View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_13 (Length: 440)
Name: NF1074_low_13
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 44 - 440
Target Start/End: Original strand, 48171750 - 48172146
Alignment:
| Q |
44 |
gacatcatcatattctttgtgttttgcgctagttgctgtaatagactttttatcctcatgaacaaaacgctcttcatcagaactatggctgtcattatca |
143 |
Q |
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| T |
48171750 |
gacatcatcatattcttggtgttttgcgctagttgctgtaatagactttttatcctcatgaacagaacgctcttcatcggaactatggctgtcattatca |
48171849 |
T |
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| Q |
144 |
tcttcgctctccctttcatcggcagtggcaacactcttttgggaggtacaattgggaggtggaagaggtgcaggaacagcttctggaggaggagaagtgg |
243 |
Q |
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| T |
48171850 |
tcttcgctctcactttcatcggcagtggcaacactcttttgggaggtacaattgggaggtggaagaggtgcaggaacagcttctggaggaggagaagtgg |
48171949 |
T |
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| Q |
244 |
aaagaaaactcaaagcagttacaacatcactcatcaaaggacgcgctgctgattcctcttgtaagcacatggctgcaattgcaacaacttgattcagatc |
343 |
Q |
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| T |
48171950 |
aaagaaaactcaaagcagttacaacatcactcatcaaaggacgcgctgctgattcctcttgtaagcacatggctgcaattgcaacaacttgattcagatc |
48172049 |
T |
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| Q |
344 |
cttttctggataatttttattcagatttggatctgccatatctccatatcttttaggatctctaaatattggttgtgcctgctcagcagttacaagt |
440 |
Q |
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| T |
48172050 |
cttttctggataatttttattcagatttggatctgccatatctccatatcttttaggatctctaaatattggttgtgcctgctcagcagttacaagt |
48172146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 386
Target Start/End: Complemental strand, 35288547 - 35288401
Alignment:
| Q |
240 |
gtggaaagaaaactcaaagcagttacaacatcactcatcaaaggacgcgctgctgattcctcttgtaagcacatggctgcaattgcaacaacttgattca |
339 |
Q |
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| T |
35288547 |
gtggaaagaaaactcagagcggtcacaacgtcgccgatcaaaggacgagcttctggttcctcttgtaagcacatggctgctattgcaacagcttgattaa |
35288448 |
T |
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| Q |
340 |
gatccttttctggataatttttattcagatttggatctgccatatct |
386 |
Q |
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| T |
35288447 |
gatccttttctgggaattgtttgttgagaagtggatctgccatatct |
35288401 |
T |
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