View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1074_low_2 (Length: 772)
Name: NF1074_low_2
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 30 - 743
Target Start/End: Complemental strand, 34419648 - 34418935
Alignment:
| Q |
30 |
agagaaagtgttctaaagagagtgtagataacactcactctgcaacaaattaggagaataacaaccactcattgaaacgttagcaaaatatatatcctaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
34419648 |
agagaaagtgttctaaagagagtgtagataacactcgctctgccttaaattaggagaataacaaccacatattaaaacgttagtaaaatatatatcctaa |
34419549 |
T |
|
| Q |
130 |
gcaatttgctacatgtttttaattatgtatgagaaccaatatcaatcaatttacgtcacaaatacatttgtcttgttccatgaaagtctcnnnnnnnnnn |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34419548 |
gcaatttgctacatgtttttaattatgtatgagaaccaatatcaatcaatttacgtcacaaatacatttgtcttgttccatgaaagtctcatttattttt |
34419449 |
T |
|
| Q |
230 |
nnnnnnnnnnnnnnncatccataaactatagtatatacttattnnnnnnngaacataatacatactactattacaagctttatttctaattgctgaataa |
329 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34419448 |
actttttattattttcatccataaactataatatatacttattaaaaaaagaacataatacatactactattacaagctttatttctaattgctgaataa |
34419349 |
T |
|
| Q |
330 |
tcatgacataaaaacaacttatgacttttatgttgtcatttcaggagctggagtatttgggcacctttcagattcatcactaggaagaaagggttctctc |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34419348 |
tcatgacataaaaacaacttatgacttttatgttgtcatttcaggagctggagtatttggacacctttcagattcatcactaggaagaaagggttctctc |
34419249 |
T |
|
| Q |
430 |
atagttgtttgtgccctaaacaccatatttggctgcttaacagcattctctcctaattattggatctatgtcctcctccgcctcctcaccggtttcagca |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34419248 |
atagttgtttgtgccctaaacaccatatttggctgcttaacagcattctcccctaattattggatctatgtcctcctccgcctcctcaccggtttcagca |
34419149 |
T |
|
| Q |
530 |
ctggcggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggcatggcaggaatgtccaccttctacttcttctcgag |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34419148 |
ctggcggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggcatggcaggaatgtccaccttctacttcttctcgag |
34419049 |
T |
|
| Q |
630 |
tggcatagcaattctctctggcattgcctacaccttccaaacatggcgcacactctacattgtttcctccatcccttccatcctatacataatccttgtc |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34419048 |
tggcatagcaattctctctggcattgcctacaccttccaaacatggcgcacactctacattgtttcctccatcccttccatcctatacataatccttgtc |
34418949 |
T |
|
| Q |
730 |
cttcccttcatctc |
743 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34418948 |
cttcccttcatctc |
34418935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 367 - 737
Target Start/End: Complemental strand, 34431560 - 34431190
Alignment:
| Q |
367 |
atttcaggagctggagtatttgggcacctttcagattcatcactaggaagaaagggttctctcatagttgtttgtgccctaaacaccatatttggctgct |
466 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| || || ||||||||||| ||||| |||| ||| |||||| ||||||| |||| |||||||| | |
|
|
| T |
34431560 |
atttcaggagctggagtgtttggtcacctttcagactcttctctaggaagaaaaggttccctcaaagtggtttgttccctaaatgccatttttggctgtt |
34431461 |
T |
|
| Q |
467 |
taacagcattctctcctaattattggatctatgtcctcctccgcctcctcaccggtttcagcactggcggtgttggcctttgcgccttcgtccttgccac |
566 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| || || |
|
|
| T |
34431460 |
taacagcattctcccctaactattggacctatgtcttcctccgcctcctcaccggttttagcaatggtggtgttggcctttgcgccttcgtcctcgctac |
34431361 |
T |
|
| Q |
567 |
cgagcccattggcccatcaaaacgtggcatggcaggaatgtccaccttctacttcttctcgagtggcatagcaattctctctggcattgcctacaccttc |
666 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
34431360 |
tgaacctattggccattcaaaacgtggcatggcaggaatgtccactttctacttcttctccggaggcattgcaattctctctggtattgcctacatcttc |
34431261 |
T |
|
| Q |
667 |
caaacatggcgcacactctacattgtttcctccatcccttccatcctatacataatccttgtccttccctt |
737 |
Q |
| |
|
||||||||||| ||||||| || | |||||||||| ||| |||| |||||||| || |||||||||| |
|
|
| T |
34431260 |
caaacatggcgtgcactctatatcgccgcctccatcccctccctcctctacataattctcctccttccctt |
34431190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 503 - 626
Target Start/End: Original strand, 31612478 - 31612601
Alignment:
| Q |
503 |
tcctccgcctcctcaccggtttcagcactggcggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggcatggcagg |
602 |
Q |
| |
|
|||||||| ||||||| ||||||||||| || || || ||||| ||||||||||| |||||||| |||||| | ||||| ||| ||||| ||||| |
|
|
| T |
31612478 |
tcctccgcttcctcactggtttcagcacaggtggcgtcggcctctgcgccttcgtacttgccacagagcccgtaggccccacaatgcgtggtgccgcagg |
31612577 |
T |
|
| Q |
603 |
aatgtccaccttctacttcttctc |
626 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
31612578 |
catgtctaccttctacttcttctc |
31612601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University