View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1074_low_26 (Length: 352)

Name: NF1074_low_26
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1074_low_26
NF1074_low_26
[»] chr8 (6 HSPs)
chr8 (84-324)||(9818171-9818410)
chr8 (84-245)||(42077465-42077625)
chr8 (84-255)||(21231842-21232012)
chr8 (118-248)||(9881085-9881215)
chr8 (148-249)||(24423220-24423320)
chr8 (153-213)||(29115604-29115664)
[»] chr7 (8 HSPs)
chr7 (84-324)||(10530134-10530373)
chr7 (84-256)||(29587564-29587737)
chr7 (84-252)||(9745118-9745285)
chr7 (122-248)||(13167881-13168007)
chr7 (84-245)||(8311731-8311894)
chr7 (142-234)||(46002795-46002887)
chr7 (148-243)||(31211093-31211188)
chr7 (84-132)||(10529524-10529572)
[»] scaffold0259 (1 HSPs)
scaffold0259 (135-324)||(2547-2736)
[»] chr4 (5 HSPs)
chr4 (84-254)||(41943011-41943180)
chr4 (135-250)||(3295290-3295405)
chr4 (84-181)||(10336077-10336174)
chr4 (145-256)||(31519152-31519263)
chr4 (184-255)||(10344738-10344808)
[»] chr1 (4 HSPs)
chr1 (84-243)||(31654568-31654726)
chr1 (84-248)||(13380215-13380378)
chr1 (84-226)||(51443519-51443661)
chr1 (84-151)||(8311180-8311247)
[»] chr3 (6 HSPs)
chr3 (84-251)||(15990163-15990330)
chr3 (84-249)||(40888684-40888848)
chr3 (145-248)||(52641386-52641489)
chr3 (84-247)||(29453643-29453809)
chr3 (144-242)||(19544714-19544811)
chr3 (157-256)||(11650592-11650691)
[»] scaffold0016 (1 HSPs)
scaffold0016 (84-239)||(107863-108017)
[»] chr2 (6 HSPs)
chr2 (84-258)||(27977144-27977317)
chr2 (84-258)||(28063672-28063845)
chr2 (84-247)||(16131075-16131237)
chr2 (84-219)||(29046556-29046689)
chr2 (135-248)||(28497237-28497349)
chr2 (85-246)||(22403747-22403920)
[»] scaffold0022 (1 HSPs)
scaffold0022 (84-246)||(2023-2184)
[»] scaffold0028 (1 HSPs)
scaffold0028 (84-133)||(148390-148439)
[»] chr5 (1 HSPs)
chr5 (144-244)||(18927154-18927255)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 84 - 324
Target Start/End: Original strand, 9818171 - 9818410
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  9818171 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatat 9818270  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatgctttccatgtttcctaagattgtttctgaac 283  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9818271 caaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttaccttagatgctttccatgtttcctaagattgtttctgaac 9818369  T
Q  284 taaacgcactaacaagtctcttaatcccatgtgtggaagct 324  Q
      |||||||||||||||||||||||||||||||||||||||    
T  9818370 cgaacgcactaacaagtctcttaatcccatgtgtggaagct 9818410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 42077465 - 42077625
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |    
T  42077465 aacaaaattgcaactcaccaattcttataattaacaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcgtat 42077564  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttacc 245  Q
    ||||||||||||||||| |||||||| ||| ||||| ||||||||| |||||| ||| ||||    
T  42077565 caaattcaacatcataatctatcattctcatttaaa-catggtcaagactagaacccctacc 42077625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 21231842 - 21232012
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||| ||||||||||||| |||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |    
T  21231842 aacaaaattggaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatat 21231941  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatgctt 255  Q
    ||||||||||||||||| |||||||||||| ||||| || |||||| ||||||||| |||||||||| ||||    
T  21231942 caaattcaacatcataatctatcattttcatttaaa-cacggtcaagactagagccattaccttagacgctt 21232012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 9881215 - 9881085
Alignment:
Q  118 caactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaatta 217  Q
    |||||||||||||| | |||||||| | |||||||||||||||||||||| |||| | |||||| ||||||| || ||||||| |||| ||||||| | |    
T  9881215 caactacaagaaaattaataaaacatagtaaatcttttcactcatccattgaatcgataagcatatcaaatttaagatcataatctattattttcattca 9881116  T
Q  218 aatcatggtcaaaactagagcccttacctta 248  Q
    || |||| |||| |||| |||||||||||||    
T  9881115 aaacatgatcaagactatagcccttacctta 9881085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 24423320 - 24423220
Alignment:
Q  148 aatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttacctt 247  Q
    ||||| |||||||||||| | ||| |||||||||   |||||||| ||||||| |||||||||||| ||||||||||||||| ||||| | |||||||||    
T  24423320 aatctcttcactcatccaatgaat-aagaagcatacaaaattcaatatcataaactatcattttcagttaaatcatggtcaagactagggtccttacctt 24423222  T
Q  248 ag 249  Q
    ||    
T  24423221 ag 24423220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 29115604 - 29115664
Alignment:
Q  153 tttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttca 213  Q
    ||||||||||||||  ||||| ||||||| |||||||||| |||||||||||  |||||||    
T  29115604 tttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttca 29115664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 84 - 324
Target Start/End: Original strand, 10530134 - 10530373
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  10530134 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatat 10530233  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatgctttccatgtttcctaagattgtttctgaac 283  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10530234 caaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcccttaccttagatgctttccatgtttcctaagattgtttctgaac 10530332  T
Q  284 taaacgcactaacaagtctcttaatcccatgtgtggaagct 324  Q
      |||||||||||||||||||||||||||||||||||||||    
T  10530333 cgaacgcactaacaagtctcttaatcccatgtgtggaagct 10530373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 84 - 256
Target Start/End: Complemental strand, 29587737 - 29587564
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatctttt-cactcatccattaaatcaagaagcatg 182  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||||||||||| ||||||||||||||||||||||||||     
T  29587737 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatctttttcactcatccattaaatcaagaagcata 29587638  T
Q  183 tcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatgcttt 256  Q
    |||||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||| |||||    
T  29587637 tcaaattcaacatcataatctatcattttcattcaaatcatggtcaagactagagcccttaccttagacgcttt 29587564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 84 - 252
Target Start/End: Complemental strand, 9745285 - 9745118
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |    
T  9745285 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaaataataaaacacaataaatattttcactcatccattgaatcaagaagcatat 9745186  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatg 252  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||||| ||||||||||||||||| ||||    
T  9745185 caaattcaacatcataatctatcattttcctttaaa-catggtcaagactagagcccttaccttggatg 9745118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 13168007 - 13167881
Alignment:
Q  122 tacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatc 221  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||    
T  13168007 tacaagcaaaataataaaacacaataaatcttttccctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcacttaaatc 13167908  T
Q  222 atggtcaaaactagagcccttacctta 248  Q
    |||||||| ||||||||||||||||||    
T  13167907 atggtcaagactagagcccttacctta 13167881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 84 - 245
Target Start/End: Complemental strand, 8311894 - 8311731
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaa-gaaaaattataaaa-cacaataaatcttttcactcatccattaaatcaagaagcat 181  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||| ||||| | |||||| || ||||||||||||||| |||||||  |||||||||||||    
T  8311894 aacaaaattgcaaatcaccaattcttataattatcaactacaaagaaaagtaataaaaacataataaatcttttcacccatccatcgaatcaagaagcat 8311795  T
Q  182 gtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttacc 245  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||| ||||||    
T  8311794 gtcaaattcaacatcataatctattattttcagttaaatcatggtcaagactagagcacttacc 8311731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 46002795 - 46002887
Alignment:
Q  142 acaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaacta 234  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||| ||||||| |||||||||| |||| ||||    
T  46002795 acaattaatcttttcactcatccattgaatcaagaagcatatcaaattcaatatcacaacctattattttcatttaaatcatgatcaagacta 46002887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 31211188 - 31211093
Alignment:
Q  148 aatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagccctta 243  Q
    ||||| ||||| |||| ||||||||||||||||| ||||||| || |||||||||||| |||||||  || |||||| |||| |||||||||||||    
T  31211188 aatctcttcacgcatctattaaatcaagaagcatatcaaatttaatatcataacctattattttcatctagatcatgatcaagactagagccctta 31211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 10529524 - 10529572
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaa 132  Q
    ||||| |||||||||||||||||| |||||||| ||||||||| |||||    
T  10529524 aacaaaattgcaactcaccaattcatataattatcaactacaaaaaaaa 10529572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 135 - 324
Target Start/End: Original strand, 2547 - 2736
Alignment:
Q  135 ataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaacta 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547 ataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaacta 2646  T
Q  235 gagcccttaccttagatgctttccatgtttcctaagattgtttctgaactaaacgcactaacaagtctcttaatcccatgtgtggaagct 324  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2647 gagcccttaccttagatgctttccgtgtttcctaagattgtttctgaactaaacgcactaacaagtctcttaatcccatgtgtggaagct 2736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 41943011 - 41943180
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41943011 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatat 41943110  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatgct 254  Q
    ||||||||||| ||||| |||||||||||| ||||| ||||||||| ||||||||| || |||||||||||    
T  41943111 caaattcaacaacataatctatcattttcatttaaa-catggtcaagactagagcctttgccttagatgct 41943180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 3295405 - 3295290
Alignment:
Q  135 ataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaacta 234  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||| ||||    
T  3295405 ataaaacacaataaatcttttctctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcagtttcacttaaatcatggtcaagacta 3295306  T
Q  235 gagcccttaccttaga 250  Q
    |||| |||||||||||    
T  3295305 gagctcttaccttaga 3295290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 10336077 - 10336174
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcat 181  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  10336077 aacaaaattgcaactcaccaattcttataatttgcaactacaagaaaaataataaaacacactaaatcttttcactcatccattaaatcaagaagcat 10336174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 31519152 - 31519263
Alignment:
Q  145 ataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttac 244  Q
    ||||||||||||||||||| ||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  31519152 ataaatcttttcactcatctattgagtcaagaagcatatcaaattcaacgtcataacctatcattttcaattaaatcatggtcaagactagagcctttac 31519251  T
Q  245 cttagatgcttt 256  Q
    ||| || |||||    
T  31519252 cttggacgcttt 31519263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 10344738 - 10344808
Alignment:
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatgctt 255  Q
    ||||||||||||||||| |||||||||||| |||||  |||||||| |||||| ||||||||||||||||||    
T  10344738 caaattcaacatcataatctatcattttcatttaaa-aatggtcaagactagaacccttaccttagatgctt 10344808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 31654568 - 31654726
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31654568 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatat 31654667  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagccctta 243  Q
    ||||| ||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||    
T  31654668 caaatccaacatcataatctatcattttcatttaaa-catggtcaagactagagccctta 31654726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 13380215 - 13380378
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||||||||||||||||||||| | |||||||||| || |    
T  13380215 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatcca-tgaatcaagaagtatat 13380313  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttacctta 248  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||    
T  13380314 caaattcaacgtcataacctatcattttcacttaaatcatggtcaagactagaacccttacctta 13380378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 51443519 - 51443661
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |    
T  51443519 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatat 51443618  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggt 226  Q
    ||||||||||||||||| |||||||||||| | ||||||||||    
T  51443619 caaattcaacatcataatctatcattttcattcaaatcatggt 51443661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 8311180 - 8311247
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatc 151  Q
    ||||| |||||||| ||||||||||||||||||  ||||||||||||| | || ||||| ||||||||    
T  8311180 aacaagattgcaacccaccaattcttataattattaactacaagaaaattaatcaaacataataaatc 8311247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 15990163 - 15990330
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| |    
T  15990163 aacaagattgcaacccaccaattcttataattatcaactacaagaaaattaataaaacataataattcttttcactcatccattaaatcaagaagcatat 15990262  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagat 251  Q
    |||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  15990263 caaattcaacgtcataatctatcattttcagttaaatcatggtcaagactagagcccttaccttagat 15990330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 249
Target Start/End: Original strand, 40888684 - 40888848
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| | ||||||||||||| |    
T  40888684 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaatataataaatcttttcactcatcca-tgaatcaagaagcatat 40888782  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttag 249  Q
     ||||||||| |||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  40888783 taaattcaacgtcataatctatcattttcaattaaatcatggccaagactagggcccttaccttag 40888848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 52641386 - 52641489
Alignment:
Q  145 ataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttac 244  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  52641386 ataaatcttttcactcatccattgagtcaagaagcatatcaaattcaacatcataatctatcattttcaattaaatcatggtcaaaactagagcccttac 52641485  T
Q  245 ctta 248  Q
    ||||    
T  52641486 ctta 52641489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 29453809 - 29453643
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattat-aaaacacaataaatcttttcactcatccattaaatcaagaagcatg 182  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||| | || |||||| |||||||||||||||||||||| | |||||||||||||     
T  29453809 aacaaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaaacataataaatcttttcactcatcca-tgaatcaagaagcata 29453711  T
Q  183 tcaaattcaacatcata----acctatcattttcaattaaatcatggtcaaaactagagcccttacctt 247  Q
    ||||||||||  |||||    | |||||||||||| ||||| ||||||||||||||||| |||||||||    
T  29453710 tcaaattcaatgtcataatctatctatcattttcatttaaa-catggtcaaaactagagtccttacctt 29453643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 19544714 - 19544811
Alignment:
Q  144 aataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagccctt 242  Q
    |||||||||||||||||||||||  |||||| |||||| |||| |||||||||||||||||||| ||||| ||| |||||| |||  ||||||||||||    
T  19544714 aataaatcttttcactcatccatcgaatcaataagcatatcaa-ttcaacatcataacctatcactttcatttagatcatgatcatgactagagccctt 19544811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 11650592 - 11650691
Alignment:
Q  157 actcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatgcttt 256  Q
    ||||||| ||| ||||||||||||| |||||||||| |||| |||| || ||||||  |||||||||||| || |||| ||||||||||||| |||||||    
T  11650592 actcatcaattgaatcaagaagcatatcaaattcaatatcacaaccaattattttcttttaaatcatggttaagactatagcccttaccttatatgcttt 11650691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 108017 - 107863
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |    
T  108017 aacaaaattgcaactcaccaattcttataattagcaactacaacaaaaataataaaatacaataaatcttttcactcatccattaaatcaaggagcatat 107918  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcc 239  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||    
T  107917 caaattcaacatcataatctatcattttcatttaaa-catggtcaagactagagcc 107863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 84 - 258
Target Start/End: Original strand, 27977144 - 27977317
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||| ||||| |||||||| |||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||| |    
T  27977144 aacaaaattgcaactcacaaattcatataattatcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcatat 27977243  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatgctttcc 258  Q
    ||||||||||||||||| |||||||||||| ||||| |||||| || |||||||||||||||||||| |||||||    
T  27977244 caaattcaacatcataatctatcattttcatttaaa-catggttaagactagagcccttaccttagacgctttcc 27977317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 84 - 258
Target Start/End: Original strand, 28063672 - 28063845
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||| ||||| |||||||| |||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||| |    
T  28063672 aacaaaattgcaactcacaaattcatataattatcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcatat 28063771  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttaccttagatgctttcc 258  Q
    ||||||||||||||||| |||||||||||| ||||| |||||| || |||||||||||||||||||| |||||||    
T  28063772 caaattcaacatcataatctatcattttcatttaaa-catggttaagactagagcccttaccttagacgctttcc 28063845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 84 - 247
Target Start/End: Original strand, 16131075 - 16131237
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||| |||||||| ||||||||| |||| | |||||| | | |||||||||||||||||| || || |||||||||||||    
T  16131075 aacaaaattgcaactcaccaattcatataattatcaactacaaaaaaattaataaaatatagtaaatcttttcactcatctatgaa-tcaagaagcatgt 16131173  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttacctt 247  Q
    | |||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16131174 cgaattcagcatcataacctatcattttcaattaaaccatggtcaagactagagcccttacctt 16131237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 29046556 - 29046689
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||| ||||| |    
T  29046556 aacaaaattgcaactcaccaattctta--attagcaactacaagaaaaataataaaatacaataaatattttcaatcatccattaaatcaaggagcatat 29046653  T
Q  184 caaattcaacatcataacctatcattttcaattaaa 219  Q
    ||||||||||||||||| |||||||||||| |||||    
T  29046654 caaattcaacatcataatctatcattttcatttaaa 29046689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 28497237 - 28497349
Alignment:
Q  135 ataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaacta 234  Q
    |||||||| ||||||||||||||||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28497237 ataaaacataataaatcttttcactcattcatgaa-tcaagaagcatgtcgaattcaacatcataacctatcattttcaattaaatcatggtcaagacta 28497335  T
Q  235 gagcccttacctta 248  Q
    ||||||||||||||    
T  28497336 gagcccttacctta 28497349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 22403920 - 22403747
Alignment:
Q  85 acaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatca----------- 173  Q
    |||| |||||||| ||||||||||||||||||  |||| |||||||| | |||||||| |||||||||||||||||||||||  |||||               
T  22403920 acaagattgcaacccaccaattcttataattattaacttcaagaaaattaataaaacataataaatcttttcactcatccatcgaatcatccatcgaatc 22403821  T
Q  174 -agaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttacct 246  Q
     |||||||| |||||||||||||||||| |||| ||||||| |||||||||||| || ||||||||||||||||    
T  22403820 aagaagcatatcaaattcaacatcataatctattattttcagttaaatcatggtaaagactagagcccttacct 22403747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 2184 - 2023
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaattataaaacacaataaatcttttcactcatccattaaatcaagaagcatgt 183  Q
    ||||| ||||||| |||||||||| |||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |    
T  2184 aacaaaattgcaagtcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatat 2085  T
Q  184 caaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagcccttacct 246  Q
    ||||||||||||||||| ||||  |||||| |||||| |||||||| ||||||||||||||||    
T  2084 caaattcaacatcataatctattgttttcatttaaat-atggtcaagactagagcccttacct 2023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 148390 - 148439
Alignment:
Q  84 aacaatattgcaactcaccaattcttataattagcaactacaagaaaaat 133  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  148390 aacaaaattgcaactcaccaattcttataattagcaactacaagaaaaat 148439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 18927154 - 18927255
Alignment:
Q  144 aataaatcttttcactcatccattaaatc-aagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaactagagccctt 242  Q
    ||||||||| | ||| ||||| || |||| ||||||||| ||||||||||| ||||||||||| |||||||  ||||| |||||||| || |||||||||    
T  18927154 aataaatctctccacccatccgttgaatccaagaagcatatcaaattcaacttcataacctattattttcatctaaataatggtcaagacaagagccctt 18927253  T
Q  243 ac 244  Q
    ||    
T  18927254 ac 18927255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University