View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1074_low_25 (Length: 360)
Name: NF1074_low_25
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 54731014 - 54731297
Alignment:
| Q |
1 |
agtatacctatagaaataataatagtggacccttcagtccatgccatggctacttggctagtgctccttctcgtttaagtaatgagccagactttgatat |
100 |
Q |
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| T |
54731014 |
agtatacctatagaaataataatagtggacccttcagtccatgccatggctacttggctagtgctccttctcgtttaagtaatgagccagactttgatat |
54731113 |
T |
|
| Q |
101 |
ttcatagtatcgaatcttgatcattctagaaccatattgataattgatccatgataaaactggacattaaatgtcattgtcacaagaaataattgaaaga |
200 |
Q |
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| T |
54731114 |
ttcatagtatcgaatcttgatcattctagaaccatattgataattgatccatgataaaactggacattaaatgtcattgtcacaagaaataattgaaaga |
54731213 |
T |
|
| Q |
201 |
tttttatatatactatgccagtgccagtacaggtatcaaaccttatattaacgactaacaaattaaatcacattaacaaattct |
284 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54731214 |
tttttatatatattatgccagtgccagtacaggtatcaaaccttatattaacgactaacaaattaaatcacattaacaaattct |
54731297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 5305244 - 5305377
Alignment:
| Q |
147 |
atccatgataaaactggacattaaatgtcattgtcacaagaaataattgaaagatttttatatatactatgccagtgccagtacaggtatcaaaccttat |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5305244 |
atccatgataaaactggacattaaatgtcattgtcacaagaaataattgaaagatttttatat----tatgccagtgccagtacaggtatcaaaccttat |
5305339 |
T |
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| Q |
247 |
attaacgactaacaaattaaatcacattaacaaattct |
284 |
Q |
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| T |
5305340 |
attaacgactaacaaattaaatcacattaacaaattct |
5305377 |
T |
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