View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1074_low_19 (Length: 404)

Name: NF1074_low_19
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1074_low_19
NF1074_low_19
[»] chr6 (1 HSPs)
chr6 (115-379)||(5636841-5637105)
[»] chr4 (3 HSPs)
chr4 (10-107)||(41943011-41943108)
chr4 (10-107)||(10336077-10336174)
chr4 (61-107)||(3295359-3295405)
[»] chr1 (4 HSPs)
chr1 (10-107)||(31654568-31654665)
chr1 (10-107)||(51443519-51443616)
chr1 (10-92)||(13380215-13380297)
chr1 (10-77)||(8311180-8311247)
[»] chr8 (4 HSPs)
chr8 (10-107)||(9818171-9818268)
chr8 (10-105)||(42077465-42077560)
chr8 (10-107)||(21231842-21231939)
chr8 (44-107)||(9881152-9881215)
[»] chr7 (7 HSPs)
chr7 (10-107)||(10530134-10530231)
chr7 (10-107)||(9745188-9745285)
chr7 (10-107)||(29587639-29587737)
chr7 (10-110)||(8311792-8311894)
chr7 (48-107)||(13167948-13168007)
chr7 (10-58)||(10529524-10529572)
chr7 (68-107)||(46002795-46002834)
[»] scaffold0016 (1 HSPs)
scaffold0016 (10-107)||(107920-108017)
[»] scaffold0022 (1 HSPs)
scaffold0022 (10-107)||(2087-2184)
[»] chr3 (4 HSPs)
chr3 (10-107)||(15990163-15990260)
chr3 (10-107)||(40888684-40888780)
chr3 (10-107)||(29453712-29453809)
chr3 (71-107)||(52641386-52641422)
[»] chr2 (6 HSPs)
chr2 (10-107)||(27977144-27977241)
chr2 (10-107)||(28063672-28063769)
chr2 (10-107)||(29046556-29046651)
chr2 (10-113)||(16131075-16131177)
chr2 (11-92)||(22403839-22403920)
chr2 (61-113)||(28497237-28497288)
[»] scaffold0259 (1 HSPs)
scaffold0259 (61-110)||(2547-2596)
[»] scaffold0028 (1 HSPs)
scaffold0028 (10-59)||(148390-148439)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 115 - 379
Target Start/End: Complemental strand, 5637105 - 5636841
Alignment:
Q  115 aatatacaacatctgcactttcagccatgacaatttgaacannnnnnnnncactaattttccaaatattcaagtatactagtgctacactataaacatct 214  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  5637105 aatatacaacatctgcactttcagccatgacaatttgaacatttttttttcactaattttccaaatattcaagtatactagtgctactctataaacatgt 5637006  T
Q  215 aggatatttttcaaagcttgattttaaacaaagaaatactataaaggattatatcttacaacgaccaactactactagaaaatgaagaagttctaattag 314  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  5637005 aggatatttttcaaagcttgattttaaacaaaaaaatactataaaggattatatcttacaaagaccaactactactagaaaatgcagaagttctaattag 5636906  T
Q  315 ataaattccctactaggaaagcttgcatttatgtagctactaagtcaaaaccgttggttgaagat 379  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  5636905 ataaattccctactaggaaagcttgcatttacgtagctactaagtcaaagccgttggttgaagat 5636841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 41943011 - 41943108
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41943011 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcat 41943108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 10336077 - 10336174
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  10336077 aacaaaattgcaactcaccaattcttataatttgcaactacaagaaaaataataaaacacactaaatcttttcactcatccattaaatcaagaagcat 10336174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 3295405 - 3295359
Alignment:
Q  61 ataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  3295405 ataaaacacaataaatcttttctctcatccattaaatcaagaagcat 3295359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 31654568 - 31654665
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31654568 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcat 31654665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 51443519 - 51443616
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||    
T  51443519 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcat 51443616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 13380215 - 13380297
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccat 92  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||    
T  13380215 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccat 13380297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 8311180 - 8311247
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatc 77  Q
    ||||| |||||||| ||||||||||||||||||  ||||||||||||| | || ||||| ||||||||    
T  8311180 aacaagattgcaacccaccaattcttataattattaactacaagaaaattaatcaaacataataaatc 8311247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 9818171 - 9818268
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  9818171 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcat 9818268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 42077465 - 42077560
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagc 105  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42077465 aacaaaattgcaactcaccaattcttataattaacaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagc 42077560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 21231842 - 21231939
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||| ||||||||||||| |||||||| |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||    
T  21231842 aacaaaattggaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcat 21231939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 9881215 - 9881152
Alignment:
Q  44 caactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    |||||||||||||| | |||||||| | |||||||||||||||||||||| |||| | ||||||    
T  9881215 caactacaagaaaattaataaaacatagtaaatcttttcactcatccattgaatcgataagcat 9881152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 10530134 - 10530231
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10530134 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcat 10530231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 9745285 - 9745188
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||    
T  9745285 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaaataataaaacacaataaatattttcactcatccattgaatcaagaagcat 9745188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 29587737 - 29587639
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatc-ttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  29587737 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatctttttcactcatccattaaatcaagaagcat 29587639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 8311894 - 8311792
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaa-gaaaaattataaaa-cacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||| ||||| | |||||| || ||||||||||||||| |||||||  |||||||||||||    
T  8311894 aacaaaattgcaaatcaccaattcttataattatcaactacaaagaaaagtaataaaaacataataaatcttttcacccatccatcgaatcaagaagcat 8311795  T
Q  108 gtc 110  Q
    |||    
T  8311794 gtc 8311792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 13168007 - 13167948
Alignment:
Q  48 tacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    |||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  13168007 tacaagcaaaataataaaacacaataaatcttttccctcatccattaaatcaagaagcat 13167948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 10529524 - 10529572
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaa 58  Q
    ||||| |||||||||||||||||| |||||||| ||||||||| |||||    
T  10529524 aacaaaattgcaactcaccaattcatataattatcaactacaaaaaaaa 10529572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 46002795 - 46002834
Alignment:
Q  68 acaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  46002795 acaattaatcttttcactcatccattgaatcaagaagcat 46002834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 108017 - 107920
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  108017 aacaaaattgcaactcaccaattcttataattagcaactacaacaaaaataataaaatacaataaatcttttcactcatccattaaatcaaggagcat 107920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 2184 - 2087
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| ||||||| |||||||||| |||||||| |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||    
T  2184 aacaaaattgcaagtcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcat 2087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 15990163 - 15990260
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  15990163 aacaagattgcaacccaccaattcttataattatcaactacaagaaaattaataaaacataataattcttttcactcatccattaaatcaagaagcat 15990260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 40888684 - 40888780
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| | |||||||||||||    
T  40888684 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaatataataaatcttttcactcatcca-tgaatcaagaagcat 40888780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 29453809 - 29453712
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattat-aaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | || |||||| |||||||||||||||||||||| | |||||||||||||    
T  29453809 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaaacataataaatcttttcactcatcca-tgaatcaagaagcat 29453712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 52641386 - 52641422
Alignment:
Q  71 ataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||||||||||||||||||||| | |||||||||||    
T  52641386 ataaatcttttcactcatccattgagtcaagaagcat 52641422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 27977144 - 27977241
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||| ||||| |||||||| |||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||    
T  27977144 aacaaaattgcaactcacaaattcatataattatcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcat 27977241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 28063672 - 28063769
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||| ||||| |||||||| |||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||    
T  28063672 aacaaaattgcaactcacaaattcatataattatcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcat 28063769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 29046556 - 29046651
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 107  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||| |||||    
T  29046556 aacaaaattgcaactcaccaattctta--attagcaactacaagaaaaataataaaatacaataaatattttcaatcatccattaaatcaaggagcat 29046651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 16131075 - 16131177
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 109  Q
    ||||| |||||||||||||||||| |||||||| ||||||||| |||| | |||||| | | |||||||||||||||||| | | |||||||||||||||    
T  16131075 aacaaaattgcaactcaccaattcatataattatcaactacaaaaaaattaataaaatatagtaaatcttttcactcatcta-tgaatcaagaagcatgt 16131173  T
Q  110 cgaa 113  Q
    ||||    
T  16131174 cgaa 16131177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 22403920 - 22403839
Alignment:
Q  11 acaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccat 92  Q
    |||| |||||||| ||||||||||||||||||  |||| |||||||| | |||||||| |||||||||||||||||||||||    
T  22403920 acaagattgcaacccaccaattcttataattattaacttcaagaaaattaataaaacataataaatcttttcactcatccat 22403839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 28497237 - 28497288
Alignment:
Q  61 ataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcgaa 113  Q
    |||||||| ||||||||||||||||||| || | |||||||||||||||||||    
T  28497237 ataaaacataataaatcttttcactcattca-tgaatcaagaagcatgtcgaa 28497288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 2547 - 2596
Alignment:
Q  61 ataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547 ataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtc 2596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 148390 - 148439
Alignment:
Q  10 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaat 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  148390 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaat 148439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University