View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_12 (Length: 442)
Name: NF1074_low_12
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 38005643 - 38006069
Alignment:
| Q |
1 |
atcgaacagtgccgtgtggctcactcgaaggtgataaaacaactatgtttagatcagtcgcactgtttttatttactactgctttagattcatgatacac |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
38005643 |
atcgaacagtgccgtgtggctcaagcgaaggtgataaaacaacgatgtttagatcagtcgcaccgtttttatttactactgctttgaattcatgatacac |
38005742 |
T |
|
| Q |
101 |
gctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccg |
200 |
Q |
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| T |
38005743 |
gctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatgcgcgtatagtgctaaaagaacggcttcaaacccg |
38005842 |
T |
|
| Q |
201 |
gcttgcggttttctatccgcgactcgtgagagataaactccggcgattataggtaggaaacggaggacggtgagctggagatcaccgacattggattgga |
300 |
Q |
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| T |
38005843 |
gcttgcggttttctatccgcgactcgtgagagataaactccggcgattataggtaggaaacggaggacggtgagctggagatcaccgacattggattgga |
38005942 |
T |
|
| Q |
301 |
aagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgagttcgttgag |
400 |
Q |
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| T |
38005943 |
aagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgagttcgttgag |
38006042 |
T |
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| Q |
401 |
gatagagagaggggtggttgatgatgt |
427 |
Q |
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| T |
38006043 |
gatagagagaggggtggttgatgatgt |
38006069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 3 - 424
Target Start/End: Complemental strand, 26462168 - 26461747
Alignment:
| Q |
3 |
cgaacagtgccgtgtggctcactcgaaggtgataaaacaactatgtttagatcagtcgcactgtttttatttactactgctttagattcatgatacacgc |
102 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||| |||| |||| |||||||||||||||| |
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| T |
26462168 |
cgaacagtgccgtgtggctcaagcgaaggcgataaaacaacgatgtttagatcagttgcactgtttttattgtttactactttggattcatgatacacgc |
26462069 |
T |
|
| Q |
103 |
tagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccggc |
202 |
Q |
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| T |
26462068 |
tagggtgtgtcatgtcagggatagtaatggtaacggcttcaccagcgcgtgacgttgtttcatgcgcgtagagagctaaaagaacagcttcaaacccggc |
26461969 |
T |
|
| Q |
203 |
ttgcggttttctatccgcgactcgtgagagataaactccggcgattataggtaggaaacggaggacggtgagctggagatcaccgacattggattggaaa |
302 |
Q |
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||||||||||||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||||||||||| ||||||||| || ||| ||||||||| |
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| T |
26461968 |
ttgcggttttctatcagcgacgcgtgagaggtaaacaccggcgataatcgggaggaaacgtaggacggtgagttggagatcagtgatatttgattggaaa |
26461869 |
T |
|
| Q |
303 |
gtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgagttcgttgagga |
402 |
Q |
| |
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||||| |||||||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
26461868 |
gtgtcgtagagccaacgacaaagattgttgtcaccggcgccggagttgggttggcggaggagggtggcgatttggttgtagatttcgggttcgttgagga |
26461769 |
T |
|
| Q |
403 |
tagagagaggggtggttgatga |
424 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
26461768 |
tagagagaggggtggttgatga |
26461747 |
T |
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