View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1074_low_27 (Length: 351)
Name: NF1074_low_27
Description: NF1074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1074_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 6952848 - 6952921
Alignment:
| Q |
234 |
aactacgtattatatctaaagaaaaataaacacttttcaagaacaatatttaaactaagaaatcagcccttttt |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6952848 |
aactatgtattatatctaaagaaaaataaacacttttcaagaagaatatttaaactaagaaatcagcccttttt |
6952921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 29150851 - 29150659
Alignment:
| Q |
63 |
acataccggtacagtaatttctagagtattgagtttgttgcaggacgttagtacatacgaaagtgtcatagcttcccttatgttattcaaatccaaatca |
162 |
Q |
| |
|
|||||||||| | |||||||||||||||| || | ||| || | ||||||| |||||||| |||| |||||| ||||| |||| ||||||||||||| |
|
|
| T |
29150851 |
acataccggtgtaataatttctagagtatttagatggttacataaggttagtatgtacgaaagggtcaaagcttctcttatattatccaaatccaaatca |
29150752 |
T |
|
| Q |
163 |
attgacaaggccgaaagattttgaaaaatgttgatcgatcaagattcctgtattgaagaaatagttagcataactacgtattatatctaaaga |
255 |
Q |
| |
|
|||||||||| | | |||||||||||||||| | ||| |||| ||| |||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
29150751 |
attgacaaggtcaacgaattttgaaaaatgttggttgattgagatgcctacattgaagagttagttagcacaactacatattatatctaaaga |
29150659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 33527621 - 33527753
Alignment:
| Q |
63 |
acataccggtacagtaatttctagagtattgagtttgttgcaggacgttagtacatacgaaagtgtcatagcttcccttatgttattcaaatccaaatca |
162 |
Q |
| |
|
||||||||||| || |||||| || |||||||| | |||| ||| |||||| || ||||||| || |||||| ||||| |||||||||||||| ||| |
|
|
| T |
33527621 |
acataccggtatagaaatttcaagggtattgagacagatgcatgactttagtatgtatgaaagtgccaaagcttctcttatattattcaaatccaattca |
33527720 |
T |
|
| Q |
163 |
attgacaaggccgaaagattttgaaaaatgttg |
195 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||| |
|
|
| T |
33527721 |
attgataaggtcgatagattttgaaaaatgttg |
33527753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University