View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_18 (Length: 410)
Name: NF1074_low_18
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Complemental strand, 27313699 - 27313301
Alignment:
| Q |
11 |
acaatatacagccaacaaacaggnnnnnnnnntatggacaaattcttcttggtttctttactcggtttgcttatagtggcgaatggagtttcaggaagca |
110 |
Q |
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| T |
27313699 |
acaatatacagccaacaaacaggaaaaaaaaatatggacaaattcttcttggtttctttactcggtttgcttatagtggcgaatggagtttcaggaagca |
27313600 |
T |
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| Q |
111 |
tgatgtgcgacaacaactttggcatgctagaagaactcaacaacctcgacacagaggaagattatgaggtagaagaactttctgacataccttcatggac |
210 |
Q |
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| T |
27313599 |
tgatgtgcgacaacaactttggcatgctagaagaactcaacaacctcgacacagaggaagattatgaggtagaagaactttctgacataccttcatggac |
27313500 |
T |
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| Q |
211 |
aagtgaacgcggcggaaaagttcttgtgaatattgatagctttggtgctgcaggaaatggagaaactgatgatactgaggtaaagttcgttcattatttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27313499 |
aagtgaacgcggcggaaaagttcttgtgaatattgatagctttggtgctgcaggaaatggagaaactgatgatactgaggtaaagttctttcattatttg |
27313400 |
T |
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| Q |
311 |
caaattagacctatttttctatgttcaacatgcactttacacattcgaggttgttgaacatatgaaactgatgatactgatcaattctttatttataggc |
410 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27313399 |
caaattagtcctatttttctatgttcaacatgcactttacacattcgaggttgttgaacatatgaaactgatgatactgatcaattc-ttatttataggc |
27313301 |
T |
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