View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1074_low_17 (Length: 412)

Name: NF1074_low_17
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1074_low_17
NF1074_low_17
[»] chr5 (57 HSPs)
chr5 (110-356)||(33006863-33007109)
chr5 (110-356)||(34846323-34846569)
chr5 (110-341)||(15675284-15675536)
chr5 (168-356)||(35468858-35469047)
chr5 (110-338)||(7161976-7162213)
chr5 (110-338)||(43228535-43228772)
chr5 (214-342)||(16667499-16667627)
chr5 (178-356)||(30248933-30249099)
chr5 (104-338)||(16567777-16568020)
chr5 (110-338)||(1672379-1672616)
chr5 (110-338)||(32953560-32953797)
chr5 (168-342)||(34443948-34444110)
chr5 (214-341)||(21068980-21069107)
chr5 (214-342)||(17192675-17192803)
chr5 (219-342)||(12267420-12267543)
chr5 (214-345)||(15503895-15504014)
chr5 (113-223)||(21069131-21069241)
chr5 (110-194)||(14832703-14832787)
chr5 (219-342)||(13942790-13942916)
chr5 (113-199)||(37552048-37552134)
chr5 (113-199)||(37654878-37654964)
chr5 (221-355)||(37779633-37779767)
chr5 (101-194)||(13942636-13942729)
chr5 (110-194)||(2476504-2476588)
chr5 (168-246)||(2476431-2476509)
chr5 (214-315)||(767283-767380)
chr5 (105-201)||(12267270-12267366)
chr5 (183-246)||(14832797-14832860)
chr5 (105-194)||(15504088-15504177)
chr5 (234-338)||(37654774-37654878)
chr5 (260-345)||(9738351-9738436)
chr5 (110-201)||(6900899-6900990)
chr5 (274-356)||(13694803-13694885)
chr5 (221-310)||(37607471-37607560)
chr5 (284-373)||(6900720-6900813)
chr5 (122-192)||(36234459-36234529)
chr5 (234-338)||(37551944-37552048)
chr5 (284-338)||(2476390-2476444)
chr5 (113-175)||(30249123-30249185)
chr5 (214-280)||(36234588-36234654)
chr5 (216-269)||(7159609-7159662)
chr5 (114-167)||(35469069-35469122)
chr5 (141-201)||(767430-767490)
chr5 (233-281)||(42989565-42989613)
chr5 (110-158)||(42989673-42989721)
chr5 (278-345)||(13695029-13695096)
chr5 (160-223)||(39605784-39605847)
chr5 (121-199)||(37779777-37779855)
chr5 (168-223)||(6900856-6900911)
chr5 (214-265)||(15436041-15436091)
chr5 (168-223)||(15504038-15504093)
chr5 (110-145)||(37394932-37394967)
chr5 (110-223)||(8214531-8214645)
chr5 (121-199)||(37607570-37607648)
chr5 (214-243)||(13695092-13695121)
chr5 (214-246)||(6900800-6900832)
chr5 (214-298)||(12317961-12318045)
[»] chr1 (43 HSPs)
chr1 (110-356)||(31844533-31844779)
chr1 (110-356)||(6331642-6331888)
chr1 (110-342)||(8239261-8239495)
chr1 (110-342)||(14727300-14727553)
chr1 (110-342)||(33468863-33469074)
chr1 (110-356)||(27583909-27584160)
chr1 (110-342)||(27460678-27460901)
chr1 (178-342)||(25011518-25011669)
chr1 (168-342)||(25007446-25007608)
chr1 (168-342)||(37153961-37154123)
chr1 (168-342)||(44305394-44305556)
chr1 (219-342)||(48940438-48940561)
chr1 (112-223)||(34459231-34459342)
chr1 (112-223)||(49898498-49898609)
chr1 (114-209)||(9527181-9527276)
chr1 (182-246)||(1428404-1428468)
chr1 (216-316)||(24745410-24745508)
chr1 (110-201)||(4774104-4774195)
chr1 (214-342)||(9527027-9527143)
chr1 (214-342)||(24646036-24646151)
chr1 (214-342)||(44238875-44238992)
chr1 (110-181)||(25011429-25011500)
chr1 (111-181)||(1428312-1428382)
chr1 (114-223)||(6801980-6802089)
chr1 (111-200)||(24646181-24646270)
chr1 (110-167)||(25007630-25007687)
chr1 (110-167)||(37153882-37153939)
chr1 (122-201)||(4641941-4642020)
chr1 (110-200)||(24745540-24745628)
chr1 (234-356)||(4773975-4774085)
chr1 (215-280)||(34459141-34459206)
chr1 (110-167)||(44305578-44305635)
chr1 (214-356)||(6802113-6802247)
chr1 (216-340)||(4642089-4642201)
chr1 (110-157)||(17875579-17875626)
chr1 (284-342)||(1428455-1428513)
chr1 (168-223)||(4642008-4642063)
chr1 (110-145)||(42817784-42817819)
chr1 (141-191)||(48940328-48940378)
chr1 (284-342)||(49898397-49898455)
chr1 (217-246)||(49898442-49898471)
chr1 (105-145)||(4163546-4163586)
chr1 (214-246)||(33169338-33169370)
[»] chr3 (43 HSPs)
chr3 (110-342)||(26370934-26371166)
chr3 (110-342)||(37516618-37516850)
chr3 (168-356)||(7500918-7501106)
chr3 (114-342)||(25391741-25391957)
chr3 (168-342)||(53651886-53652048)
chr3 (168-342)||(44047572-44047734)
chr3 (168-338)||(14461057-14461215)
chr3 (168-342)||(28311265-28311427)
chr3 (215-340)||(41218389-41218514)
chr3 (105-338)||(26278343-26278564)
chr3 (178-342)||(12909808-12909968)
chr3 (110-345)||(53987849-53988061)
chr3 (221-338)||(35077204-35077321)
chr3 (214-342)||(33179141-33179257)
chr3 (215-345)||(41358632-41358763)
chr3 (168-246)||(43700164-43700242)
chr3 (110-191)||(33178984-33179065)
chr3 (110-194)||(41218247-41218331)
chr3 (214-282)||(53068278-53068346)
chr3 (110-194)||(43700085-43700169)
chr3 (284-342)||(43700229-43700287)
chr3 (110-167)||(28311449-28311506)
chr3 (284-356)||(44625672-44625744)
chr3 (110-173)||(44047750-44047812)
chr3 (221-282)||(9600386-9600447)
chr3 (110-167)||(12909998-12910055)
chr3 (110-167)||(14461237-14461294)
chr3 (216-269)||(38239502-38239555)
chr3 (110-164)||(53652073-53652127)
chr3 (284-338)||(9600342-9600396)
chr3 (110-200)||(41358513-41358601)
chr3 (284-342)||(53068230-53068288)
chr3 (221-298)||(30172616-30172693)
chr3 (214-271)||(36869966-36870023)
chr3 (112-157)||(51408472-51408517)
chr3 (214-298)||(4293318-4293401)
chr3 (110-166)||(7501129-7501185)
chr3 (214-254)||(43447620-43447660)
chr3 (220-295)||(4245823-4245898)
chr3 (110-156)||(31989295-31989341)
chr3 (220-282)||(47511667-47511729)
chr3 (214-266)||(497401-497453)
chr3 (214-246)||(41199946-41199978)
[»] chr7 (41 HSPs)
chr7 (122-355)||(26722863-26723096)
chr7 (168-342)||(35300399-35300573)
chr7 (110-338)||(7873112-7873349)
chr7 (122-342)||(41759531-41759753)
chr7 (110-356)||(5991312-5991564)
chr7 (110-338)||(22206578-22206815)
chr7 (110-338)||(22227924-22228161)
chr7 (168-298)||(23704440-23704570)
chr7 (214-343)||(3012279-3012408)
chr7 (110-223)||(3012432-3012545)
chr7 (110-338)||(25688103-25688319)
chr7 (217-342)||(19377365-19377490)
chr7 (214-318)||(4843298-4843402)
chr7 (117-282)||(38991076-38991245)
chr7 (214-342)||(28694057-28694184)
chr7 (118-209)||(42439462-42439553)
chr7 (110-223)||(814865-814978)
chr7 (110-194)||(21932634-21932718)
chr7 (216-356)||(21932798-21932925)
chr7 (214-298)||(38129010-38129094)
chr7 (216-282)||(21688145-21688211)
chr7 (122-201)||(4843452-4843531)
chr7 (113-223)||(38128876-38128986)
chr7 (112-201)||(28693897-28693986)
chr7 (214-286)||(42439591-42439663)
chr7 (214-342)||(815002-815118)
chr7 (112-282)||(30852373-30852531)
chr7 (237-338)||(5850707-5850808)
chr7 (110-223)||(41862238-41862351)
chr7 (122-191)||(19377554-19377623)
chr7 (110-194)||(21688288-21688372)
chr7 (113-181)||(23704364-23704432)
chr7 (104-156)||(27387163-27387215)
chr7 (110-157)||(19400247-19400294)
chr7 (110-157)||(45197906-45197953)
chr7 (110-167)||(35300320-35300377)
chr7 (110-144)||(25491497-25491531)
chr7 (110-147)||(6113579-6113616)
chr7 (110-151)||(10224164-10224205)
chr7 (284-317)||(21688122-21688155)
chr7 (214-262)||(1756821-1756869)
[»] chr4 (51 HSPs)
chr4 (110-339)||(10058511-10058740)
chr4 (110-356)||(31364104-31364338)
chr4 (178-356)||(4728515-4728693)
chr4 (110-342)||(46645574-46645827)
chr4 (186-342)||(2576142-2576299)
chr4 (110-342)||(4552168-4552409)
chr4 (110-338)||(9003543-9003779)
chr4 (168-356)||(10715623-10715801)
chr4 (168-356)||(10929393-10929571)
chr4 (110-338)||(14044332-14044548)
chr4 (214-342)||(25237547-25237675)
chr4 (178-342)||(2017418-2017570)
chr4 (178-345)||(40969204-40969359)
chr4 (111-342)||(41972335-41972570)
chr4 (110-342)||(50383871-50384097)
chr4 (110-194)||(43003076-43003160)
chr4 (214-323)||(2521948-2522056)
chr4 (104-338)||(11826934-11827155)
chr4 (110-201)||(52373887-52373978)
chr4 (214-340)||(31929048-31929174)
chr4 (110-338)||(9694074-9694288)
chr4 (104-194)||(32006023-32006113)
chr4 (112-201)||(2521792-2521881)
chr4 (214-299)||(36947532-36947617)
chr4 (16-102)||(45887025-45887113)
chr4 (219-282)||(8901834-8901897)
chr4 (214-272)||(49745080-49745138)
chr4 (110-223)||(25237699-25237812)
chr4 (105-175)||(4728717-4728787)
chr4 (168-218)||(32005978-32006028)
chr4 (284-345)||(1585689-1585750)
chr4 (112-181)||(40969377-40969446)
chr4 (281-345)||(15034545-15034609)
chr4 (129-201)||(50100003-50100075)
chr4 (110-173)||(2017329-2017392)
chr4 (284-342)||(32005897-32005955)
chr4 (110-199)||(32828278-32828367)
chr4 (110-177)||(2576329-2576396)
chr4 (214-281)||(50099872-50099939)
chr4 (214-340)||(41955199-41955324)
chr4 (110-167)||(10715823-10715880)
chr4 (110-167)||(10929593-10929650)
chr4 (290-338)||(32828202-32828250)
chr4 (214-281)||(52373770-52373837)
chr4 (214-296)||(42739869-42739951)
chr4 (284-356)||(6017085-6017157)
chr4 (127-191)||(49745199-49745263)
chr4 (111-145)||(6017306-6017340)
chr4 (284-342)||(50099823-50099881)
chr4 (110-151)||(6255439-6255480)
chr4 (105-157)||(37236116-37236168)
[»] chr6 (31 HSPs)
chr6 (114-342)||(1780939-1781155)
chr6 (113-356)||(9696012-9696276)
chr6 (168-342)||(15528917-15529091)
chr6 (110-342)||(10397701-10397925)
chr6 (168-345)||(9046886-9047063)
chr6 (186-338)||(15122018-15122170)
chr6 (168-305)||(2941230-2941367)
chr6 (168-356)||(34248984-34249160)
chr6 (214-342)||(2836217-2836345)
chr6 (168-356)||(23663730-23663906)
chr6 (110-201)||(2960805-2960896)
chr6 (214-341)||(339319-339434)
chr6 (117-194)||(2836066-2836143)
chr6 (112-201)||(31188206-31188295)
chr6 (110-194)||(23663651-23663735)
chr6 (122-194)||(34248917-34248989)
chr6 (112-268)||(14938816-14938981)
chr6 (259-342)||(34188773-34188856)
chr6 (110-200)||(339472-339562)
chr6 (105-191)||(15122186-15122272)
chr6 (110-201)||(34188931-34189022)
chr6 (113-191)||(28614299-28614377)
chr6 (260-336)||(28614434-28614510)
chr6 (113-167)||(2941389-2941443)
chr6 (109-163)||(9046806-9046860)
chr6 (112-201)||(31200050-31200140)
chr6 (110-173)||(15529107-15529170)
chr6 (285-338)||(2960671-2960724)
chr6 (110-157)||(26218301-26218348)
chr6 (221-282)||(2960715-2960776)
chr6 (284-356)||(5582444-5582516)
[»] chr8 (24 HSPs)
chr8 (110-356)||(36406381-36406648)
chr8 (114-356)||(24965001-24965231)
chr8 (168-342)||(3383990-3384164)
chr8 (178-356)||(28928027-28928194)
chr8 (214-342)||(13243064-13243192)
chr8 (214-342)||(39431679-39431807)
chr8 (114-282)||(27321758-27321935)
chr8 (110-199)||(38214860-38214949)
chr8 (117-194)||(34282759-34282836)
chr8 (213-342)||(34282913-34283030)
chr8 (110-194)||(35384257-35384341)
chr8 (214-345)||(8968309-8968435)
chr8 (220-318)||(31500854-31500950)
chr8 (110-223)||(31500707-31500818)
chr8 (104-181)||(28928212-28928289)
chr8 (122-191)||(13243273-13243342)
chr8 (214-345)||(21138075-21138194)
chr8 (284-338)||(27321925-27321979)
chr8 (284-338)||(38214745-38214799)
chr8 (110-167)||(3383911-3383968)
chr8 (221-282)||(38214789-38214850)
chr8 (214-296)||(26945689-26945771)
chr8 (214-263)||(24674618-24674667)
chr8 (110-151)||(42232063-42232104)
[»] chr2 (44 HSPs)
chr2 (110-342)||(22572613-22572833)
chr2 (168-356)||(6799856-6800032)
chr2 (178-342)||(13203750-13203902)
chr2 (214-374)||(25562869-25563034)
chr2 (168-356)||(41114840-41115016)
chr2 (168-342)||(18299113-18299275)
chr2 (122-342)||(2475805-2476018)
chr2 (110-278)||(29257401-29257590)
chr2 (110-223)||(17249441-17249554)
chr2 (110-194)||(303983-304067)
chr2 (214-286)||(17148808-17148879)
chr2 (217-342)||(12000505-12000619)
chr2 (214-345)||(34756659-34756790)
chr2 (105-223)||(45444339-45444458)
chr2 (112-194)||(41010652-41010734)
chr2 (214-342)||(304141-304255)
chr2 (110-194)||(17148936-17149020)
chr2 (110-223)||(16220920-16221033)
chr2 (217-272)||(15651248-15651303)
chr2 (215-282)||(17249349-17249416)
chr2 (214-281)||(41010507-41010574)
chr2 (118-194)||(33909246-33909322)
chr2 (110-181)||(13203920-13203991)
chr2 (113-167)||(41114764-41114818)
chr2 (110-191)||(12000700-12000781)
chr2 (125-181)||(18299049-18299105)
chr2 (168-223)||(304062-304117)
chr2 (168-223)||(12000646-12000701)
chr2 (215-278)||(15429213-15429276)
chr2 (215-282)||(33909359-33909426)
chr2 (284-345)||(4570554-4570615)
chr2 (232-297)||(19881534-19881599)
chr2 (110-151)||(26655690-26655731)
chr2 (214-298)||(13654790-13654874)
chr2 (110-157)||(1955096-1955143)
chr2 (160-223)||(34756834-34756897)
chr2 (110-145)||(35649538-35649573)
chr2 (110-157)||(42477605-42477652)
chr2 (289-342)||(33909421-33909474)
chr2 (284-345)||(42152602-42152663)
chr2 (214-246)||(9011436-9011468)
chr2 (284-340)||(16221076-16221132)
chr2 (110-194)||(25563112-25563196)
chr2 (221-261)||(29759855-29759895)
[»] scaffold0638 (1 HSPs)
scaffold0638 (110-338)||(4085-4301)
[»] scaffold0075 (5 HSPs)
scaffold0075 (168-342)||(6893-7055)
scaffold0075 (168-282)||(11554-11668)
scaffold0075 (110-167)||(11690-11747)
scaffold0075 (285-342)||(11507-11563)
scaffold0075 (111-167)||(7077-7132)
[»] scaffold0618 (1 HSPs)
scaffold0618 (110-278)||(1730-1919)
[»] scaffold0021 (4 HSPs)
scaffold0021 (214-342)||(109316-109444)
scaffold0021 (113-223)||(112099-112210)
scaffold0021 (214-316)||(112234-112333)
scaffold0021 (113-194)||(109198-109280)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 57)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 110 - 356
Target Start/End: Complemental strand, 33007109 - 33006863
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  33007109 ggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttc 33007010  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  |     
T  33007009 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaaaatccgcaggtaaatccgcaggaaaagctaaaaaatt 33006910  T
Q  310 tagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||    
T  33006909 tagtaatggttgggtttgctacaaagaaagttggagccgagcctggg 33006863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 110 - 356
Target Start/End: Complemental strand, 34846569 - 34846323
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  34846569 ggcggagccaggaattttatagagcctggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttc 34846470  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
     ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||    
T  34846469 atgcggaacctaaatccttggcaaaatctgtaggaaatgtgtttactgcggaatttacacaaaaatccggaggtaaatccgcaggataagctaaaaattc 34846370  T
Q  310 tagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||||||||| |  |||||||||||||||||| || |||| |||||    
T  34846369 tagtaatggtttgacttgctacaaagaaagttggagccgagcctggg 34846323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 110 - 341
Target Start/End: Complemental strand, 15675536 - 15675284
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttccta-------------- 195  Q
    |||||||| || |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||                   
T  15675536 ggcggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtagataatttcaca 15675437  T
Q  196 -------cggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatc 288  Q
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  15675436 tttccttcggatatatctttcctgcggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcaggtaaatc 15675337  T
Q  289 cgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagtt 341  Q
    ||||| ||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  15675336 cgcagaaaaagttaaaaattctagtaatggttgggtttgcaacaaagaaagtt 15675284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 168 - 356
Target Start/End: Complemental strand, 35469047 - 35468858
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35469047 tttcctgcagataatttcacattttctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 35468948  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagct-aaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||| ||||||||  |||||||||| ||||||| |||| |||||| |||||||||| |||||||||||||||||| || |||| |||||    
T  35468947 acaaaaatccgcagaaaaatccgcagaaaaagctaaaaaattctagcaatggttgggcttgctacaaagaaagttggagccgagcctggg 35468858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 110 - 338
Target Start/End: Original strand, 7161976 - 7162213
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||| ||||||| ||||| ||||||||||||  ||||| | ||       
T  7161976 ggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcaaataatttcacatttcctgtggataatttcaca 7162075  T
Q  206 tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagc 300  Q
    |||||||||||| ||     ||||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||    
T  7162076 tttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgtggaatttacataaaaatcctcaggtaaatccgcaggaaaagc 7162175  T
Q  301 taaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    |||||||| ||||||||| |||| ||||||||||||||    
T  7162176 taaaatttttagtaatggctgggcttgctacaaagaaa 7162213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 110 - 338
Target Start/End: Original strand, 43228535 - 43228772
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    |||||||||||||||||||||||| |||||||||||| | || |||||| |||||| ||||||||||||||| |||| ||||| | | |||| | ||       
T  43228535 ggcggagccagaaattttatagagcctgggcaaaaaactaatcgcaaaatgttactcctttcctgcgaataatttcatatttcttgcagataatttcaca 43228634  T
Q  206 tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagc 300  Q
    |||||||||||| ||     ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  43228635 tttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaacatccgcaggtaaatccgtaggaaaagc 43228734  T
Q  301 taaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||| |||||||||||| |||| ||||||||||||||    
T  43228735 taaaagttctagtaatggctgggcttgctacaaagaaa 43228772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 16667499 - 16667627
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  16667499 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaatccgcaggaaaagctaaaagttctagt 16667598  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||||| |||  ||||||||||||||||||    
T  16667599 aatggctggacttgctacaaagaaagttg 16667627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 178 - 356
Target Start/End: Complemental strand, 30249099 - 30248933
Alignment:
Q  178 ataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatcc 277  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  30249099 ataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------ 30249006  T
Q  278 gcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
          |||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||| || |||| |||||    
T  30249005 ------aaatccgcagaaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctggg 30248933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 104 - 338
Target Start/End: Complemental strand, 16568020 - 16567777
Alignment:
Q  104 aacaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-t 202  Q
    ||||| ||||||| ||||||||||||||||  ||||||||||| |||| |||||| |||||||| |||||| |||||| |||||||||||| |||||| |    
T  16568020 aacagtggcggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttccttcctgggaataatttcacatttcctgcggataat 16567921  T
Q  203 atc---tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcagg 294  Q
     ||   |||||||||||| ||     ||||||| ||||||||||| ||||||||||||||||||| |||||||| ||  || |||||||||||||||| |    
T  16567920 ttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgtaggaaatgtgtttcctgcgaaatttacataacaattcgcaggtaaatccgcaag 16567821  T
Q  295 aaaagctaaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||||||||| |||||||||||| |||  ||||||||||||||    
T  16567820 aaaagctaaaagttctagtaatggctggacttgctacaaagaaa 16567777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 110 - 338
Target Start/End: Original strand, 1672379 - 1672616
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||| ||||||||||||| ||||||||| || | |||| | ||       
T  1672379 ggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataatttcaca 1672478  T
Q  206 tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagc 300  Q
    ||||||  |||| ||     ||||||| |||||||||||||| |||| ||||||||||||||| |||| ||| || ||||||||||||||||||||| |     
T  1672479 tttcctatggaatctgtaggaaatcctaggcaaaatctgcagaaaatatgtttcctgcggaatgtacataaaaattcgcaggtaaatccgcaggaaagga 1672578  T
Q  301 taaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  1672579 taaaagttctagtaatggttgggattgctacaaagaaa 1672616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 110 - 338
Target Start/End: Original strand, 32953560 - 32953797
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    |||||||||  ||||||||||||| ||| |||||||| |||| |||||| |||||||| ||||| ||||||| |||||||||||| | |||| | ||       
T  32953560 ggcggagccgtaaattttatagagcctgtgcaaaaaagttatcgcaaaatgttacttccttcctacgaataatttcacatttcctgcagataatttcaca 32953659  T
Q  206 tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagc 300  Q
    |||||||||||| ||     ||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||  ||||||||||||| |||||||||    
T  32953660 tttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctacggaatttacataaaaatttgcaggtaaatccgtaggaaaagc 32953759  T
Q  301 taaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||| |||||||||||| |||| ||||||||||||||    
T  32953760 taaaagttctagtaatggctgggcttgctacaaagaaa 32953797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 168 - 342
Target Start/End: Complemental strand, 34444110 - 34443948
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||     
T  34444110 tttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgcatttcttgcggaatttag 34444011  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||            ||||||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||    
T  34444010 acaa------------aaatccgcaggaaaagctacaaattctagtaatggtagggcttgctacaaagaaagttg 34443948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 214 - 341
Target Start/End: Complemental strand, 21069107 - 21068980
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||| ||||||| |||||||    
T  21069107 ggaacctaaatctttggcaaaatctgcaggaaatgtgtttcttgcggaatatacacaaaaatgcgcaggtaaatccgcaggaaaggctaaaaattctagt 21069008  T
Q  314 aatggttgggtttgctacaaagaaagtt 341  Q
    |||||||||| || ||||||||||||||    
T  21069007 aatggttgggcttactacaaagaaagtt 21068980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 17192675 - 17192803
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||||| |||||||| |||||||    
T  17192675 ggaacctaaatccttgacaaaatctgcaggaaatgtatttcctgcggaattgacacaaaaatccgccggtaaatccgcaggaagagctaaaagttctagt 17192774  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||||| || | ||||||||||||||||||    
T  17192775 aatggctgagcttgctacaaagaaagttg 17192803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 12267420 - 12267543
Alignment:
Q  219 ctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatgg 318  Q
    |||||| | ||||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||| |    
T  12267420 ctaaattcgtggcaaaatctacaggaaatgtgtttcttgcggaatttacataaaaatccgcaggtaaatccacaggaaaagctaaaagttctagtaattg 12267519  T
Q  319 ttgggtttgctacaaagaaagttg 342  Q
     | || ||||||||||||||||||    
T  12267520 ctaggcttgctacaaagaaagttg 12267543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 214 - 345
Target Start/End: Complemental strand, 15504014 - 15503895
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            |||||||||||||||||||||| |||||||    
T  15504014 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaa------------aaatccgcaggaaaagctaaaaattctagt 15503927  T
Q  314 aatggttgggtttgctacaaagaaagttgaag 345  Q
    ||||||| || |||||||||||||| ||||||    
T  15503926 aatggttaggcttgctacaaagaaatttgaag 15503895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 21069241 - 21069131
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcctg 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||  ||||| |||||||||||| | |||||||||||||||    
T  21069241 ggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttatttccttcctggaaataatttcacatttcctgcagatatatctttcctg 21069142  T
Q  213 cggaacctaaa 223  Q
     ||| ||||||    
T  21069141 tggatcctaaa 21069131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 14832703 - 14832787
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||    
T  14832703 ggcggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcct 14832787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 13942790 - 13942916
Alignment:
Q  219 ctaaatccttggcaaaatctgcaggaaatgtg---tttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaa 315  Q
    ||||||||||||||||||||||||||||||||   |||  || ||||| |||||||| ||| ||||||||||| | |||||||||| ||| |||||||||    
T  13942790 ctaaatccttggcaaaatctgcaggaaatgtggtgtttattgtggaatctacacaaaaatctgcaggtaaatcggtaggaaaagctcaaagttctagtaa 13942889  T
Q  316 tggttgggtttgctacaaagaaagttg 342  Q
     || |||||||||||||||||||||||    
T  13942890 aggctgggtttgctacaaagaaagttg 13942916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 37552134 - 37552048
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacgga 199  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||| ||||    
T  37552134 ggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcctgcgga 37552048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 37654964 - 37654878
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacgga 199  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||| ||||    
T  37654964 ggagccagaaattttatagagcctgggcaaaaaaattattgcaaaatgttacttccttcctgcgaataatttcacatttcctgcgga 37654878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 355
Target Start/End: Complemental strand, 37779767 - 37779633
Alignment:
Q  221 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggtt 320  Q
    ||||||| | |||||||||||||||||||||||| | ||||||||||| ||| || ||||||||||||||||| |||| |||||| |||||||||||| |    
T  37779767 aaatcctagacaaaatctgcaggaaatgtgtttcatacggaatttacataaatattcgcaggtaaatccgcagaaaaaactaaaagttctagtaatggct 37779668  T
Q  321 gggtttgctacaaagaaagttgaagtcgaggctgg 355  Q
    |   |||||||||||||| ||| ||| ||| ||||    
T  37779667 gaacttgctacaaagaaaattggagttgagcctgg 37779633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 13942636 - 13942729
Alignment:
Q  101 gtgaacaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||| ||| |||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  13942636 gtgaccagtggcggagccagaaattttatagagcctgggtaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 13942729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 2476588 - 2476504
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||    
T  2476588 ggcggagccagaaattatatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 2476504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 2476509 - 2476431
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 246  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  2476509 tttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaatccttgataaaatccgcaggaaa 2476431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 767380 - 767283
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||    |||||||||||||||||||||||| |||| ||    
T  767380 ggaatctaaatccttggcaaaacctgtaggaaatgtgtttcctgcggaatttatacaaaaatcc----gtaaatccgcaggaaaagctaaaagttcttgt 767285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 12267270 - 12267366
Alignment:
Q  105 acaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    |||| |||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| |||||| |||||| ||||||||| || ||||||    
T  12267270 acagtggcggagccagacattttatagagcctgggcaaaaagtttatcgcaaaacgttacttccttcctgtgaataatttcacattttctgcggata 12267366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 14832797 - 14832860
Alignment:
Q  183 ttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 246  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  14832797 ttcacatttcctacggatatatctttcctgcggaatctaaatccttggcaaaatctacaggaaa 14832860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 15504177 - 15504088
Alignment:
Q  105 acaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||| |||||||||||||||| ||||||| || | |||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||    
T  15504177 acagtggcggagccagaaattatatagagcctcgacaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 15504088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 338
Target Start/End: Complemental strand, 37654878 - 37654774
Alignment:
Q  234 aatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaa 333  Q
    |||||||||||||||||||||||  |||||||||| ||  || ||||||||||||||||||||||| ||||| |||||||||| | |||  |||||| ||    
T  37654878 aatctgcaggaaatgtgtttcctatggaatttacataacaattcgcaggtaaatccgcaggaaaagataaaagttctagtaatagctggacttgctagaa 37654779  T
Q  334 agaaa 338  Q
    |||||    
T  37654778 agaaa 37654774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 9738436 - 9738351
Alignment:
Q  260 gaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaag 345  Q
    ||||||||||||| ||| |||||||||||||||||||| || | || ||||||||||||||||| ||||| |||||||||| ||||    
T  9738436 gaatttacacaaaaatctgcaggtaaatccgcaggaaatgcgagaagttctagtaatggttgggcttgcttcaaagaaagtagaag 9738351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 6900990 - 6900899
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||| ||||||||| ||||||| || | ||||||||||| |||||| |||||||| ||| ||||||||| |||||||||||| ||||||    
T  6900990 ggcggagacagaaatttaatagagtatgagtaaaaaatttatcgcaaaatgttacttccttcatgcgaataatttcacatttcctgcggata 6900899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 13694885 - 13694803
Alignment:
Q  274 atccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    |||||||| ||||||| |||||||||| | || |||||||||||| |||| |||||||||||||||||||||| ||| |||||    
T  13694885 atccgcagataaatccacaggaaaagcgagaagttctagtaatggatgggcttgctacaaagaaagttgaagttgagcctggg 13694803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 310
Target Start/End: Complemental strand, 37607560 - 37607471
Alignment:
Q  221 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttct 310  Q
    ||||||| | |||||||||||||||||||||||| | ||||||||||| ||| ||  |||||||||||||||| |||| |||||| ||||    
T  37607560 aaatcctagacaaaatctgcaggaaatgtgtttcatacggaatttacataaatatttgcaggtaaatccgcagaaaaaactaaaagttct 37607471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 6900813 - 6900720
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcga----ggctgggtggtggctccgcccctg 373  Q
    ||||| |||||||||||||||| |||||||||||| || | |||||||||||||||||| ||| ||    ||||||| ||||||||||||||||    
T  6900813 aaatctgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagttgaggctggctggggggtggctccgcccctg 6900720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 36234459 - 36234529
Alignment:
Q  122 aattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttc 192  Q
    ||||||||||||| ||| |||||||||||| |||||| |||||||| ||| ||||||||| ||||||||||    
T  36234459 aattttatagagtttggacaaaaaatttatcgcaaaatgttacttccttcttgcgaataatttcacatttc 36234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 338
Target Start/End: Complemental strand, 37552048 - 37551944
Alignment:
Q  234 aatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaa 333  Q
    ||||| |||||||||||||||||  | |||||||| ||  || ||||||||| ||||||||||||| ||||| |||||||||| | |||  |||||| ||    
T  37552048 aatctacaggaaatgtgtttcctatgaaatttacataacaattcgcaggtaactccgcaggaaaagataaaagttctagtaatagctggacttgctagaa 37551949  T
Q  334 agaaa 338  Q
    |||||    
T  37551948 agaaa 37551944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 2476444 - 2476390
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    |||||||||||||||||||||| ||||||||||||| ||  ||||||||||||||    
T  2476444 aaatccgcaggaaaagctaaaaattctagtaatggtaggacttgctacaaagaaa 2476390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 30249185 - 30249123
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgc 175  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||| |||  |||||||    
T  30249185 ggagccaggaattttacagagtctgggcaaaaaatttatcgcaaaacgttgctttcttcctgc 30249123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 36234588 - 36234654
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgca 280  Q
    ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||||||| ||| |||||||    
T  36234588 ggaacttaaacccttggtaaaatctgcaggaaatgcgtttcctgctgaatttacataaaaatccgca 36234654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 7159609 - 7159662
Alignment:
Q  216 aacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacac 269  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||| |||||    
T  7159609 aacctaaattcttggcaaaatccgcaggaaacgtgtttcctgcggaatgtacac 7159662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 35469122 - 35469069
Alignment:
Q  114 gagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||| ||||||||    
T  35469122 gagccaggaattttatagagcctgggcaaaaaatttatcgcaaaatgttacttc 35469069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 767490 - 767430
Alignment:
Q  141 aaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||| ||||| || ||||||    
T  767490 aaaaaatttattgcaaaacgttactttcttcctgcgaataatttctcattttctgcggata 767430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 42989613 - 42989565
Alignment:
Q  233 aaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcag 281  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  42989613 aaatccgcaggaaatgtgtttcctgcggaatttacacaaaaattcgcag 42989565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 42989721 - 42989673
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaa 158  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  42989721 ggcggagtcaggaattttatagagtctggacaaaaaatttattgcaaaa 42989673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 13695096 - 13695029
Alignment:
Q  278 gcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaag 345  Q
    |||||||||||| |||||||||| | || |||||||||||| ||   |||||||||||||||||||||    
T  13695096 gcaggtaaatccacaggaaaagcgagaagttctagtaatggatgaacttgctacaaagaaagttgaag 13695029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 39605784 - 39605847
Alignment:
Q  160 gttacttctttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaa 223  Q
    |||||||| ||| |||| |||| | |||||||||| ||||||||||||||||||||| ||||||    
T  39605784 gttacttcattcatgcggataattgcacatttcctgcggatatatctttcctgcggatcctaaa 39605847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 37779855 - 37779777
Alignment:
Q  121 aaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacgga 199  Q
    |||||||||||||  || |||||||| |||| | |||| |||||||| |||| |||||||| |||||||||||| ||||    
T  37779855 aaattttatagagcttgtgcaaaaaaattatcgtaaaatgttacttccttccagcgaataatttcacatttcctgcgga 37779777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 6900911 - 6900856
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaa 223  Q
    ||||||||| |||| |||||||||| | ||||||||||||||| ||||| ||||||    
T  6900911 tttcctgcggataatttcacatttcttgcggatatatctttcccgcggatcctaaa 6900856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 15436091 - 15436041
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaattt 265  Q
    |||| ||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  15436091 ggaatctaaatcctaggcaaaatccgcaggaaat-tgtttcctgcggaattt 15436041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 15504093 - 15504038
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaa 223  Q
    ||||||||  |||| |||||||||||| ||||||||||||||| ||||| ||||||    
T  15504093 tttcctgcagataatttcacatttcctgcggatatatctttcccgcggatcctaaa 15504038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 37394967 - 37394932
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaa 145  Q
    |||||||||||||||||||||||||||| |||||||    
T  37394967 ggcggagccagaaattttatagagtctgagcaaaaa 37394932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 8214531 - 8214645
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttc-ctacggatatatcttt 208  Q
    |||||| |||| |||| || |||| || || |||||| |||| | |||| ||||| |  ||||||||||||| |||| ||||  || |||||||||||||    
T  8214531 ggcggaaccaggaattataaagagccttggtaaaaaaattatcgtaaaatgttacgtacttcctgcgaataatttcatatttgtctgcggatatatcttt 8214630  T
Q  209 cctgcggaacctaaa 223  Q
    |||||||| ||||||    
T  8214631 cctgcggatcctaaa 8214645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 37607648 - 37607570
Alignment:
Q  121 aaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacgga 199  Q
    |||||||||||||  || |||||||| |||| | |||| |||||||| |||| || ||||| |||||||||||| ||||    
T  37607648 aaattttatagagcttgtgcaaaaaaattatcgtaaaatgttacttccttccagcaaataatttcacatttcctgcgga 37607570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 13695121 - 13695092
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcagg 243  Q
    ||||||||||||||||||||||||||||||    
T  13695121 ggaacctaaatccttggcaaaatctgcagg 13695092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 6900832 - 6900800
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaa 246  Q
    |||||||||||||||| ||||||||||||||||    
T  6900832 ggaacctaaatccttgacaaaatctgcaggaaa 6900800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 12317961 - 12318045
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaa 298  Q
    ||||||||||||||| ||||||||   ||||||| ||||||||||| ||||| |||  | || ||| ||||| ||||| ||||||    
T  12317961 ggaacctaaatccttagcaaaatccataggaaatttgtttcctgcgaaattttcacctaaattcgccggtaattccgctggaaaa 12318045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 110 - 356
Target Start/End: Original strand, 31844533 - 31844779
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  31844533 ggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctacggatatatctttc 31844632  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  31844633 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatctgcaggtaaatccgtaggaaaagctaaaatttc 31844732  T
Q  310 tagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||||||||||||||||||| ||||||||||| ||| ||| |||||    
T  31844733 tagtaatggttgggtttgctagaaagaaagttggagttgagcctggg 31844779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 110 - 356
Target Start/End: Complemental strand, 6331888 - 6331642
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    |||||| |||| ||||||||||||  || ||||||||||||| ||||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||    
T  6331888 ggcggaaccaggaattttatagagcatgagcaaaaaatttatcgcaaaacgttacttccttccttcaaataatttcacatttcctacggatatatctttc 6331789  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  6331788 ctgcggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaaaatccggaggtaaacccgcaggaaaagctaaaatttc 6331689  T
Q  310 tagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    |||||||||||| |||||||||| ||||||||| || |||| |||||    
T  6331688 tagtaatggttgagtttgctacatagaaagttggagccgagcctggg 6331642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 110 - 342
Target Start/End: Complemental strand, 8239495 - 8239261
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| |||||||||||  || |||||||||||||| ||||||||||||||| |||||  |||||| |||||||||||||||||||||||||||    
T  8239495 ggcggagccaggaattttatagaacctaggcaaaaaatttatcgcaaaacgttacttccttcctatgaataatttcacatttcctacggatatatctttc 8239396  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaa--atgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatt 307  Q
    ||||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |    
T  8239395 ctgcggaacctaaatccttggcaaaatctgcaggaaatatatatttcctgcggaatttacacaaaaatccgcaggtaaatctgcaggaaaagctaaaaat 8239296  T
Q  308 tctagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||||| ||| || |||||||||||||||    
T  8239295 tctagtaatggtagggattactacaaagaaagttg 8239261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 110 - 342
Target Start/End: Complemental strand, 14727553 - 14727300
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct--------------- 194  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||                   
T  14727553 ggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttcaca 14727454  T
Q  195 ------acggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatc 288  Q
          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  14727453 tttcctacagatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcaggtaaatc 14727354  T
Q  289 cgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  14727353 cgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttg 14727300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 110 - 342
Target Start/End: Original strand, 33468863 - 33469074
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||    
T  33468863 ggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacagatatatctttc 33468962  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||| ||                     |||||||||||||||||||||||||||||    
T  33468963 ctgcggaacctaaatccttgacaaaatttgcaggaaatgtgtttcctacg---------------------ggtaaatccgcaggaaaagctaaaatttc 33469041  T
Q  310 tagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||||||||||  ||||||| |||||||||||    
T  33469042 tagtaatggttgaatttgctataaagaaagttg 33469074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 110 - 356
Target Start/End: Original strand, 27583909 - 27584160
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc-----------------tttcctgcgaataaattcacatttc 192  Q
    ||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||                 ||||||||  |||| ||||||||||    
T  27583909 ggcggagccaggaattttatagagcctgagcaaaaaatttatcgcaaaacgttacttcctgcgaataatttcacatttcctgcagataatttcacatttc 27584008  T
Q  193 ctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgca 292  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||    
T  27584009 ctacggatatatctttcctggggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgca 27584096  T
Q  293 ggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||||| || |||| |||||    
T  27584097 ggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagcctggg 27584160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 110 - 342
Target Start/End: Complemental strand, 27460901 - 27460678
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    ||||||||||  |||||||||||| ||||| ||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||| | |||| | ||       
T  27460901 ggcggagccaagaattttatagagcctggg-aaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttcaca 27460803  T
Q  206 tttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaa 305  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||            ||||||||| ||||||||||||    
T  27460802 tttcctacggaacctaaatccttggcaaaatctgcaggaaatgtgtttccttcggaatttacacaa------------aaatccgcaagaaaagctaaaa 27460715  T
Q  306 tttctagtaatggttgggtttgctacaaagaaagttg 342  Q
     ||||||||||||||||| ||||||||||||||||||    
T  27460714 attctagtaatggttgggcttgctacaaagaaagttg 27460678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 178 - 342
Target Start/End: Original strand, 25011518 - 25011669
Alignment:
Q  178 ataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatcc 277  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          
T  25011518 ataatttcacatttcctacggatatatctttc-tgcggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcggaatttacacaa------ 25011610  T
Q  278 gcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
          |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  25011611 ------aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttg 25011669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 168 - 342
Target Start/End: Complemental strand, 25007608 - 25007446
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||| ||||||||||||    
T  25007608 tttcctgcagataaattcacatttcctacggatatatctttcctgcagaacctaaatccttggcaaaatctgcaggaaatacatttcttgcggaatttac 25007509  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||            |||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  25007508 acaa------------aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 25007446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 168 - 342
Target Start/End: Original strand, 37153961 - 37154123
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  37153961 tttcctgcagataaattcacatttcctacggatatatctttcctgtggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttac 37154060  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||            |||||||||||||||||||||| ||||||||||||| | | || |||||||||||||||    
T  37154061 acaa------------aaatccgcaggaaaagctaaaaattctagtaatggtagagcttcctacaaagaaagttg 37154123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 168 - 342
Target Start/End: Complemental strand, 44305556 - 44305394
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  44305556 tttcctgcagataaattcacatttcctacggatatatctttcctgtggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttac 44305457  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||            |||||||||||||||||||||| |||||||||| || ||| || |||||||||||||||    
T  44305456 acaa------------aaatccgcaggaaaagctaaaaattctagtaattgtagggcttcctacaaagaaagttg 44305394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 48940438 - 48940561
Alignment:
Q  219 ctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatgg 318  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||    
T  48940438 ctaaatccttgacaaaatctgcatgaaatgtgtttcctgcggaatttacacaaaaatccgcaaataaatccgcaggaaaagctaaaagttctagtaatgg 48940537  T
Q  319 ttgggtttgctacaaagaaagttg 342  Q
     | || ||||||||||||| ||||    
T  48940538 cttggcttgctacaaagaatgttg 48940561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 34459342 - 34459231
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcct 211  Q
    ||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||  ||||||| |||||||||||||| |||||||||||| |    
T  34459342 cggagccaggaattttatagagtctgggcaaaaaatttatcacaaaacgttacttccttcccacgaataatttcacatttcctacagatatatctttctt 34459243  T
Q  212 gcggaacctaaa 223  Q
    ||||| ||||||    
T  34459242 gcggatcctaaa 34459231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 49898609 - 49898498
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcct 211  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||| ||||| || ||||||||||||| ||||||||||||  ||||||||||||| |    
T  49898609 cggagccagaaattatatagagtctgggcaaaaaatttatcgcaaaatgttacgtccttcctgcgaataatttcacatttcctgtggatatatctttctt 49898510  T
Q  212 gcggaacctaaa 223  Q
    ||||| ||||||    
T  49898509 gcggatcctaaa 49898498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 9527276 - 9527181
Alignment:
Q  114 gagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||   ||||||||||||| ||||||||||||| |||||||||||||    
T  9527276 gagccagaaattttatagagtatgggcaaaaaatttatcgcaaaacgttactgtcttcctgcgaataatttcacatttcctatggatatatctttc 9527181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 1428404 - 1428468
Alignment:
Q  182 attcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1428404 attcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 1428468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 24745508 - 24745410
Alignment:
Q  216 aacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaa 315  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || |||||||||||| ||  |||||||||| |||||||||    
T  24745508 aacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaaaccacaggtaaatccgtag--aaagctaaaaattctagtaa 24745411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 4774195 - 4774104
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||  ||||||||||||| |||||||||| | ||||||    
T  4774195 ggcggagccagaaattttatagagtctgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttcttgcggata 4774104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 9527143 - 9527027
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |            |||||||||||||||||||||| |||||||    
T  9527143 ggaacctaaatccttggcaaaatctgcaggagatgtgtttcctgtgaaatttacacca------------aaatccgcaggaaaagctaaaagttctagt 9527056  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||||| |||| ||||||||||||||||||    
T  9527055 aatggctgggcttgctacaaagaaagttg 9527027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 24646151 - 24646036
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||            |||||| ||||||||||||||| |||||||    
T  24646151 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatgtacacaa------------aaatccacaggaaaagctaaaagttctagt 24646064  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    |||||||| | ||||||||||||||||||    
T  24646063 aatggttgag-ttgctacaaagaaagttg 24646036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 44238875 - 44238992
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||||| || |||||||||||||||| ||||||||| |||           ||||||||| ||||||||||||||||||||    
T  44238875 ggaacctaaatccttggcaaaatctacaagaaatgtgtttcctgcagaatttacaaaaa-----------aaatccgcaagaaaagctaaaatttctagt 44238963  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||||| |||| || |||||||||||||||    
T  44238964 aatggctgggctttctacaaagaaagttg 44238992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 25011429 - 25011500
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataa 181  Q
    ||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||| |||||||||    
T  25011429 ggcggcgccagaaattttatagaatctgggcaaaaaaattatcgcaaaacgttacttccttcatgcgaataa 25011500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 1428312 - 1428382
Alignment:
Q  111 gcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataa 181  Q
    |||||||||| |||||||||||| ||||||||||||||||  ||||||||||||||| ||||| |||||||    
T  1428312 gcggagccaggaattttatagagcctgggcaaaaaatttaccgcaaaacgttacttccttcctacgaataa 1428382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 6801980 - 6802089
Alignment:
Q  114 gagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcctgc 213  Q
    |||| |||||||||||||||| ||| |||||||||||| ||||||||||| ||| | | |||| |||| | |||||||||| | |||||| ||||||||     
T  6801980 gagcaagaaattttatagagtttggacaaaaaatttatcgcaaaacgttatttcctacatgcggataattgcacatttcctgcagatatacctttcctga 6802079  T
Q  214 ggaacctaaa 223  Q
    ||| ||||||    
T  6802080 ggatcctaaa 6802089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 24646270 - 24646181
Alignment:
Q  111 gcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggat 200  Q
    |||||||||| |||||||||||| |||||||||||| ||||  ||||| |||||||| ||| ||||||||| |||| ||||||| |||||    
T  24646270 gcggagccaggaattttatagagcctgggcaaaaaaattatctcaaaatgttacttccttcatgcgaataatttcaaatttcctgcggat 24646181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 25007687 - 25007630
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||    
T  25007687 ggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttc 25007630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 37153882 - 37153939
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||    
T  37153882 ggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttc 37153939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 4641941 - 4642020
Alignment:
Q  122 aattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    |||||||||||| | | |||||||||  || ||||||||||||||| ||||||||||||| |||||||||||| ||||||    
T  4641941 aattttatagagcccgtgcaaaaaatcaatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggata 4642020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 24745628 - 24745540
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggat 200  Q
    ||||||||||| ||||||||||||||||||||||||| |||| ||  || |||||||  ||| ||||||||| |||||||||||| |||||    
T  24745628 ggcggagccaggaattttatagagtctgggcaaaaaaattatcgc--aatgttactttcttcatgcgaataatttcacatttcctgcggat 24745540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 356
Target Start/End: Complemental strand, 4774085 - 4773975
Alignment:
Q  234 aatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaa 333  Q
    ||||||||||||||||||||||||||||||||||| ||            | |||||||||||||||||||| |||||||||||| |||| |||||||||    
T  4774085 aatctgcaggaaatgtgtttcctgcggaatttacataa------------atatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaa 4773998  T
Q  334 agaaagttgaagtcgaggctggg 356  Q
    | ||| ||| ||| ||| |||||    
T  4773997 aaaaaattggagttgagtctggg 4773975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 34459206 - 34459141
Alignment:
Q  215 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgca 280  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||  |||||||    
T  34459206 gaacttaaatccttggcaaaatctgcaggaaatgtgtttcctacggaaattccacaacaatccgca 34459141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 44305635 - 44305578
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||||||| |||||||||||| |||||||||||| |||| |||||||||||||||    
T  44305635 ggcggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttc 44305578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 6802113 - 6802247
Alignment:
Q  214 ggaacctaaatccttggcaaaatc----tgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    ||||||||||||||||||||||||     ||||||||||||||||||| |||||||||| ||            ||||||||||||||||| | || |||    
T  6802113 ggaacctaaatccttggcaaaatccgcaggcaggaaatgtgtttcctgtggaatttacagaa------------aaatccgcaggaaaagcgagaagttc 6802200  T
Q  310 tagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||||||| || | |||||||||||||||| ||||| ||| |||||    
T  6802201 tagtaatggctgagcttgctacaaagaaagtagaagttgagcctggg 6802247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 340
Target Start/End: Original strand, 4642089 - 4642201
Alignment:
Q  216 aacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaa 315  Q
    |||||||||||||| ||||||||||| ||||||| ||||||| | |||||||| ||            |||||||||||||||||||||| |||||||||    
T  4642089 aacctaaatccttgacaaaatctgcaagaaatgtatttcctgtgaaatttacataa------------aaatccgcaggaaaagctaaaagttctagtaa 4642176  T
Q  316 tggttgggtttgctacaaagaaagt 340  Q
    ||| ||   ||||||||||||||||    
T  4642177 tggctgaacttgctacaaagaaagt 4642201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 17875626 - 17875579
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaa 157  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  17875626 ggcggagccataaattttatagagtctgggcaaaaaatttatcgcaaa 17875579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 1428455 - 1428513
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||| ||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||    
T  1428455 aaatctgcaggaaaaactaaaaattctagtaatggtagggcttgctacaaagaaagttg 1428513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 4642008 - 4642063
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaa 223  Q
    ||||||||| |||| |||| ||||||| ||||||||||||||||||||| ||||||    
T  4642008 tttcctgcggataatttcatatttcctgcggatatatctttcctgcggatcctaaa 4642063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 42817819 - 42817784
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaa 145  Q
    ||||||||||| ||||||||||||||||||||||||    
T  42817819 ggcggagccaggaattttatagagtctgggcaaaaa 42817784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 48940328 - 48940378
Alignment:
Q  141 aaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacattt 191  Q
    |||||| |||||||||||| ||| |||||| |||||||||| |||||||||    
T  48940328 aaaaaaattattgcaaaactttatttctttactgcgaataatttcacattt 48940378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 49898455 - 49898397
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||| |||||||||||||||| |||||||||||| ||   ||| ||||||||||||||    
T  49898455 aaatctgcaggaaaagctaaaacttctagtaatggctgaacttgttacaaagaaagttg 49898397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 49898471 - 49898442
Alignment:
Q  217 acctaaatccttggcaaaatctgcaggaaa 246  Q
    ||||||||||||||||||||||||||||||    
T  49898471 acctaaatccttggcaaaatctgcaggaaa 49898442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 4163586 - 4163546
Alignment:
Q  105 acaggggcggagccagaaattttatagagtctgggcaaaaa 145  Q
    |||| |||||||||||||||||||||||||| | |||||||    
T  4163586 acagtggcggagccagaaattttatagagtccgagcaaaaa 4163546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 33169338 - 33169370
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaa 246  Q
    |||||||||||||||||||||||| ||||||||    
T  33169338 ggaacctaaatccttggcaaaatccgcaggaaa 33169370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 110 - 342
Target Start/End: Original strand, 26370934 - 26371166
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  26370934 ggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttc 26371033  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  26371034 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaatccgcagaaaatgctaaaatttc 26371133  T
Q  310 tagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||||||||||| ||||||| ||| |||||||    
T  26371134 tagtaatggttggatttgctaaaaataaagttg 26371166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 110 - 342
Target Start/End: Complemental strand, 37516850 - 37516618
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  37516850 ggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttc 37516751  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||| |||    
T  37516750 ctgcggaacctagatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaattccgcaggtaaatccgcaggaaaagctaaaaattc 37516651  T
Q  310 tagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||||||  ||||||||||||||||||    
T  37516650 tagtaatggttggacttgctacaaagaaagttg 37516618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 168 - 356
Target Start/End: Complemental strand, 7501106 - 7500918
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7501106 tttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttac 7501007  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||| |||||    
T  7501006 acaaacatccgcatgtaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctggg 7500918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 114 - 342
Target Start/End: Original strand, 25391741 - 25391957
Alignment:
Q  114 gagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcctgc 213  Q
    ||||||| ||||||||||||  |||||||||||||||| ||||||| ||||||| ||| | ||||||| |||||||||||||||||||||||||||||||    
T  25391741 gagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacattacttccttcttacgaataatttcacatttcctacggatatatctttcctgc 25391840  T
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||| |||| |||||   |||| ||||||||||||||||            |||||||||||||||||||||| |||||||    
T  25391841 ggaacctaaatccttggcaaaatttgcaagaaatacatttcttgcggaatttacacaa------------aaatccgcaggaaaagctaaaaattctagt 25391928  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    |||||| ||| ||||||| ||||||||||    
T  25391929 aatggtagggcttgctacgaagaaagttg 25391957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 168 - 342
Target Start/End: Complemental strand, 53652048 - 53651886
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  53652048 tttcctgcagataaattcacatttcctacggatatatctttcctgcagaacctaaatccttggcaaaatctgcaggaaatgcatttcctgcggaatttac 53651949  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||            |||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  53651948 acaa------------aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 53651886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 168 - 342
Target Start/End: Complemental strand, 44047734 - 44047572
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  44047734 tttcctgcagataaattcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttac 44047635  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||            |||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  44047634 acaa------------aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 44047572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 168 - 338
Target Start/End: Complemental strand, 14461215 - 14461057
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||    
T  14461215 tttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggacatacatttcctgcggaatttac 14461116  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    | ||            |||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||    
T  14461115 ataa------------aaatccgcaggaaaagttaaaaattctagtaatggtagggcttgctacaaagaaa 14461057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 168 - 342
Target Start/End: Complemental strand, 28311427 - 28311265
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||   |||||||||||||||||    
T  28311427 tttcctgcagataaattcacatttcctacggatatatctttccagcggaacctaaatccttggcaaaatctacaggaaatacatttcctgcggaatttac 28311328  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||            ||||||||||||||| |||||| ||||||||||||| ||| ||| ||||||||||||||    
T  28311327 acaa------------aaatccgcaggaaaaactaaaaattctagtaatggtagggcttgttacaaagaaagttg 28311265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 215 - 340
Target Start/End: Original strand, 41218389 - 41218514
Alignment:
Q  215 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagta 314  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||||||||| ||||||||    
T  41218389 gaacctaaattcttggcaaaatcggcaggaaatgtgtttcctgcggaatttagacaaaaatgcgcaagtaaatccgcaggaaaagctaaaagttctagta 41218488  T
Q  315 atggttgggtttgctacaaagaaagt 340  Q
    |||| |||| ||||||||| ||||||    
T  41218489 atggctgggcttgctacaaggaaagt 41218514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 338
Target Start/End: Complemental strand, 26278564 - 26278343
Alignment:
Q  105 acaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatat 204  Q
    |||| |||||||| |||||||||||||||| | ||||||||| |||| |||||| | |||||| ||| ||||||||| ||||||||||||||| |   ||    
T  26278564 acagtggcggagcaagaaattttatagagtttaggcaaaaaaattatcgcaaaatgatacttccttcttgcgaataatttcacatttcctacgaa---at 26278468  T
Q  205 ctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaa 304  Q
    ||     || | |    |||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||| |||||||||||    
T  26278467 ct-----gcagga----aatcctaggcaaaatctgcaggaaatgtgtttcctccggaatttacataaaaatccgtaggtaaatccgcatgaaaagctaaa 26278377  T
Q  305 atttctagtaatggttgggtttgctacaaagaaa 338  Q
    | |||||||||||| | || ||||| ||||||||    
T  26278376 aattctagtaatggctaggcttgctccaaagaaa 26278343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 178 - 342
Target Start/End: Complemental strand, 12909968 - 12909808
Alignment:
Q  178 ataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtg--------tttcctgcggaatttacac 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |        |||||||||||||||||||    
T  12909968 ataaattcacatttcctacggatatatctttcctgcggaacctaaatctttggcaaaatctgcaggaaatcagaaaatacatttcctgcggaatttacac 12909869  T
Q  270 aaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||            |||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  12909868 aa------------aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 12909808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 110 - 345
Target Start/End: Complemental strand, 53988061 - 53987849
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaa-tttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatcttt 208  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||||| |||| ||          
T  53988061 ggcggagccagaaattttatagagtccgggcaaaaaaatttattgcaaaatgttacttccttcctgcgaataatttcacatttcctgcgga-at------ 53987969  T
Q  209 cctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaattt 308  Q
     |||| |     ||||||| |||||||||||||||||||||||||||||||||||||||| ||            |||||||||||||||||||||| ||    
T  53987968 -ctgcag----gaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataa------------aaatccgcaggaaaagctaaaagtt 53987886  T
Q  309 ctagtaatggttgggtttgctacaaagaaagttgaag 345  Q
    ||||||||||||| | |  ||||||||||| ||||||    
T  53987885 ctagtaatggttgagctgactacaaagaaaattgaag 53987849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 221 - 338
Target Start/End: Complemental strand, 35077321 - 35077204
Alignment:
Q  221 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggtt 320  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||||| ||||||||||| |||| | ||||| |    
T  35077321 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaattcccaggtaaatccgcagaaaaagctaaaagttctggcaatggct 35077222  T
Q  321 gggtttgctacaaagaaa 338  Q
      | ||||||||||||||    
T  35077221 acgcttgctacaaagaaa 35077204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 33179141 - 33179257
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||| ||||||||||||||||| |||||||    
T  33179141 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaattcgcaggaaaagctaaaagttctagt 33179228  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||||| |||  |||||||||| |||||||    
T  33179229 aatggctggacttgctacaaaaaaagttg 33179257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 215 - 345
Target Start/End: Original strand, 41358632 - 41358763
Alignment:
Q  215 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaattt-acacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||| ||||||||||| |||||||||||||||   | ||||||| ||||||| ||||||| ||||||||| ||||||||| | || ||||| |    
T  41358632 gaacctaaatcattggcaaaatccgcaggaaatgtgtttttggaggaattttacacaaatatccgcaagtaaatccgtaggaaaagcgagaagttctaat 41358731  T
Q  314 aatggttgggtttgctacaaagaaagttgaag 345  Q
    |||||||| |||||||||||||||||| ||||    
T  41358732 aatggttgagtttgctacaaagaaagtagaag 41358763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 43700164 - 43700242
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 246  Q
    ||||||||  |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43700164 tttcctgcagataatttcacatttccaacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaa 43700242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 33178984 - 33179065
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacattt 191  Q
    ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  33178984 ggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacattt 33179065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 41218247 - 41218331
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  41218247 ggcggagtcaggaattttatagagtctaggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 41218331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 53068346 - 53068278
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  53068346 ggaacctaaattcttggcaaaatctgcaggaaatgtgtttcctgtggaatttacacaaaaatccgcagg 53068278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 43700085 - 43700169
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||||| ||||||||||||||||  |||| ||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||    
T  43700085 ggcggagtcagaaattttatagagcttgggtaaaaaatatatcgcaaaacgttacttcttttctgcgaataatttcacatttcct 43700169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 43700229 - 43700287
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  43700229 aaatctgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttg 43700287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 28311506 - 28311449
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||    
T  28311506 ggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacattacttc 28311449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 356
Target Start/End: Complemental strand, 44625744 - 44625672
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||| || |||| |||||    
T  44625744 aaatctgcaggaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctggg 44625672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 44047812 - 44047750
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcct 173  Q
    ||||||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||    
T  44047812 ggcggagccaggaatttt-tagagtctggacaaaaaatttatcgcaaaacgttacttctttcct 44047750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 9600447 - 9600386
Alignment:
Q  221 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  9600447 aaatcctaagcaaaatctgcaggaaatgtgtttcctgcagaatttacataaaaatccgcagg 9600386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 12910055 - 12909998
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||    
T  12910055 ggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaatcgttacttc 12909998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 14461294 - 14461237
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||||||| |||||||||||| |||||||||||||||||  ||||||||||||||    
T  14461294 ggcggagccaggaattttatagagcctgggcaaaaaatttatcacaaaacgttacttc 14461237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 38239555 - 38239502
Alignment:
Q  216 aacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacac 269  Q
    |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  38239555 aacctaaatccttggcaaaatccgcagaaaatgtgtttcctgcagaatttacac 38239502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 53652127 - 53652073
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttac 164  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||    
T  53652127 ggcggagccaggaattttatagagtctggacaaaaaatttatcgcaaaacattac 53652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 9600396 - 9600342
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||||||||||||||| |||| |||||||||||| |||| || |||||||||||    
T  9600396 aaatccgcaggaaaagccaaaagttctagtaatggctgggattactacaaagaaa 9600342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 41358513 - 41358601
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggat 200  Q
    |||||||| ||||||||| |||||| ||| ||||||| |||| ||||||||||| ||| |||||||| |||| | |||||||||| |||||    
T  41358513 ggcggagcaagaaatttt-tagagt-tggacaaaaaaattatcgcaaaacgttatttccttcctgcggataattgcacatttcctgcggat 41358601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 53068288 - 53068230
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||||||||| ||||| |||||||||||| |||  ||| ||||||||||||||    
T  53068288 aaatccgcaggaaaagttaaaacttctagtaatggctggacttgttacaaagaaagttg 53068230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 30172693 - 30172616
Alignment:
Q  221 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaa 298  Q
    |||||||| |||||||||| ||||||  | |||||||| ||||||| || || | |||||||||| ||||||||||||    
T  30172693 aaatccttagcaaaatctgtaggaaaactatttcctgcagaatttataccaaaagccgcaggtaattccgcaggaaaa 30172616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 36870023 - 36869966
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa 271  Q
    |||||||||||||||| |||||||   |||||| | ||||||||||||||||||||||    
T  36870023 ggaacctaaatccttgacaaaatccttaggaaacgggtttcctgcggaatttacacaa 36869966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 51408472 - 51408517
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaa 157  Q
    ||||||||||||||||||||| |||||||||||| ||||| |||||    
T  51408472 cggagccagaaattttatagaatctgggcaaaaagtttatcgcaaa 51408517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 298
Target Start/End: Complemental strand, 4293401 - 4293318
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaa 298  Q
    ||||||||| ||||| |||||||| |||||||||| ||||||||||||| || ||| ||  ||||||| | | ||||||||||||    
T  4293401 ggaacctaagtccttagcaaaatccgcaggaaatg-gtttcctgcggaaatttcaccaaactccgcagatgattccgcaggaaaa 4293318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 7501185 - 7501129
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttactt 166  Q
    ||||||||||| |||||||||||| || |  ||||||||||| ||||||||||||||    
T  7501185 ggcggagccaggaattttatagagcctcgataaaaaatttatcgcaaaacgttactt 7501129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 43447660 - 43447620
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttc 254  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  43447660 ggaagctaaatccttggcaaaatctgcaggaaacgtgtttc 43447620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 4245823 - 4245898
Alignment:
Q  220 taaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcagga 295  Q
    ||||||||||| |||||| ||||||||   || ||||||||||||| |||  | |||||||||||| |||||||||    
T  4245823 taaatccttggtaaaatccgcaggaaacaggtgtcctgcggaattttcacccaaatccgcaggtaattccgcagga 4245898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 31989341 - 31989295
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaa 156  Q
    |||| |||||||||||| |||||| ||||||||||||||||| ||||    
T  31989341 ggcgaagccagaaatttcatagagcctgggcaaaaaatttatcgcaa 31989295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 47511667 - 47511729
Alignment:
Q  220 taaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    |||||| || |||||||| |||||||||||||||||| |  |||||| ||||| |||||||||    
T  47511667 taaatctttagcaaaatccgcaggaaatgtgtttccttcaaaatttatacaaaaatccgcagg 47511729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 497453 - 497401
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaattta 266  Q
    ||||||||||||||| |||||||| | ||||||||||||| || |||| ||||    
T  497453 ggaacctaaatccttagcaaaatccgtaggaaatgtgtttgctacggatttta 497401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 41199946 - 41199978
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaa 246  Q
    |||||||||||||||||||||||| ||||||||    
T  41199946 ggaacctaaatccttggcaaaatccgcaggaaa 41199978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 122 - 355
Target Start/End: Original strand, 26722863 - 26723096
Alignment:
Q  122 aattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcctgcggaaccta 221  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  26722863 aattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttacggatatatctttcctgcggaaccta 26722962  T
Q  222 aatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttg 321  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26722963 aatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggtaaatccgtaggaaaagctaaaatttctagtaatggttg 26723062  T
Q  322 ggtttgctacaaagaaagttgaagtcgaggctgg 355  Q
    | ||||||||||| ||||||| || |||| ||||    
T  26723063 gatttgctacaaaaaaagttggagccgagcctgg 26723096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 168 - 342
Target Start/End: Original strand, 35300399 - 35300573
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  35300399 tttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttac 35300498  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||| |||||||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||||||||||||    
T  35300499 acaaaaatccgcaggtaaatccgcaggaaaagctaaacattctagtaatggtagggcttgctacaaagaaagttg 35300573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 110 - 338
Target Start/End: Original strand, 7873112 - 7873349
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||| |||| || ||||| |||||||||||| |||||| | ||       
T  7873112 ggcggagcctgaaattttatagagtctgggcaaaaaaattatcgcaaaatgttacttccttcccgctaataatttcacatttcctgcggataatttcaca 7873211  T
Q  206 tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagc 300  Q
    |||| || |||| ||     ||||||| |||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||    
T  7873212 tttcatgtggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaacccgcaggtaaatccgcagaaaaagc 7873311  T
Q  301 taaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  7873312 taaaagttctagtaatggttgggcttgctacaaagaaa 7873349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 122 - 342
Target Start/End: Original strand, 41759531 - 41759753
Alignment:
Q  122 aattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatt---tcctacggatatatctttcctgcggaac 218  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||| |    ||||| ||   || ||   || ||||||    
T  41759531 aattttatagagtctgggcaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcacctcggatcctatggtgttacctcaact-cggaac 41759629  T
Q  219 ctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatgg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || ||||||| ||| |||||||||||| ||||||||||||    
T  41759630 ctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacaccaaaatccacaagtaaatctgcaagaaaagctaaaagttctagtaatgg 41759729  T
Q  319 ttgggtttgctacaaagaaagttg 342  Q
     |||| ||||||||||||||||||    
T  41759730 ctgggcttgctacaaagaaagttg 41759753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 110 - 356
Target Start/End: Original strand, 5991312 - 5991564
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    ||||||| | |||||||||||||| |||||||||||| |||| |||||| |||||||| ||||||||||||| || ||||||| | |||||| | ||       
T  5991312 ggcggagtcggaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataattttacatttcttgcggataatttcaca 5991411  T
Q  206 tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagc 300  Q
    |||||||| ||| ||     ||||||| |||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||| |    
T  5991412 tttcctgcagaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaac---cgcaggtaaatccgcaggaaaaac 5991508  T
Q  301 taaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||| |||||||||||| |||| |||||||||||||| ||| ||| ||| |||||    
T  5991509 taaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagcctggg 5991564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 110 - 338
Target Start/End: Original strand, 22206578 - 22206815
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    |||||||| ||||||||||||||| |||||||| ||| |||| |||||| |||||||| ||||||||||||| |||||||||||| |||||| | ||       
T  22206578 ggcggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcggataatctcaca 22206677  T
Q  206 tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagc 300  Q
    |||||||||||| ||     |||||||  | ||||||||||||||||||||||||||||||||||||| |||||  || |||||||||||||||||||||    
T  22206678 tttcctgcggaatctgcaggaaatcctaagtaaaatctgcaggaaatgtgtttcctgcggaatttacataaacactcgtaggtaaatccgcaggaaaagc 22206777  T
Q  301 taaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||| || ||||||||  |||| ||||||||||||||    
T  22206778 taaaaattatagtaatgcctgggcttgctacaaagaaa 22206815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 110 - 338
Target Start/End: Complemental strand, 22228161 - 22227924
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    |||||||| ||||||||||||||| |||||||| ||| |||| |||||| |||||||| ||||||||||||| |||||||||||| |||||| | ||       
T  22228161 ggcggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcggataatctcaca 22228062  T
Q  206 tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagc 300  Q
    |||||||||||| ||     |||||||  | ||||||||||||||||||||||||||||||||||||| |||||  || |||||||||||||||||||||    
T  22228061 tttcctgcggaatctgcaggaaatcctaagtaaaatctgcaggaaatgtgtttcctgcggaatttacataaacactcgtaggtaaatccgcaggaaaagc 22227962  T
Q  301 taaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||| || ||||||||  |||| ||||||||||||||    
T  22227961 taaaaattatagtaatgcctgggcttgctacaaagaaa 22227924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 168 - 298
Target Start/End: Original strand, 23704440 - 23704570
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  23704440 tttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgttttcggcggaatttac 23704539  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaa 298  Q
    ||||| |||| ||||||||||||||||||||    
T  23704540 acaaaaatccacaggtaaatccgcaggaaaa 23704570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 214 - 343
Target Start/End: Complemental strand, 3012408 - 3012279
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||    
T  3012408 ggaacctatatccttggcaaaatctgcaggaagtgtgtttcctgcggaatgtacacaaaaatcggcaggtaaatccgcaggaaaagctaaaagttctagt 3012309  T
Q  314 aatggttgggtttgctacaaagaaagttga 343  Q
    |||||||||| |||||||||||||||||||    
T  3012308 aatggttgggcttgctacaaagaaagttga 3012279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 3012545 - 3012432
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||||||||||| ||||||||||||||    
T  3012545 ggcggagccagaaattttatagagtctgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttcacatttcctgcggatatatctttc 3012446  T
Q  210 ctgcggaacctaaa 223  Q
    ||||||| ||||||    
T  3012445 ctgcggatcctaaa 3012432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 338
Target Start/End: Original strand, 25688103 - 25688319
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    |||||||||||||||||||||||| ||||| |||||| |||| | |||| |||||||| || ||| |||||| |||||||||||| ||||   ||||       
T  25688103 ggcggagccagaaattttatagagcctgggtaaaaaaattatcgtaaaatgttacttcctttctgtgaataatttcacatttcctgcgga---atct--- 25688196  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
      || | |    |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||  ||||||||||| |||||||||||||||| ||     
T  25688197 --gcagga----aatcctaggcaaaatctgcaggaaatatgtttcctgcggaatttacataaacatttgcaggtaaatctgcaggaaaagctaaaagttt 25688290  T
Q  310 tagtaatggttgggtttgctacaaagaaa 338  Q
    ||||||||| || | ||||||||||||||    
T  25688291 tagtaatggctgagcttgctacaaagaaa 25688319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 19377490 - 19377365
Alignment:
Q  217 acctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaat 316  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||| |||||| ||||| | ||||||||    
T  19377490 acctaaatccttggcaaaatctgcaggaaatgtatttccttcggaatttccacaaacatccgcaggtaaatctgcaagaaaagttaaaactactagtaat 19377391  T
Q  317 ggttgggtttgctacaaagaaagttg 342  Q
    || |||  ||| ||||||||||||||    
T  19377390 ggctggagttgttacaaagaaagttg 19377365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 318
Target Start/End: Complemental strand, 4843402 - 4843298
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||     
T  4843402 ggaacctaaatccttggcaaaatctgcatgaaatgtgtttcatgcggaatgtacacaaatatccgtaggtaaatccgaaggaaaagctaaaagttctaga 4843303  T
Q  314 aatgg 318  Q
    |||||    
T  4843302 aatgg 4843298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 117 - 282
Target Start/End: Original strand, 38991076 - 38991245
Alignment:
Q  117 ccagaaattttatagagtctgggcaaaaaatttattgcaaaacgtta-cttctttcctgcgaataaattcacatttcctacggata-tatc---tttcct 211  Q
    |||| |||||||||||||| || ||||||| |||| ||||||||||| |||||| ||||||||||| |||| |||||||||| ||| | ||   ||| ||    
T  38991076 ccaggaattttatagagtccggacaaaaaagttatcgcaaaacgttatcttctt-cctgcgaataatttcatatttcctacgaataatttcacattttct 38991174  T
Q  212 gcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||| |||||||||    
T  38991175 gcggatcctaaatccttggcaaaatctgcaggaaatgtgtttccaacggaatttatacaaaaatccgcagg 38991245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 28694057 - 28694184
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| ||| |||| | ||| |||||||    
T  28694057 ggaacctaaatcctgggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcagctaaatccg-aggcaaagtttaaagttctagt 28694155  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    |||||  |   ||||||||||||||||||    
T  28694156 aatggcggaacttgctacaaagaaagttg 28694184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 42439462 - 42439553
Alignment:
Q  118 cagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| ||||||||| |||||||||||||||||    
T  42439462 cagaaattttatagggtctgggcaaaaaatttatcgcaaaacgttacttcttttctacgaataatttcacattttctacggatatatctttc 42439553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 814865 - 814978
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||| ||||||||| || ||||||||||||||    
T  814865 ggcggagccaggaattatatagagtctgggcaaaaaaattatcgcaaaacgttacttcattcctgctaataatttcacattttctgcggatatatctttc 814964  T
Q  210 ctgcggaacctaaa 223  Q
     ||| || ||||||    
T  814965 gtgcagatcctaaa 814978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 21932634 - 21932718
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||||| ||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |||||||    
T  21932634 ggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttcct 21932718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 216 - 356
Target Start/End: Original strand, 21932798 - 21932925
Alignment:
Q  216 aacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaa 315  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||             ||||||||||| ||||| || ||||||    
T  21932798 aacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacacaaatat-------------cgcaggaaaagttaaaagttttagtaa 21932884  T
Q  316 tggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    |||||||| |||||||||||||||||| ||| ||| |||||    
T  21932885 tggttgggcttgctacaaagaaagttggagttgagcctggg 21932925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 38129010 - 38129094
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaa 298  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||||||| | |||||||||    
T  38129010 ggaacctaaatccttggcaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatccgcaggtaaaactgcaggaaaa 38129094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 21688211 - 21688145
Alignment:
Q  216 aacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21688211 aacctaaatccttcgcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagg 21688145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 4843531 - 4843452
Alignment:
Q  122 aattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||||||||  || ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  4843531 aattttatagagcttgagcaaaaaatttatcgcaaaacgttacttctttcctgcgaataatttcacatttcctgcggata 4843452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 38128876 - 38128986
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcctg 212  Q
    |||||||||||||||||| | ||| |||||||| ||||| ||||||||||| ||| |||||||  |||| |||||||||||| |  ||||||||||||||    
T  38128876 ggagccagaaattttataaaatctaggcaaaaattttatcgcaaaacgttatttccttcctgcagataatttcacatttcctgcacatatatctttcctg 38128975  T
Q  213 cggaacctaaa 223  Q
    |||| ||||||    
T  38128976 cggatcctaaa 38128986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 28693897 - 28693986
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||||| |||||||||||| |||||||||||| |||| ||||||| ||||||| || |||||||||| |||||||||||| ||||||    
T  28693897 cggagccaggaattttatagagcctgggcaaaaaaattatcgcaaaactttacttcctttctgcgaataatttcacatttcctccggata 28693986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 42439591 - 42439663
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaa 286  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  || |||||||||    
T  42439591 ggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctgcgaaatttacacaaaactctgcaggtaaa 42439663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 815002 - 815118
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||            ||||||| |||||||||||||| |||||||    
T  815002 ggaacctaaattcttggcaaaatctgcaagaaatgtattttctgcggaatttacacaa------------aaatccgtaggaaaagctaaaagttctagt 815089  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||||| | | |||||||||||||||||||    
T  815090 aatggctagatttgctacaaagaaagttg 815118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 282
Target Start/End: Complemental strand, 30852531 - 30852373
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcct 211  Q
    |||||||||||||||| |||| |||||| |||||| |||| |||||| ||| |||| ||||||||||||| |||||||||||| |||| ||       ||    
T  30852531 cggagccagaaattttttagaatctggggaaaaaaattatcgcaaaatgttgcttccttcctgcgaataatttcacatttcctgcgga-at-------ct 30852440  T
Q  212 gcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    || |     ||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||    
T  30852439 gcag----gaaatcctaggcaaaatctgaaggaaatgtgtttcctgcggaatttacataaaattccgcagg 30852373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 5850808 - 5850707
Alignment:
Q  237 ctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaaga 336  Q
    ||||||||||||||||| |||| ||||||||||||   || |||| ||||||||||||||||| ||||| |||||||||||| |||  ||| ||||||||    
T  5850808 ctgcaggaaatgtgttttctgcagaatttacacaacattctgcagataaatccgcaggaaaagttaaaacttctagtaatggctggacttgttacaaaga 5850709  T
Q  337 aa 338  Q
    ||    
T  5850708 aa 5850707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 41862238 - 41862351
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| ||||||||||| |||| | ||||||||||| |||||||  |||||| || ||||| |||| |  ||||||||| |||||||| |||||    
T  41862238 ggcggagccaggaattttatagaatctgagtaaaaaatttatcgcaaaacaatacttcatttctgcggataattatacatttcctgcggatatacctttc 41862337  T
Q  210 ctgcggaacctaaa 223  Q
    ||| ||| ||||||    
T  41862338 ctgtggatcctaaa 41862351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 19377623 - 19377554
Alignment:
Q  122 aattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacattt 191  Q
    |||| |||||||||||||||||||| |||| |||||| ||||  |||||||||||||||| |||||||||    
T  19377623 aattatatagagtctgggcaaaaaaattatcgcaaaatgttatgtctttcctgcgaataatttcacattt 19377554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 21688372 - 21688288
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||||| ||| ||||||||||| ||| ||||||||||||||  ||||| |||||| || | ||| |||||| ||||||||||||    
T  21688372 ggcggagtcaggaattttatagaatctaggcaaaaaatttatcacaaaatgttactgctattctgtgaataatttcacatttcct 21688288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 23704364 - 23704432
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataa 181  Q
    |||| ||| ||||||||||||| |||  ||||||||||| | ||||||||||||||||| |||||||||    
T  23704364 ggagtcaggaattttatagagtttggataaaaaatttatcgtaaaacgttacttctttcttgcgaataa 23704432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 27387163 - 27387215
Alignment:
Q  104 aacaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaa 156  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  27387163 aacagtggcggagccagaaatttcatagagcctgggcaaaaaatttatcgcaa 27387215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 19400294 - 19400247
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaa 157  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  19400294 ggcggagccagaaattttatagagcctgggcaaaaagtttatcgcaaa 19400247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 45197953 - 45197906
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaa 157  Q
    |||||||||||||||| |||||||| |||||||||||||||| |||||    
T  45197953 ggcggagccagaaattctatagagtgtgggcaaaaaatttatcgcaaa 45197906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 35300320 - 35300377
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||||||| ||||||||||||  |||| ||||||||||| | |||||||||||||    
T  35300320 ggcggagccaggaattttatagagcttgggaaaaaaatttatcgtaaaacgttacttc 35300377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 25491497 - 25491531
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaa 144  Q
    |||||||||||| ||||||||||||||||||||||    
T  25491497 ggcggagccagatattttatagagtctgggcaaaa 25491531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 6113616 - 6113579
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaat 147  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  6113616 ggcggagccagaaattttatacagtctgggaaaaaaat 6113579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 10224205 - 10224164
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttat 151  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||    
T  10224205 ggcggagccagaaattttacagagtctggacaaaaaaattat 10224164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 21688155 - 21688122
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatg 317  Q
    |||||||||||||||||||||| |||||||||||    
T  21688155 aaatccgcaggaaaagctaaaagttctagtaatg 21688122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 1756821 - 1756869
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaa 262  Q
    ||||||||||||| ||||||| || ||||||||  ||||||||||||||    
T  1756821 ggaacctaaatccatggcaaattccgcaggaaacatgtttcctgcggaa 1756869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 110 - 339
Target Start/End: Complemental strand, 10058740 - 10058511
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  10058740 ggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttc 10058641  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||| ||||||||||||| |||    
T  10058640 ctgcggaacctaaatccttggtaaaatctgctggaaatgtgtttcctgcggaatttacacaaaattccccaggtaaatccgcgggaaaagctaaaaattc 10058541  T
Q  310 tagtaatggttgggtttgctacaaagaaag 339  Q
    | |||||||||||| |||||||||||||||    
T  10058540 tcgtaatggttgggcttgctacaaagaaag 10058511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 110 - 356
Target Start/End: Complemental strand, 31364338 - 31364104
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||     
T  31364338 ggcggagccagaaattttatagagcatgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatctttt 31364239  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||| ||||||||||    
T  31364238 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaggaaaaactaaaatttc 31364151  T
Q  310 tagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||||||||||| ||||||||||||||||||| || |||| |||||    
T  31364150 tagtaatggttggatttgctacaaagaaagttggagccgagcctggg 31364104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 178 - 356
Target Start/End: Complemental strand, 4728693 - 4728515
Alignment:
Q  178 ataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatcc 277  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  4728693 ataatttcacatttcctacagatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttactcaaaaatcc 4728594  T
Q  278 gcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| || |||| |||||    
T  4728593 gcaggtaaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagtctggg 4728515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 110 - 342
Target Start/End: Complemental strand, 46645827 - 46645574
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct--------------- 194  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||                   
T  46645827 ggcggagccaggaattttatagagtctgggaaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtatataatttcata 46645728  T
Q  195 ------acggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatc 288  Q
          |||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  46645727 ttttctacggatatatctttcctgcggaacctaaactcttggcaaaatctgcatgaaatgtgtttcctgcagaatttacacaaaaatccgcaggtaaatc 46645628  T
Q  289 cgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  46645627 cgcagaaaaagctaaaaattctagtaatggttgggcttgctacaaaggaagttg 46645574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 186 - 342
Target Start/End: Complemental strand, 2576299 - 2576142
Alignment:
Q  186 acatttcctacggatatatctttcctgcggaacctaaatccttggcaaaa-tctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggta 284  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||| |||    
T  2576299 acatttcctacggatatatatttcctgcggaacctacatccttggcaaaaatctgcaggaaatgtgtttcctgcggaatttatacaaaaattcgcaagta 2576200  T
Q  285 aatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||| ||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||    
T  2576199 aattcgcagaaaaagctaaaaattcttgtaatggttgggcttgctacaaagaaagttg 2576142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 110 - 342
Target Start/End: Complemental strand, 4552409 - 4552168
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc---------------------tttcctgcgaataaattcaca 188  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||                     ||||||||  |||||||||||    
T  4552409 ggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacaaataatttcacatttcctgcagataaattcaca 4552310  T
Q  189 tttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||             |||||    
T  4552309 tttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacaca------------caaatc 4552222  T
Q  289 cgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  4552221 cgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 4552168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 110 - 338
Target Start/End: Complemental strand, 9003779 - 9003543
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata-tatc--- 205  Q
    ||||||| |||||||||||||||| |||| ||||||| |||| |||||| |||||||| ||| ||||||||| ||||||||||||| ||||| | ||       
T  9003779 ggcggagtcagaaattttatagagcctggacaaaaaaattatcgcaaaatgttacttccttcttgcgaataatttcacatttcctatggataatttcaca 9003680  T
Q  206 tttcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagc 300  Q
    |||||||||||| ||     ||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||     
T  9003679 tttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaa-atccgcaggtaaatccgaagaaaaagt 9003581  T
Q  301 taaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||| |||| ||||||  |||| ||||||||||||||    
T  9003580 taaaagttcttgtaatgactgggcttgctacaaagaaa 9003543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 168 - 356
Target Start/End: Complemental strand, 10715801 - 10715623
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgca-ggaaatgtgtttcctgcggaattta 266  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  10715801 tttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaattta 10715702  T
Q  267 cacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgc-tacaaagaaagttgaagtcgaggctggg 356  Q
    |||||            |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| || |||| |||||    
T  10715701 cacaa------------aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctggg 10715623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 168 - 356
Target Start/End: Complemental strand, 10929571 - 10929393
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgca-ggaaatgtgtttcctgcggaattta 266  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  10929571 tttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcagggcaatgtgtttcctgcggaattta 10929472  T
Q  267 cacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgc-tacaaagaaagttgaagtcgaggctggg 356  Q
    |||||            |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| || |||| |||||    
T  10929471 cacaa------------aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctggg 10929393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 110 - 338
Target Start/End: Complemental strand, 14044548 - 14044332
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||| || |||||| |||||| |||||||||||| |||| ||||         
T  14044548 ggcggagccagaaattttatagagtatgggcaaaaaaattatcgcaaaatgttacctccttcctgagaataatttcacatttcctgcgga-atat----- 14044455  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
      || | |    |||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||     
T  14044454 --gcagga----aatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaattcgcaggtaaatccgcaggaaaagctaaaaattt 14044361  T
Q  310 tagtaatggttgggtttgctacaaagaaa 338  Q
    | ||||||| | || ||||||||||||||    
T  14044360 tcgtaatggcttggcttgctacaaagaaa 14044332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 25237675 - 25237547
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||| |||||||    
T  25237675 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaattccgcaggtaaatccgcagaaaacgctaaaagttctagt 25237576  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||||  |||  || |||||||||||||||    
T  25237575 aatgactggacttactacaaagaaagttg 25237547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 178 - 342
Target Start/End: Original strand, 2017418 - 2017570
Alignment:
Q  178 ataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatcc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||   |||||||||||||||||||||          
T  2017418 ataaattcacatttcctacggatatatctttcctgcggaacctaaatacttggcaaaatctgcgggaaatacatttcctgcggaatttacacaa------ 2017511  T
Q  278 gcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
          |||||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||    
T  2017512 ------aaatccgcaggaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttg 2017570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 178 - 345
Target Start/End: Complemental strand, 40969359 - 40969204
Alignment:
Q  178 ataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatcc 277  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||          
T  40969359 ataatttcacatttcctacggatatatctttcctgcggaacctaaatcattgacaaaatctgcagaaaatgtgtttcctgcagaatttacacaa------ 40969266  T
Q  278 gcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaag 345  Q
          |||||||||||||||||||||| ||||  ||||||||||  |||||||||||||||||||||    
T  40969265 ------aaatccgcaggaaaagctaaaaattctcataatggttggacttgctacaaagaaagttgaag 40969204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 111 - 342
Target Start/End: Original strand, 41972335 - 41972570
Alignment:
Q  111 gcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggat---------- 200  Q
    |||||||||| ||||||||| | ||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||| || |||||              
T  41972335 gcggagccaggaattttataaaatctggtcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacattttctgcggatcctaaaatct 41972434  T
Q  201 ----atat---ctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcag 293  Q
        ||||   ||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||    
T  41972435 taagatattacctcacctg-ggaaccttaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcag 41972521  T
Q  294 gaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||||    
T  41972522 gaaaagctaaaagttctagtaatggttcggcttgctacaaagaaagttg 41972570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 342
Target Start/End: Complemental strand, 50384097 - 50383871
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggat-atatc--- 205  Q
    ||||||||||  |||||||||||| ||||||||||||   |||||||||||||||||| ||||||||||||| || | | ||||| ||||| || ||       
T  50384097 ggcggagccaagaattttatagagcctgggcaaaaaaaa-attgcaaaacgttacttccttcctgcgaataattttataattcctgcggattatttcaca 50383999  T
Q  206 tttcctgcggaacctaaa---tccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagcta 302  Q
    |||||| |||| ||||||   |||||||||||||||||||||||||||||||||||  ||||||| ||||||||||            ||||||||||||    
T  50383998 tttcctacggatcctaaaatatccttggcaaaatctgcaggaaatgtgtttcctgcaaaatttacgcaaacatccg------------caggaaaagcta 50383911  T
Q  303 aaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||| |||||||||||| |||| ||||||||||||||||||    
T  50383910 aaagttctagtaatggctgggcttgctacaaagaaagttg 50383871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 43003076 - 43003160
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  43003076 ggcggagccagaaattttatagagtctggacaaaaaatttattgcagaacgttacttctttcctgcgaataatttcacatttcct 43003160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 323
Target Start/End: Original strand, 2521948 - 2522056
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| ||| |||    
T  2521948 ggaacctaaatccttgataaaatctacaggaaatgtgtttcctgcggactttacacaaaaatccgcaggtaaatcc-caggaaaagctaaaagttcaagt 2522046  T
Q  314 aatggttggg 323  Q
    ||||| ||||    
T  2522047 aatggctggg 2522056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 104 - 338
Target Start/End: Original strand, 11826934 - 11827155
Alignment:
Q  104 aacaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatata 203  Q
    ||||| |||| ||||||||||||||||||| || ||||||||| |||| | |||| |||||||| ||||||||||||| |||||||||||||||||   |    
T  11826934 aacagtggcgaagccagaaattttatagagcctaggcaaaaaaattatcgtaaaatgttacttccttcctgcgaataatttcacatttcctacgga---a 11827030  T
Q  204 tctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaa 303  Q
    |||     || | |    |||||| |||||||||| |||||||||| |||| |||| |||||||| ||| ||| ||| |||||||||||| |||||||||    
T  11827031 tct-----gcagga----aatcctaggcaaaatctacaggaaatgtatttc-tgcgaaatttacataaaaatctgcaagtaaatccgcagaaaaagctaa 11827120  T
Q  304 aatttctagtaatggttgggtttgctacaaagaaa 338  Q
    || |||||||||||| | |  || |||||||||||    
T  11827121 aagttctagtaatggctagacttactacaaagaaa 11827155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 52373978 - 52373887
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| ||||||    
T  52373978 ggcggagccaggaattttatagagtctgtgcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggata 52373887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 340
Target Start/End: Original strand, 31929048 - 31929174
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||  || |||||||  |||||||||||||||||| |    |||||||    
T  31929048 ggaacctaaatccttggcaaaatttgcaggaaatgtgtttcttgcagaatttacaataaaatccgcaaataaatccgcaggaaaagcgagggattctagt 31929147  T
Q  314 aatggttgggtttgctacaaagaaagt 340  Q
    |||| ||||| ||||||||||||||||    
T  31929148 aatgattgggcttgctacaaagaaagt 31929174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 110 - 338
Target Start/End: Complemental strand, 9694288 - 9694074
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    |||||||||||||||||| ||||| |||||||||||| |||| |||||| |||| ||| ||| ||||||||| || ||||||||| |||| ||           
T  9694288 ggcggagccagaaatttt-tagagcctgggcaaaaaa-ttatcgcaaaatgttatttccttcttgcgaataatttgacatttcctgcgga-at------- 9694199  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
    |||| |     ||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||||  ||||||||||| ||||| ||||| |||    
T  9694198 ctgcag----gaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaattccgcaaataaatccgcagaaaaagttaaaagttc 9694103  T
Q  310 tagtaatggttgggtttgctacaaagaaa 338  Q
    ||||||||| || | || |||||||||||    
T  9694102 tagtaatggctgagcttactacaaagaaa 9694074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 32006113 - 32006023
Alignment:
Q  104 aacaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||| ||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||    
T  32006113 aacagtggcggagtcatgaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcct 32006023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 2521792 - 2521881
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||||| |||||||||||   |||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||| ||||||    
T  2521792 cggagccaggaattttatagaacatgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataatttcacatttcctgcggata 2521881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 36947617 - 36947532
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaag 299  Q
    ||||||||||| |||||||||||| ||||||||| |||||||||| ||||||| ||||| ||||||||||||||| |||| |||||    
T  36947617 ggaacctaaattcttggcaaaatccgcaggaaatatgtttcctgcagaatttatacaaaaatccgcaggtaaatcagcagaaaaag 36947532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 45887025 - 45887113
Alignment:
Q  16 atggtatgtagaccgaagagatcaaaacctaa-taaaaaat-ctaccgtaaaaattacagaccgaaacaatcataaactgccctctcgt 102  Q
    ||||||||||||| |||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||| |||| |||||||||||    
T  45887025 atggtatgtagacggaagagatcaaaacctaaataaaaaatactaccttaaaaaatacagaccgaaacaatcctaaaatgccctctcgt 45887113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 8901897 - 8901834
Alignment:
Q  219 ctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  8901897 ctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggagtttacacaaaaatctgcagg 8901834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 49745138 - 49745080
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa 272  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  49745138 ggaacctaaatccttggcaaaatctgcagaaaatgtgtttcctacggaatttacacaaa 49745080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 25237812 - 25237699
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    |||||||| || |||| |||||||  ||||||||   |||||  |||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||    
T  25237812 ggcggagctaggaattatatagagcatgggcaaattttttatcacaaaacgttacttccttcctgcgaataatttcacatttcctgcggatacatctttc 25237713  T
Q  210 ctgcggaacctaaa 223  Q
    ||||| | ||||||    
T  25237712 ctgcgaatcctaaa 25237699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 4728787 - 4728717
Alignment:
Q  105 acaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgc 175  Q
    |||| |||||||| || |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  4728787 acagtggcggagctaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgc 4728717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 32006028 - 32005978
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaac 218  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32006028 tttcctgcaaataaattcacatttcctacggatatatctttcctgcggaac 32005978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 1585750 - 1585689
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaag 345  Q
    ||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  1585750 aaatctgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgaag 1585689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 40969446 - 40969377
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataa 181  Q
    ||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||| || ||||||||||    
T  40969446 cggagccagcaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataa 40969377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 15034545 - 15034609
Alignment:
Q  281 ggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaag 345  Q
    |||||||| ||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||    
T  15034545 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcttgttacaaagaaagttgaag 15034609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 50100075 - 50100003
Alignment:
Q  129 tagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    |||||| |||| ||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||| ||||||    
T  50100075 tagagtttgggtaaaaaatttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcggata 50100003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 2017329 - 2017392
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcct 173  Q
    ||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||| |||||    
T  2017329 ggcggagccaggaattttataaagcctgggcaaaaaatttatcgcaaaacgttacttccttcct 2017392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 32005955 - 32005897
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||    
T  32005955 aaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttg 32005897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 32828367 - 32828278
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacgga 199  Q
    |||||||||||||||||||||| | |||||||||||| ||||  |||||  ||||||| ||||||| ||||| || ||||||||| ||||    
T  32828367 ggcggagccagaaattttatagggcctgggcaaaaaaattatcacaaaatattacttccttcctgcaaataattttacatttcctgcgga 32828278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 2576396 - 2576329
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcga 177  Q
    ||||||||||  ||||||||| ||||||||||||||| |||| ||||||||||||||| || ||||||    
T  2576396 ggcggagccaagaattttataaagtctgggcaaaaaaattatcgcaaaacgttacttcctttctgcga 2576329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 50099939 - 50099872
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcag 281  Q
    ||||||||||||||| ||||||| ||||| |||||  |||||| ||||||||||||||| ||||||||    
T  50099939 ggaacctaaatccttagcaaaatttgcagaaaatgaatttcctacggaatttacacaaaaatccgcag 50099872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 340
Target Start/End: Complemental strand, 41955324 - 41955199
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||||| ||||| | ||||||  |||||||||| |||||||||| || || |  || ||||||||||  |||||| |||| ||||| |    
T  41955324 ggaacctaaatccttggcgaaatccgtaggaaacatgtttcctgctgaatttacaccaaaattctgagataaatccgcaaaaaaagcaaaaagttctaat 41955225  T
Q  314 aatggttgggtttgctacaaagaaagt 340  Q
     |||  |||| ||||||||||||||||    
T  41955224 -atgactgggcttgctacaaagaaagt 41955199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 10715880 - 10715823
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    |||||||||||  ||||||||||| ||||||||||||||||| ||||||| |||||||    
T  10715880 ggcggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttc 10715823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 10929650 - 10929593
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    |||||||||||  ||||||||||| ||||||||||||||||| ||||||| |||||||    
T  10929650 ggcggagccaggtattttatagagcctgggcaaaaaatttatcgcaaaacattacttc 10929593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 32828250 - 32828202
Alignment:
Q  290 gcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    |||||||||||||||| ||||||||||||||||| || |||||||||||    
T  32828250 gcaggaaaagctaaaagttctagtaatggttgggattactacaaagaaa 32828202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 52373837 - 52373770
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcag 281  Q
    ||||||||||||| || ||||||||||| |||||  |||| |||||||||||||||||| ||| ||||    
T  52373837 ggaacctaaatccctgacaaaatctgcaagaaatacgttttctgcggaatttacacaaaaatctgcag 52373770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 42739869 - 42739951
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaa 296  Q
    ||||||||||||||||||| ||||||||||||| |   || ||||||||||  ||| || |||||||||||| ||| ||||||    
T  42739869 ggaacctaaatccttggcataatctgcaggaaacggactttctgcggaattatcaccaaaatccgcaggtaattccccaggaa 42739951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 356
Target Start/End: Complemental strand, 6017157 - 6017085
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    |||||||||| |||||| | || |||||||||| || ||| |||||||||||||||| ||||| ||| |||||    
T  6017157 aaatccgcagaaaaagcgacaagttctagtaatagtcgggcttgctacaaagaaagtagaagttgagcctggg 6017085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 49745263 - 49745199
Alignment:
Q  127 tatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacattt 191  Q
    ||||||||||||| ||||||||||| | |||| ||||| || ||||||||||||| || ||||||    
T  49745263 tatagagtctggggaaaaaatttatcgtaaaatgttacgtccttcctgcgaataattttacattt 49745199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 6017340 - 6017306
Alignment:
Q  111 gcggagccagaaattttatagagtctgggcaaaaa 145  Q
    ||||||||||||||||||||||| |||||||||||    
T  6017340 gcggagccagaaattttatagagcctgggcaaaaa 6017306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 50099881 - 50099823
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||| |||||||||||  ||||||||||||||   || |||||||||||||||    
T  50099881 aaatccgcagaaaaagctaaaagctctagtaatggttgaacttactacaaagaaagttg 50099823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 6255480 - 6255439
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttat 151  Q
    |||||||||||||||| |||||||| ||||| ||||||||||    
T  6255480 ggcggagccagaaattatatagagtttgggcgaaaaatttat 6255439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 37236116 - 37236168
Alignment:
Q  105 acaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaa 157  Q
    |||| ||||||||||||||||  |||||| |||||| |||||||||| |||||    
T  37236116 acagtggcggagccagaaattacatagagcctgggcgaaaaatttatcgcaaa 37236168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 114 - 342
Target Start/End: Original strand, 1780939 - 1781155
Alignment:
Q  114 gagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcctgc 213  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||  |||    
T  1780939 gagccaggaattttatagagtctgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctacggatatatcttttatgc 1781038  T
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||            |||||| |||||||||||||||||| ||||    
T  1781039 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgaggaatttacacaa------------aaatccacaggaaaagctaaaatttatagt 1781126  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||||||||||||||||||||||    
T  1781127 aatggttgggtttgctacaaagaaagttg 1781155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 113 - 356
Target Start/End: Complemental strand, 9696276 - 9696012
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct------------------ 194  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||                      
T  9696276 ggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttcacattt 9696177  T
Q  195 ---acggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgc 291  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||    
T  9696176 cctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatatgtttcctgcggaatttacacaaaaatctgcaggtaaatccgc 9696077  T
Q  292 aggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||||| |||||| ||||| ||||| ||||| |||||||||||||||||| || |||| |||||    
T  9696076 aggaaaatctaaaaattctaataatgattgggcttgctacaaagaaagttggagccgagcctggg 9696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 168 - 342
Target Start/End: Complemental strand, 15529091 - 15528917
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  15529091 tttcctgcagataaattcacatttcctacagatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatacatttcctgcggaatttac 15528992  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||    
T  15528991 acaaacatccgcaggtaaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttg 15528917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 110 - 342
Target Start/End: Original strand, 10397701 - 10397925
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggat-atatc--- 205  Q
    |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| || ||| || ||       
T  10397701 ggcggaaccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttccaacagataatttcaca 10397800  T
Q  206 tttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaa 305  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||             |||||||||||||||||||||    
T  10397801 tttcctacggaacctaaatccttggcaaaatatgcaggaaatgtgtttcctgcggaatttacacaa------------caatccgcaggaaaagctaaaa 10397888  T
Q  306 tttctagtaatggttgggtttgctacaaagaaagttg 342  Q
     |||| |||||||||||||||||||||||||||||||    
T  10397889 attctcgtaatggttgggtttgctacaaagaaagttg 10397925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 168 - 345
Target Start/End: Original strand, 9046886 - 9047063
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| |||||||||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  9046886 tttcctgcagataatttcacatttcctacagatatatatttcttgcggaacctaaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatctac 9046985  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaag 345  Q
    ||||| |||  ||||||||||||||||||||||||||| ||||||||||||||||  || ||||||||||||||||||    
T  9046986 acaaaaatctacaggtaaatccgcaggaaaagctaaaaattctagtaatggttggacttactacaaagaaagttgaag 9047063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 338
Target Start/End: Complemental strand, 15122170 - 15122018
Alignment:
Q  186 acatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaa 285  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||    
T  15122170 acatttcctacggatatatctttcctgcggaacgtaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttagacacaaatccgcaggtaa 15122071  T
Q  286 atccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    |||||||| ||||||||||| ||||| ||||| | |||||| |||||||||||    
T  15122070 atccgcagaaaaagctaaaaattctaataatgatagggttttctacaaagaaa 15122018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 168 - 305
Target Start/End: Complemental strand, 2941367 - 2941230
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2941367 tttcctgcagataatttcacatttcctacggatatatctttcatgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcgaaatttac 2941268  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaa 305  Q
    || || |||||||||||||||||||||||||| |||||    
T  2941267 actaaaatccgcaggtaaatccgcaggaaaagataaaa 2941230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 168 - 356
Target Start/End: Original strand, 34248984 - 34249160
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| |||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  34248984 tttcctgcagataatttcatattttctacggatatatctttcctgtggaacctaaacccttggcaaaatctgcaggaaatgtgtttcctgcagaatttac 34249083  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||            |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||| |||||    
T  34249084 acaa------------aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagttgagtctggg 34249160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 2836217 - 2836345
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |||||||| | ||||||||| ||||||||||| ||||||     
T  2836217 ggaacctaaatccttgacaaaatctgcaggaaatgtatttcctgcggaatttacacgaaaatccgcagatcaatccgcagaaaaagctaaaagttctagg 2836316  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||||||||||||||||||||||    
T  2836317 aatggttgggtttgctacaaagaaagttg 2836345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 356
Target Start/End: Original strand, 23663730 - 23663906
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| ||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23663730 tttcctgcagataatttcacattttctacggatatatctttcttacggaacataaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 23663829  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||            |||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||| || |||| |||||    
T  23663830 acaa------------aaatccgcaggaaaagctaaaaattatagcaatggttgggcttgctacaaagaaagttggagccgagcctggg 23663906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 2960896 - 2960805
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    |||||||||||||||||||||||| ||| || ||||| ||||||||||| |||||||| ||| ||||||||| |||||||||||| ||||||    
T  2960896 ggcggagccagaaattttatagagcctgagcgaaaaaattattgcaaaatgttacttccttcttgcgaataatttcacatttcctgcggata 2960805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 341
Target Start/End: Complemental strand, 339434 - 339319
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||            |||||| ||||||||||||||| || ||||    
T  339434 ggaacctaaatccttggtaaaatctgcaggaaatgtatttcctacggaatttacacaa------------aaatccacaggaaaagctaaaagttttagt 339347  T
Q  314 aatggttgggtttgctacaaagaaagtt 341  Q
    ||||| || |||||||||||||||||||    
T  339346 aatggctgagtttgctacaaagaaagtt 339319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 2836066 - 2836143
Alignment:
Q  117 ccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||| |||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||    
T  2836066 ccaggaattttatagagtctgagcaaaaaatttattacaagacgttacttccttcctgcgaataatttcacatttcct 2836143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 31188206 - 31188295
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||||  |||||||||||| |||||||||||| |||| ||||||||||||||| |||||| |||||| ||||||||| |||||||||    
T  31188206 cggagccatgaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgtgaataatttcacattttctacggata 31188295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 23663651 - 23663735
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||| |||||| |||||||||||| ||||  ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  23663651 ggcgcagccaggaattttatagagcctggataaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacatttcct 23663735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 34248917 - 34248989
Alignment:
Q  122 aattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||| ||||||||||||    
T  34248917 aattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcggataatttcacatttcct 34248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 14938816 - 14938981
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggat-atatc---tt 207  Q
    ||||| ||||||||||||||||  ||||||||||| |||| |||||| |||||||  |||||| |||||| |||||||||||| | ||| || ||   ||    
T  14938816 cggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttactttcttcctgggaataatttcacatttcctgcagataatttcacatt 14938915  T
Q  208 tcctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttaca 268  Q
    |||| | ||| ||     |||||||  |||||||||||||||||||||||||||||||||||||||    
T  14938916 tcctacagaatctgcaggaaatcctaagcaaaatctgcaggaaatgtgtttcctgcggaatttaca 14938981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 34188856 - 34188773
Alignment:
Q  259 ggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||| |||||||| || |||||||||||||||||||| | ||| |||||||||||| |||| ||||||||||||||||||    
T  34188856 ggaatttatacaaacattcgtaggtaaatccgcaggaaaagttgaaagttctagtaatggctgggcttgctacaaagaaagttg 34188773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 339562 - 339472
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggat 200  Q
    |||||||| |||||||||||||||  |||||||||||||||| |||||| |||||||| ||||||| | ||| |||||||||||| |||||    
T  339562 ggcggagctagaaattttatagagcttgggcaaaaaatttatcgcaaaatgttacttccttcctgcaattaatttcacatttcctgcggat 339472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 15122272 - 15122186
Alignment:
Q  105 acaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacattt 191  Q
    |||| ||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||  || |||||||||| |||||||||    
T  15122272 acagtggcggagtcaggaattttatagagtttgggcaaaaaatttatcgcaaaacgttactttctttctgcgaataatttcacattt 15122186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 34189022 - 34188931
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||||||| |||||| ||||| ||| ||||||||||| | |||||||||||| ||| || ||||||||| |||||||||||| ||||||    
T  34189022 ggcggagccaggaattttctagagcctgagcaaaaaatttgtcgcaaaacgttacctctctcttgcgaataatttcacatttcctgcggata 34188931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 28614299 - 28614377
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacattt 191  Q
    |||| |||||||||||||||| ||| |||||||| |||| |||||| |||||||| ||||||||||||| |||||||||    
T  28614299 ggaggcagaaattttatagagcctgtgcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattt 28614377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 28614434 - 28614510
Alignment:
Q  260 gaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaaga 336  Q
    ||||||||| ||| ||||||||||||||||| |||||||| ||||| |||||||||||| | || ||||||||||||    
T  28614434 gaatttacataaaaatccgcaggtaaatccgtaggaaaagttaaaagttctagtaatggctaggcttgctacaaaga 28614510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 2941443 - 2941389
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||    
T  2941443 ggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttc 2941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 9046806 - 9046860
Alignment:
Q  109 gggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgtta 163  Q
    |||||||||||||||||||||||||| |||||||||||||||| | |||||||||    
T  9046806 gggcggagccagaaattttatagagtttgggcaaaaaatttatcggaaaacgtta 9046860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 31200050 - 31200140
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgc-aaaacgttacttctttcctgcgaataaattcacatttcctacggata 201  Q
    ||||||||  ||||||||||||  ||||||||||| |||| || ||||||||||||| ||||||||||||| ||||||||| | |||||||    
T  31200050 cggagccatgaattttatagagcatgggcaaaaaaattatcgctaaaacgttacttccttcctgcgaataatttcacattttccacggata 31200140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 15529170 - 15529107
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcct 173  Q
    ||||||| ||| |||||||||||| || |||||||||||||| ||||||| |||||||||||||    
T  15529170 ggcggagtcaggaattttatagagcctaggcaaaaaatttatcgcaaaacattacttctttcct 15529107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 2960724 - 2960671
Alignment:
Q  285 aatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||||||||||||||||||| |||||||| ||| |||  ||||||||||||||    
T  2960724 aatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaa 2960671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 26218301 - 26218348
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaa 157  Q
    |||||||||||||||| ||||||| ||| || ||||||||||||||||    
T  26218301 ggcggagccagaaattatatagagcctgagcgaaaaatttattgcaaa 26218348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 2960776 - 2960715
Alignment:
Q  221 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    ||||||| ||||||||  ||||||||||||||| ||||| |||||||| ||  |||||||||    
T  2960776 aaatcctgggcaaaattagcaggaaatgtgttttctgcgaaatttacataataatccgcagg 2960715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 356
Target Start/End: Complemental strand, 5582516 - 5582444
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||||||||||||||| | |  |||||||||| | || | |||||||||||||||| ||||| ||| |||||    
T  5582516 aaatccgcaggaaaagcgagaggttctagtaatagctgtgcttgctacaaagaaagtagaagttgagcctggg 5582444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 8e-71; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 110 - 356
Target Start/End: Original strand, 36406381 - 36406648
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattca---------------------ca 188  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||                     ||    
T  36406381 ggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttgcagataatttcaca 36406480  T
Q  189 tttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatc 288  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  36406481 tttcctacggatatatctttcctgcggaacctcaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaatatccgcaggtaaatc 36406580  T
Q  289 cgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    | ||||||||||||||| || |||||||| ||||| |||||||||||||||||| || |||| |||||    
T  36406581 cacaggaaaagctaaaaattatagtaatgtttgggcttgctacaaagaaagttggagccgagcctggg 36406648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 114 - 356
Target Start/End: Complemental strand, 24965231 - 24965001
Alignment:
Q  114 gagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcctgc 213  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||  || |||||||||| |||||||||||| |  |||||||||||||||    
T  24965231 gagccaggaattttatagagcctgggcaaaaaatttatcgcaaaaccttactttctttctgcgaataatttcacatttcctgcaaatatatctttcctgc 24965132  T
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||    
T  24965131 ggaacctaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaa------------aaatccgcaggaaaagctaaaaattctagt 24965044  T
Q  314 aatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    |||||||||| |||||||||||||||||| || |||| |||||    
T  24965043 aatggttgggcttgctacaaagaaagttggagccgagcctggg 24965001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 168 - 342
Target Start/End: Original strand, 3383990 - 3384164
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||   |||  ||| ||||||||    
T  3383990 tttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctacatgaaatacattttttgcagaatttac 3384089  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| ||  ||||||||||||||||||    
T  3384090 acaaaaatccgcaggtaaatccgcagaaaaagctaaaaattctaataatggtaggacttgctacaaagaaagttg 3384164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 178 - 356
Target Start/End: Complemental strand, 28928194 - 28928027
Alignment:
Q  178 ataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgca-ggaaatgtgtttcctgcggaatttacacaaacatc 276  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         
T  28928194 ataatttcacatttcctacagatatatctttcctgcggaacctaaatccttggcaaaatctgcagggaaatgtgtttcctgcggaatttacacaa----- 28928100  T
Q  277 cgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
           || ||||||||||||||||||| |||||||||||||| || |||||||||||||||||| || |||| |||||    
T  28928099 -------aactccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaagttggagccgagcctggg 28928027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 13243192 - 13243064
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||| |||||| |||||||||||||||| ||||| |    
T  13243192 ggaacctaaatccttggcaaaatctacaggaaatgtgtttcctgcggaatttacacaaaactccgcagataaatctgcaggaaaagctaaaagttctaat 13243093  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||||| |||| |||||||||| |||||||    
T  13243092 aatggctgggcttgctacaaaaaaagttg 13243064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 39431679 - 39431807
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||||||| |||||||||||| ||| |||    
T  39431679 ggaacctaaatctttggcaaaatctgcacgaaatgtgtttcctacggaatttacacaaaactccgcaggtaaatccgcaagaaaagctaaaagttcaagt 39431778  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||| |  ||||||||||||||||||||||    
T  39431779 aattgaagggtttgctacaaagaaagttg 39431807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 114 - 282
Target Start/End: Original strand, 27321758 - 27321935
Alignment:
Q  114 gagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggat-atatc---tttc 209  Q
    |||||||||||||||||||| |||||||||||| |||| |||||| |||||||| ||||||||||||| ||||||||| || | ||| || ||   | ||    
T  27321758 gagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataatttcacatatc 27321857  T
Q  210 ctgcggaacct-----aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    |||| ||| ||     |||| || |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||    
T  27321858 ctgcagaatctgcaggaaattctaggcaaaatttgcaggaaatgtgtttcctgcggaatttacataaaaatccgcagg 27321935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 38214949 - 38214860
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacgga 199  Q
    ||||||||||||||||||||||||  ||||||||||| |||| |||||| |||||||| ||||||||||||| |||||||||||| ||||    
T  38214949 ggcggagccagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttcattcctgcgaataatttcacatttcctgcgga 38214860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 34282759 - 34282836
Alignment:
Q  117 ccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||||||||||||||| |||| |||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||    
T  34282759 ccagaaattttatagagcctggacaaaaaatttatcgcacaacgttacttccttcctgcgaataatttcacatttcct 34282836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 342
Target Start/End: Original strand, 34282913 - 34283030
Alignment:
Q  213 cggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctag 312  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |            ||||||||| |||||||||||| ||||||    
T  34282913 cggaacttaaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacta------------aaatccgcaagaaaagctaaaagttctag 34283000  T
Q  313 taatggttgggtttgctacaaagaaagttg 342  Q
    |||||  |||  ||||||||||||||||||    
T  34283001 taatgactggacttgctacaaagaaagttg 34283030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 35384257 - 35384341
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||||||||| ||||||||||||  |||||||||||||||| |||||||| |||||| ||||| ||||||| ||||||||||||    
T  35384257 ggcggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacggtacttccttcctacgaataatttcacatttcct 35384341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 345
Target Start/End: Complemental strand, 8968435 - 8968309
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||||||||||| |||||      |||||||||||||||||||| || |||||||||||||||||||| |||||  | |  |||||||    
T  8968435 ggaacctaaatccttggcaaaatccgcaggc-----gtttcctgcggaatttacaccaatatccgcaggtaaatccgcagaaaaagtgataggttctagt 8968341  T
Q  314 aatggttgggtttgctacaaagaaagttgaag 345  Q
    ||||| |||  ||||||||||| |||| ||||    
T  8968340 aatggctggacttgctacaaaggaagtagaag 8968309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 31500854 - 31500950
Alignment:
Q  220 taaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatgg 318  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||| ||  ||||||| |||||||| ||| ||||||||||| || |||||||||    
T  31500854 taaatccttggcaaaatccgtaggaaatgtgtttcctgcagaatttacataa--atccgcaagtaaatcctcagaaaaagctaaaaattttagtaatgg 31500950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 31500707 - 31500818
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    |||||||||||||||||||  |||||||   ||||||||||||||||||  ||||||| ||| | ||||||| || |||||||||||| |||||||||||    
T  31500707 ggcggagccagaaatttta--gagtctgaataaaaaatttattgcaaaatattacttccttcatacgaataattttacatttcctacgtatatatctttc 31500804  T
Q  210 ctgcggaacctaaa 223  Q
    |  |||| ||||||    
T  31500805 caacggatcctaaa 31500818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 28928289 - 28928212
Alignment:
Q  104 aacaggggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataa 181  Q
    ||||| ||||||||||| ||||||| |||||||||| ||||||||||| | |||| |||||||| |||||||||||||    
T  28928289 aacagtggcggagccaggaattttaaagagtctgggtaaaaaatttatcgtaaaaagttacttccttcctgcgaataa 28928212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 13243342 - 13243273
Alignment:
Q  122 aattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacattt 191  Q
    |||||||||||| ||| ||||||||||||| | |||||||||||| |||| ||| ||||| |||||||||    
T  13243342 aattttatagagcctgagcaaaaaatttatcgtaaaacgttacttttttcttgccaataatttcacattt 13243273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 345
Target Start/End: Original strand, 21138075 - 21138194
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||||||||||  |||||||| ||||||| |||| |||||||||      ||      ||||||||||||||||| | |  |||||||    
T  21138075 ggaacctaaatccttggcaaaattcgcaggaaacgtgtttcatgcgaaatttacac------cc------aaatccgcaggaaaagcaagaggttctagt 21138162  T
Q  314 aatggttgggtttgctacaaagaaagttgaag 345  Q
    ||||||| || |||||||||||||||| ||||    
T  21138163 aatggttaggcttgctacaaagaaagtagaag 21138194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 27321925 - 27321979
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    ||||||||||||||| |||||| || ||||||||| |||| ||||||||||||||    
T  27321925 aaatccgcaggaaaaactaaaagttttagtaatggctgggcttgctacaaagaaa 27321979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 38214799 - 38214745
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaa 338  Q
    |||||||||||||||||||||| |||||||| ||| |||  ||||||||||||||    
T  38214799 aaatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaa 38214745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 3383911 - 3383968
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    |||||||||||||||||||||||   || ||||||| ||||| |||||||||||||||    
T  3383911 ggcggagccagaaattttatagaacatgagcaaaaattttatcgcaaaacgttacttc 3383968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 38214850 - 38214789
Alignment:
Q  221 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    ||||||| | |||||||||||||||||||||||  ||| ||||||||| ||| |||||||||    
T  38214850 aaatcctagacaaaatctgcaggaaatgtgttttatgcagaatttacataaaaatccgcagg 38214789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 26945771 - 26945689
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaa 296  Q
    ||||||||||||||||| ||| || | ||||||   |||||||| ||||||| ||| || |||||||| ||| ||||||||||    
T  26945771 ggaacctaaatccttggtaaattccgtaggaaacaggtttcctgtggaattttcaccaatatccgcagataattccgcaggaa 26945689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 24674618 - 24674667
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaat 263  Q
    ||||||| |||||||||||||||| |||||||||  |||||| |||||||    
T  24674618 ggaacctcaatccttggcaaaatccgcaggaaatcggtttccagcggaat 24674667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 42232104 - 42232063
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttat 151  Q
    |||||||||||| | ||||| |||||||||||||||||||||    
T  42232104 ggcggagccagataatttatggagtctgggcaaaaaatttat 42232063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 110 - 342
Target Start/End: Original strand, 22572613 - 22572833
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||||||| ||||||||| || |||| |||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||| | |||||||||||    
T  22572613 ggcggagccaggaattttataaagcctggacaaaaaatttatcgcaaaacgttactttcttcctgcgaataatttcacatttcctatgaatatatctttc 22572712  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||            |||| ||||||||||||||||  |||    
T  22572713 ttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctggggaatttacacaa------------aaattcgcaggaaaagctaaatattc 22572800  T
Q  310 tagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||||||||| || ||||||||||||||||||    
T  22572801 tagtaatggttaggcttgctacaaagaaagttg 22572833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 168 - 356
Target Start/End: Original strand, 6799856 - 6800032
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6799856 tttcctgcagataatttcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 6799955  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||||            |||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||| || |||| |||||    
T  6799956 acaa------------aaatccgcaggaaaagttaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctggg 6800032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 178 - 342
Target Start/End: Complemental strand, 13203902 - 13203750
Alignment:
Q  178 ataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatcc 277  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          
T  13203902 ataatttcacatttcctacggatatctctttcctgcggaacctaaatccttggcaaaatctgcaggaaacgtgtttcctgcggaatttacacaa------ 13203809  T
Q  278 gcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
          |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  13203808 ------aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttg 13203750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 214 - 374
Target Start/End: Complemental strand, 25563034 - 25562869
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||  |||||||| ||||||||||||||||||||||| |||||||    
T  25563034 ggaacctaaatccttggcaaaatctgcaggaaatgtatttcctgcggaatttacaaaacaatccgcagataaatccgcaggaaaagctaaaagttctagt 25562935  T
Q  314 aatggttgggtttgctacaaagaaagttgaagtcga-----ggctgggtggtggctccgcccctgc 374  Q
    |||||||||| |||||||||||||||||| ||  ||     ||||||| |||||||||||||||||    
T  25562934 aatggttgggcttgctacaaagaaagttggagctgagcctgggctggggggtggctccgcccctgc 25562869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 168 - 356
Target Start/End: Original strand, 41114840 - 41115016
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41114840 tttcctgcagataatttcacatttcctacggatatatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 41114939  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaagtcgaggctggg 356  Q
    ||            | ||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||||| || |||| |||||    
T  41114940 ac------------gaaaatccgcaggaaaaactaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctggg 41115016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 168 - 342
Target Start/End: Original strand, 18299113 - 18299275
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18299113 tttcctgcagataatttcacatttcctacagatatatctttcttgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 18299212  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||            ||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  18299213 acaa------------aaatccgcaagaaaagttaaaaattctagtaatggttgggcttgctacaaagaaagttg 18299275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 122 - 342
Target Start/End: Complemental strand, 2476018 - 2475805
Alignment:
Q  122 aattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcctgcggaaccta 221  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  2476018 aattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcgaatatatctttcctgcggaaccta 2475919  T
Q  222 aatccttggcaaaatctgcaggaaatgtgtttc-----ctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaat 316  Q
     ||| ||||||||||||||| |||||| |||||      ||||||||||||||||            ||||||||| || ||||||||| ||||||||||    
T  2475918 tatcattggcaaaatctgcaagaaatgagtttcatgttgtgcggaatttacacaa------------aaatccgcaagacaagctaaaagttctagtaat 2475831  T
Q  317 ggttgggtttgctacaaagaaagttg 342  Q
    || |||| || |||||||||||||||    
T  2475830 ggctgggcttcctacaaagaaagttg 2475805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 29257590 - 29257401
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct--------------- 194  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||||                   
T  29257590 ggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataagttcaca 29257491  T
Q  195 ------acggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccg 278  Q
          |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  29257490 tttcctacggatatatctttcctgcggaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccg 29257401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 17249554 - 17249441
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||| |||||||||||| |||||||||||||     
T  17249554 ggcggagtcaggaattttatagagtctgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttcctgcggatatatcttta 17249455  T
Q  210 ctgcggaacctaaa 223  Q
     |||||| ||||||    
T  17249454 atgcggatcctaaa 17249441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 303983 - 304067
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||  |||||||||| ||||||||||||    
T  303983 ggcggagccagaaattttatagagtttgggcaaaaaaattatcgcaaaacgttacttcttatctgcgaataatttcacatttcct 304067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 17148879 - 17148808
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaa 286  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17148879 ggaacctaaatccttg-caaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaa 17148808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 342
Target Start/End: Complemental strand, 12000619 - 12000505
Alignment:
Q  217 acctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaat 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||           | |||||||||||||||||||| ||||| ||||    
T  12000619 acctatatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa-----------acatccgcaggaaaagctaaaacttctactaat 12000531  T
Q  317 ggttgggtttgctacaaagaaagttg 342  Q
    || |||  ||| ||||||||||||||    
T  12000530 ggctggacttgttacaaagaaagttg 12000505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 345
Target Start/End: Complemental strand, 34756790 - 34756659
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||||||||||||||||  ||||||| ||| ||||| |||||||||||| || ||| ||||||||||||||||||||||  | |  |||||||    
T  34756790 ggaacctaaatccttggcaaaatccacaggaaacgtgattcctacggaatttacaccaaaatctgcaggtaaatccgcaggaaaagtgagaggttctagt 34756691  T
Q  314 aatggttgggtttgctacaaagaaagttgaag 345  Q
    || ||  ||  |||||||||||||||| ||||    
T  34756690 aacggccggacttgctacaaagaaagtagaag 34756659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 45444339 - 45444458
Alignment:
Q  105 acaggggcggagccagaaattttatagagtctgggcaaaa-aatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatata 203  Q
    |||| ||| ||| ||||||||| ||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||   ||||||    
T  45444339 acagtggcagagtcagaaatttcatagagtctggacaaaaaaatttattgcaaaacattacttccttcctgcgaataatttcacatttcctgtagatata 45444438  T
Q  204 tctttcctgcggaacctaaa 223  Q
    |||||| ||| || ||||||    
T  45444439 tctttcttgcagatcctaaa 45444458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 41010734 - 41010652
Alignment:
Q  112 cggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||||| || ||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  41010734 cggagctaggaattttatagagtgtggacaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 41010652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 304141 - 304255
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||              || ||||||||||||||||||| |||||||    
T  304141 ggaacctaaatccttggcaaaatctgcaagaaatgtgtttcctgcgaaatttacac--------------aactccgcaggaaaagctaaaagttctagt 304226  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    ||||| || | ||||||||||||||||||    
T  304227 aatggctgagcttgctacaaagaaagttg 304255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 17149020 - 17148936
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||||||| ||||||||||| |||  ||||||||||||||||  |||||||||||||| ||||||||||||| ||||||||||||    
T  17149020 ggcggagctagaaattttattgagcttgggcaaaaaatttatctcaaaacgttacttccttcctgcgaataatttcacatttcct 17148936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 16220920 - 16221033
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||| || ||||  |||| | ||||||| ||  ||||||| |||||    
T  16220920 ggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaacgttatttcctttctgcatataattgcacattttctgtggatatacctttc 16221019  T
Q  210 ctgcggaacctaaa 223  Q
    |||| || ||||||    
T  16221020 ctgcagatcctaaa 16221033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 15651303 - 15651248
Alignment:
Q  217 acctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa 272  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  15651303 acctaaatccttggcaaaatacgcaggaaatgtgtttcctgcggaatttacacaaa 15651248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 17249416 - 17249349
Alignment:
Q  215 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    |||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||| ||||    
T  17249416 gaacctaaatccttggcaaaatctacaagaaatgtgtttcctgtggaatttacacaaaaatccacagg 17249349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 41010574 - 41010507
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcag 281  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  41010574 ggaacctaaatccttagtaaaatctgcaggaaatgtgtttcctgcagaatttatacaaaaatccgcag 41010507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 33909246 - 33909322
Alignment:
Q  118 cagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    |||||||||||||||||||||||||||| ||||| |||||| ||||| || ||| ||| ||||| ||||||||||||    
T  33909246 cagaaattttatagagtctgggcaaaaactttatcgcaaaatgttacatccttcatgcaaataatttcacatttcct 33909322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 13203991 - 13203920
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataa 181  Q
    ||||||||||| ||||||||||||  || ||||||||||||| |||||| |||||||| |||| ||||||||    
T  13203991 ggcggagccaggaattttatagagcatgagcaaaaaatttatcgcaaaatgttacttccttccagcgaataa 13203920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 41114764 - 41114818
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    |||||||| ||||||||||||  |||||||||||||||| |||||||||||||||    
T  41114764 ggagccaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttc 41114818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 12000781 - 12000700
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacattt 191  Q
    ||||||||||| |||| ||||||| || ||||||||| |||| |||||| ||||| || ||||||||||||| || ||||||    
T  12000781 ggcggagccaggaattatatagagcctaggcaaaaaaattatcgcaaaatgttacgtccttcctgcgaataattttacattt 12000700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 18299049 - 18299105
Alignment:
Q  125 tttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataa 181  Q
    |||||| ||| |||||||||||||||| | ||||||||||||| |||||||||||||    
T  18299049 tttataaagtttgggcaaaaaatttatcgtaaaacgttacttccttcctgcgaataa 18299105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 304062 - 304117
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaa 223  Q
    ||||||||  |||| |||||||||||| ||||||||||||||||||||| ||||||    
T  304062 tttcctgcagataatttcacatttcctgcggatatatctttcctgcggatcctaaa 304117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 12000701 - 12000646
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaa 223  Q
    ||||| ||| |||| |||||||||||| ||||||||||||||||||||| ||||||    
T  12000701 tttccggcggataatttcacatttcctgcggatatatctttcctgcggatcctaaa 12000646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 15429276 - 15429213
Alignment:
Q  215 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccg 278  Q
    ||||||||||||||| |||||||  |||||||  ||||||||||||||||||||| || |||||    
T  15429276 gaacctaaatccttgacaaaatccacaggaaacatgtttcctgcggaatttacaccaaaatccg 15429213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 33909359 - 33909426
Alignment:
Q  215 gaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcagg 282  Q
    ||||||||||| |||| |||||||||||||||||| | |||||| |||||| |||||| || ||||||    
T  33909359 gaacctaaatctttggaaaaatctgcaggaaatgtttctcctgcagaattttcacaaaaattcgcagg 33909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 4570554 - 4570615
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaag 345  Q
    ||||||||||| ||||| ||| ||||||||||||| |||| || ||||||||||||| ||||    
T  4570554 aaatccgcaggtaaagcgaaagtttctagtaatggctgggcttactacaaagaaagtagaag 4570615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 19881534 - 19881599
Alignment:
Q  232 aaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaa 297  Q
    ||||||||||||||| ||||||| |||||||||| |||  | |  |||||||||||||||||||||    
T  19881534 aaaatctgcaggaaacgtgtttcatgcggaattttcacctaaaatcgcaggtaaatccgcaggaaa 19881599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 26655690 - 26655731
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttat 151  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  26655690 ggcggagccaaaaattttatagagcctgggcaaaaaatttat 26655731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 13654790 - 13654874
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaa 298  Q
    |||||||||||||||||||||||| |||||||||   ||||||| || ||||  ||  | | ||| |||||||||||||||||||    
T  13654790 ggaacctaaatccttggcaaaatccgcaggaaatcgttttcctgtggtattttaacttaaacccgtaggtaaatccgcaggaaaa 13654874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 1955143 - 1955096
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaa 157  Q
    |||||||||||||||||| |||||| ||| |||||||||||| |||||    
T  1955143 ggcggagccagaaattttttagagtatggacaaaaaatttatcgcaaa 1955096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 34756897 - 34756834
Alignment:
Q  160 gttacttctttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaa 223  Q
    |||||||| |||||||| |||| |  ||||||||| |||||||| |||||||||||| ||||||    
T  34756897 gttacttccttcctgcggataattgtacatttcctgcggatatacctttcctgcggatcctaaa 34756834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 35649538 - 35649573
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaa 145  Q
    ||||||||||||||||||||||||| ||||||||||    
T  35649538 ggcggagccagaaattttatagagtttgggcaaaaa 35649573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 42477652 - 42477605
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaa 157  Q
    ||||||||||| ||||||||||||| ||| ||||||| ||||||||||    
T  42477652 ggcggagccaggaattttatagagtttggacaaaaaaattattgcaaa 42477605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 33909421 - 33909474
Alignment:
Q  289 cgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||| |||||| |||||||||||  || | ||||||||||||||||||    
T  33909421 cgcaggaaaaactaaaaattctagtaatgactgagcttgctacaaagaaagttg 33909474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 42152602 - 42152663
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttgaag 345  Q
    ||||||||||||||||| | |  ||||| |||||| ||| ||||||||||||||||| ||||    
T  42152602 aaatccgcaggaaaagcgagaggttctaataatggctggatttgctacaaagaaagtagaag 42152663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 9011436 - 9011468
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaa 246  Q
    |||||||||| ||||||||||||||||||||||    
T  9011436 ggaacctaaagccttggcaaaatctgcaggaaa 9011468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 16221076 - 16221132
Alignment:
Q  284 aaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagt 340  Q
    ||||||||||||||||| | || ||||||||||||||| | ||| |||| |||||||    
T  16221076 aaatccgcaggaaaagcaagaagttctagtaatggttgtgcttgttacacagaaagt 16221132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 25563196 - 25563112
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||||||||| ||||||||||||  |||| ||    ||||| ||||||||||||||| || |||| ||||| |||| |||||||    
T  25563196 ggcggagccaggaattttatagagcttgggaaatttttttatcgcaaaacgttacttcctttctgcaaataatttcatatttcct 25563112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 29759855 - 29759895
Alignment:
Q  221 aaatccttggcaaaatctgcaggaaatgtgtttcctgcgga 261  Q
    ||||||||||||||||| ||||||||  |||||||||||||    
T  29759855 aaatccttggcaaaatcggcaggaaacctgtttcctgcgga 29759895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 338
Target Start/End: Complemental strand, 4301 - 4085
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttc 209  Q
    |||||||||| ||||||||||||| |||||||||||| |||| |||||| |||||||| ||||||||||||| |||||||||||||||||   ||||       
T  4301 ggcggagccataaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacatttcctacgga---atct--- 4208  T
Q  210 ctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttc 309  Q
      || | |    |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| |||    
T  4207 --gcagga----aatcctgggcaaaatctgcaggaaatgtgtttcctacggaatttacataaacatccgcaggtaaattcgcaggaaaagctaaaagttc 4114  T
Q  310 tagtaatggttgggtttgctacaaagaaa 338  Q
    ||||||||| |||| ||||||||||||||    
T  4113 tagtaatggctgggcttgctacaaagaaa 4085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 94; Significance: 9e-46; HSPs: 5)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 168 - 342
Target Start/End: Complemental strand, 7055 - 6893
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||    
T  7055 tttcctgctgataaattcacatttcctacggatatatccttcctgcggaacctaaatccttggcaaaatctgcaggaaatgcatttccttcggaatttac 6956  T
Q  268 acaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    ||||             ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  6955 acaa------------taatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 168 - 282
Target Start/End: Complemental strand, 11668 - 11554
Alignment:
Q  168 tttcctgcgaataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttac 267  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  11668 tttcctgcagataaattcacatttcctacggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgcattttctgcggaatttac 11569  T
Q  268 acaaacatccgcagg 282  Q
    ||||  |||||||||    
T  11568 acaataatccgcagg 11554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 11747 - 11690
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||    
T  11747 ggcggagccaggaattttatagaacctgggcaaaaaatttatcgcaaaacgttacttc 11690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 11563 - 11507
Alignment:
Q  285 aatccgcaggaaaagctaaaatttctagtaatggttgggtttgctacaaagaaagttg 342  Q
    |||||||||||||||  |||||| ||||||||||| ||| ||||||||||||||||||    
T  11563 aatccgcaggaaaagaaaaaatt-ctagtaatggtagggcttgctacaaagaaagttg 11507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 7132 - 7077
Alignment:
Q  111 gcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttc 167  Q
    ||||||| || |||||||||||  ||||||||||||||||| || ||||||||||||    
T  7132 gcggagctaggaattttatagaacctgggcaaaaaatttatcgc-aaacgttacttc 7077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 1919 - 1730
Alignment:
Q  110 ggcggagccagaaattttatagagtctgggcaaaaaatttattgcaaaacgttacttctttcctgcgaataaattcacatttcct--------------- 194  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||||                   
T  1919 ggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataagttcaca 1820  T
Q  195 ------acggatatatctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccg 278  Q
          |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  1819 tttcctacggatatatctttcctgcggaacgtaaattcttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatccg 1730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 109316 - 109444
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||| ||| ||||||||||||| | |||||||| |||||||||||||||||| || ||||||||||||| ||||||||| ||||| |||||||    
T  109316 ggaacctaaattcttagcaaaatctgcagaacatgtgttttctgcggaatttacacaaaaattcgcaggtaaatccacaggaaaagttaaaagttctagt 109415  T
Q  314 aatggttgggtttgctacaaagaaagttg 342  Q
    |||   |||| ||||||||||||||||||    
T  109416 aataactggggttgctacaaagaaagttg 109444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 112099 - 112210
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaa-atttattgcaaaacgttacttctttcctgcgaataaattcacatttcctacggatatatctttcct 211  Q
    |||| ||||||||| || ||| ||||||||||| |||||||||||||| ||||||| ||||||| ||||| ||||| |||| |  |||||||||||||||    
T  112099 ggagtcagaaatttcattgagcctgggcaaaaatatttattgcaaaacattacttccttcctgcaaataatttcacgtttcatgtggatatatctttcct 112198  T
Q  212 gcggaacctaaa 223  Q
    ||||| ||||||    
T  112199 gcggatcctaaa 112210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 112234 - 112333
Alignment:
Q  214 ggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaatttctagt 313  Q
    ||||||||||| ||| ||| ||||||||| ||||||||   ||| |||||||||||||| || |||||||||||||| |||||||| ||||| |||||||    
T  112234 ggaacctaaattcttagcagaatctgcagaaaatgtgt---ctgtggaatttacacaaaaattcgcaggtaaatccgtaggaaaagttaaaagttctagt 112330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 109198 - 109280
Alignment:
Q  113 ggagccagaaattttatagagtctgggcaaaaa-atttattgcaaaacgttacttctttcctgcgaataaattcacatttcct 194  Q
    ||||| |||||||| |||||| |||| |||||| |||||||||||||| ||||||| ||||||||||||| ||||| ||||||    
T  109198 ggagctagaaatttcatagagcctggacaaaaatatttattgcaaaacattacttccttcctgcgaataatttcacgtttcct 109280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University