | |  ||||||||   ||||||||| || |||||| | ||||||||  ||| ||||||  | || |||||||| | |||    
6457788 atttgaagtatcaaagcattgacggcgagcttgttggtgttgttggagactcatggttattgaaaactcatcctgtttctgttacatggcattccaccaa 6457689  T
386 aggtgtaaaagaagaatttcatgatgaaattgtttcagctcttt 429  Q
    |||| | || |||||||||||||||||||||  |||||| ||||    
6457688 aggtatcaatgaagaatttcatgatgaaatttgttcagcacttt 6457645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 824 - 942
Target Start/End: Original strand, 6516525 - 6516643
Alignment:
824 tcaagagagcactagcgaagtcgtgaatgcatactattctgcagccttgattggtataatataagaagatgttgaacttgcagccattgcatcaacactt 923  Q
    ||||||||| ||||| ||||  ||||||||||||||| |||||||||| || || ||   ||| |  |||  | ||||||   | ||||||||||||||     
6516525 tcaagagagtactagtgaagctgtgaatgcatactatgctgcagccttaatgggaatggcatatggtgatcctcaacttgtgtcaattgcatcaacacta 6516624  T
924 acatcattggaaattcttg 942  Q
    |||||||||||||||||||    
6516625 acatcattggaaattcttg 6516643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 955 - 988
Target Start/End: Original strand, 1828456 - 1828489
Alignment:
955 ggaggaaatatttatgagaaagagtttactaaaa 988  Q
    ||||||||||| ||||||||||||||||||||||    
1828456 ggaggaaatatgtatgagaaagagtttactaaaa 1828489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 269 - 601
Target Start/End: Original strand, 35231188 - 35231515
Alignment:
269 tgttaccgttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggt---gattcatggattttgaaaaccgatcatgtttcc 365  Q
    |||||| ||||||| | |||||||||||||||||||| ||   || |||||   ||||||||||   ||| ||||| ||||||||||| ||  |||||      
35231188 tgttactgttttgaatgattttaagtataaaagcattgatagtgaacttgttggtgttgttggttgtgatccatggcttttgaaaaccaattctgttttt 35231287  T
366 ataacttggcattcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataa 465  Q
     |||||||||| |  |  || ||||| ||||||||||| ||| ||||||||||||| | || ||||||  ||||||| ||  | || |||||||  ||||    
35231288 gtaacttggcactttataaatggtgttaaagaagaattacattatgaaattgtttcggttcctttgaatgatgttgagggactaaattcatctgcgataa 35231387  T
466 caagaaattcttcttacttttatggtaaatctattgctagggttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagt 565  Q
    |||| | ||| ||||| |||||||| ||||  ||||| |||         ||||| ||||||||||||||||||||||||||||||||||||||||||||    
35231388 caaggacttcatcttatttttatggaaaattgattgcaagg---------ttggctttgatagctgaagaggtttgtttccttgatgtgattccaaaagt 35231478  T
566 tagaaagtattttaaa-aaaccattgagcattggctt 601  Q
    ||  |||||||| ||| | | |||||||| |||||||    
35231479 taagaagtatttgaaagagatcattgagccttggctt 35231515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 508 - 577
Target Start/End: Original strand, 35243061 - 35243130
Alignment:
508 ttgcatggttggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattt 577  Q
    |||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
35243061 ttgcatagttggctttgatagctgaagaggtttgtttctttgatgtgattccaaaagttaagaagtattt 35243130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 907 - 956
Target Start/End: Original strand, 35244497 - 35244546
Alignment:
907 ccattgcatcaacacttacatcattggaaattcttgctgctaaaatgtgg 956  Q
    |||||| |||||||||| ||||||||||||||  |||||||||| |||||    
35244497 ccattggatcaacacttgcatcattggaaatttgtgctgctaaattgtgg 35244546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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